Wall clock time and date at job start Mon Mar 30 2020 02:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35907 * 116.99865 * 2 1 4 4 C 1.38426 * 119.93692 * 179.97438 * 3 2 1 5 5 C 1.39815 * 119.87658 * 180.02562 * 4 3 2 6 6 C 1.47167 * 120.12489 * 179.72749 * 5 4 3 7 7 C 1.34971 * 120.00424 * 180.02562 * 6 5 4 8 8 C 1.46230 * 119.99924 * 179.97438 * 7 6 5 9 9 O 1.21756 * 120.00430 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99592 * 179.97438 * 8 7 6 11 11 C 1.36711 * 119.99789 * 180.02562 * 10 8 7 12 12 H 1.08005 * 120.00154 * 359.97438 * 11 10 8 13 13 C 1.39121 * 119.99805 * 180.02562 * 11 10 8 14 14 N 1.31315 * 120.00261 * 359.97438 * 13 11 10 15 15 Si 1.86810 * 119.99843 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46868 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47203 * 119.99889 * 15 13 11 18 18 H 1.48495 * 109.46738 * 239.99850 * 15 13 11 19 19 C 1.39815 * 119.75621 * 0.02562 * 5 4 3 20 20 C 1.38425 * 119.87794 * 359.97438 * 19 5 4 21 21 O 1.35909 * 119.93935 * 179.97438 * 20 19 5 22 22 C 1.42902 * 116.99963 * 180.02562 * 21 20 19 23 23 C 1.38787 * 119.94173 * 0.02562 * 3 2 1 24 24 H 1.09002 * 109.47380 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47696 * 300.00181 * 1 2 3 26 26 H 1.09005 * 109.47310 * 60.00326 * 1 2 3 27 27 H 1.08000 * 120.06757 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.99581 * 359.97438 * 6 5 4 29 29 H 1.08000 * 119.99268 * 359.97438 * 7 6 5 30 30 H 0.96998 * 120.00216 * 359.97438 * 10 8 7 31 31 H 0.97008 * 120.00181 * 180.02562 * 14 13 11 32 32 H 1.08005 * 120.06286 * 179.97438 * 19 5 4 33 33 H 1.08999 * 109.46660 * 59.99956 * 22 21 20 34 34 H 1.08992 * 109.47033 * 179.97438 * 22 21 20 35 35 H 1.08999 * 109.47240 * 300.00511 * 22 21 20 36 36 H 1.08002 * 119.87563 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4283 1.2819 0.0005 5 6 4.0617 2.5284 0.0011 6 6 5.5311 2.6102 0.0077 7 6 6.1400 3.8147 0.0087 8 6 7.6001 3.8959 0.0159 9 8 8.2665 2.8769 0.0204 10 7 8.2081 5.0988 0.0164 11 6 9.5731 5.1747 0.0225 12 1 10.1642 4.2708 0.0274 13 6 10.2006 6.4163 0.0236 14 7 9.4820 7.5153 0.0182 15 14 12.0658 6.5201 0.0327 16 1 12.6377 5.1497 0.0385 17 1 12.5273 7.2445 -1.1787 18 1 12.5150 7.2486 1.2463 19 6 3.2940 3.6969 0.0016 20 6 1.9122 3.6141 0.0011 21 8 1.1647 4.7492 0.0021 22 6 -0.2555 4.5907 0.0021 23 6 1.2888 2.3741 0.0005 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 4.0166 0.3762 0.0014 28 1 6.1222 1.7063 0.0126 29 1 5.5489 4.7185 0.0043 30 1 7.6772 5.9105 0.0116 31 1 9.9196 8.3811 0.0186 32 1 3.7782 4.6623 0.0025 33 1 -0.5594 4.0389 0.8916 34 1 -0.7305 5.5717 0.0034 35 1 -0.5596 4.0405 -0.8883 36 1 0.2105 2.3141 0.0005 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060332214.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:39 Heat of formation + Delta-G solvation = -93.723180 kcal Electronic energy + Delta-G solvation = -20062.415361 eV Core-core repulsion = 16704.899783 eV Total energy + Delta-G solvation = -3357.515578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.53805 -40.16909 -39.79523 -38.07417 -36.13463 -34.24300 -33.34691 -31.39444 -30.44902 -28.84330 -27.46523 -27.29164 -24.66768 -23.46178 -21.96911 -20.56516 -19.87356 -19.19119 -18.06945 -17.84977 -17.10292 -16.91808 -16.91543 -16.39013 -16.35697 -15.83264 -15.64373 -15.38741 -15.11204 -14.73805 -14.06730 -13.77490 -13.58458 -13.39474 -12.98210 -12.97882 -12.68836 -12.47498 -12.46382 -12.22353 -12.11721 -12.07238 -12.06334 -11.59709 -10.66573 -10.51224 -10.11778 -9.25218 -9.06944 -8.56453 -5.99040 -0.46976 0.42616 1.01308 1.41580 1.43712 1.56778 2.21982 2.28137 2.32246 2.40372 2.81005 3.17679 3.27364 3.74599 3.88085 3.99000 4.12942 4.18924 4.27948 4.33269 4.37834 4.40068 4.42015 4.52159 4.61517 4.73671 4.74524 5.08572 5.13942 5.17281 5.32778 5.37453 5.56267 5.65301 5.95685 6.18986 6.48603 6.51312 7.03164 7.45039 8.03336 8.60766 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.029702 B = 0.003155 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.478056 B = 8873.574019 C = 9795.596392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.161 3.839 4 C -0.185 4.185 5 C 0.015 3.985 6 C -0.058 4.058 7 C -0.164 4.164 8 C 0.450 3.550 9 O -0.645 6.645 10 N -0.550 5.550 11 C -0.336 4.336 12 H 0.084 0.916 13 C -0.010 4.010 14 N -0.909 5.909 15 Si 1.000 3.000 16 H -0.271 1.271 17 H -0.267 1.267 18 H -0.267 1.267 19 C -0.193 4.193 20 C 0.161 3.839 21 O -0.330 6.330 22 C 0.015 3.985 23 C -0.286 4.286 24 H 0.121 0.879 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.139 0.861 28 H 0.125 0.875 29 H 0.144 0.856 30 H 0.399 0.601 31 H 0.283 0.717 32 H 0.136 0.864 33 H 0.068 0.932 34 H 0.120 0.880 35 H 0.068 0.932 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.038 -6.834 -0.058 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.115 3.885 4 C -0.204 4.204 5 C 0.015 3.985 6 C -0.079 4.079 7 C -0.185 4.185 8 C 0.241 3.759 9 O -0.536 6.536 10 N -0.183 5.183 11 C -0.466 4.466 12 H 0.102 0.898 13 C -0.212 4.212 14 N -0.548 5.548 15 Si 0.822 3.178 16 H -0.196 1.196 17 H -0.192 1.192 18 H -0.192 1.192 19 C -0.212 4.212 20 C 0.115 3.885 21 O -0.244 6.244 22 C -0.079 4.079 23 C -0.305 4.305 24 H 0.140 0.860 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.157 0.843 28 H 0.143 0.857 29 H 0.161 0.839 30 H 0.233 0.767 31 H 0.093 0.907 32 H 0.154 0.846 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.086 0.914 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -23.409 -7.222 -0.053 24.498 hybrid contribution 0.395 0.605 0.001 0.723 sum -23.014 -6.616 -0.052 23.946 Atomic orbital electron populations 1.23416 0.76164 1.05902 1.02426 1.86092 1.23766 1.26098 1.88270 1.18578 0.91540 0.84494 0.93838 1.20579 0.92204 0.97733 1.09848 1.18389 0.91521 0.92218 0.96418 1.22077 0.91866 0.97911 0.96043 1.23026 0.92472 0.99767 1.03197 1.18558 0.89228 0.83505 0.84607 1.90596 1.67844 1.35858 1.59333 1.41891 1.07301 1.07210 1.61862 1.19826 0.82743 0.94277 1.49705 0.89845 1.26224 1.05628 0.93767 0.95548 1.69637 1.38449 0.98563 1.48164 0.84781 0.75897 0.78504 0.78610 1.19596 1.19203 1.19217 1.20676 0.91284 0.99116 1.10136 1.18598 0.90587 0.85490 0.93788 1.86108 1.21108 1.28942 1.88242 1.23413 0.76305 1.05702 1.02461 1.21509 1.01781 0.90810 1.16446 0.86033 0.91458 0.91465 0.84331 0.85686 0.83871 0.76672 0.90732 0.84650 0.91377 0.86204 0.91365 0.81822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.27 16 2 O -0.33 -6.76 10.49 -92.50 -0.97 -7.73 16 3 C 0.16 3.83 6.68 22.45 0.15 3.98 16 4 C -0.18 -5.10 9.73 22.70 0.22 -4.88 16 5 C 0.01 0.46 5.87 -20.17 -0.12 0.34 16 6 C -0.06 -2.09 9.46 23.86 0.23 -1.86 16 7 C -0.16 -6.57 9.41 23.60 0.22 -6.35 16 8 C 0.45 23.36 7.69 86.32 0.66 24.02 16 9 O -0.65 -38.29 15.80 -4.53 -0.07 -38.36 16 10 N -0.55 -29.76 5.27 -311.04 -1.64 -31.40 16 11 C -0.34 -19.55 9.68 84.14 0.81 -18.73 16 12 H 0.08 5.16 7.15 -2.91 -0.02 5.14 16 13 C -0.01 -0.55 5.50 84.98 0.47 -0.08 16 14 N -0.91 -49.13 13.04 21.69 0.28 -48.85 16 15 Si 1.00 42.80 29.55 68.60 2.03 44.82 16 16 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 17 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 18 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 19 C -0.19 -5.58 9.35 22.70 0.21 -5.36 16 20 C 0.16 3.98 6.68 22.45 0.15 4.13 16 21 O -0.33 -7.31 10.49 -92.53 -0.97 -8.28 16 22 C 0.02 0.17 9.81 113.37 1.11 1.29 16 23 C -0.29 -5.89 8.03 22.53 0.18 -5.71 16 24 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.54 7.65 -2.38 -0.02 0.52 16 26 H 0.07 0.54 7.66 -2.38 -0.02 0.52 16 27 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 28 H 0.13 4.77 7.52 -2.91 -0.02 4.75 16 29 H 0.14 4.91 6.07 -2.91 -0.02 4.89 16 30 H 0.40 20.38 7.87 -92.71 -0.73 19.65 16 31 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 32 H 0.14 3.88 6.16 -2.91 -0.02 3.86 16 33 H 0.07 0.60 7.65 -2.39 -0.02 0.58 16 34 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 0.60 7.65 -2.39 -0.02 0.58 16 36 H 0.16 2.16 4.48 -2.91 -0.01 2.15 16 Total: -1.00 -72.40 316.16 4.46 -67.93 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.39 Total: 29.82 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 5.41 Total: -7.95 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -1.36 Total: -80.25 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -2.01 Total: -54.37 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -72.40 4.46 -67.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060332214.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.792 kcal (2) G-P(sol) polarization free energy of solvation -72.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds