Wall clock time and date at job start Mon Mar 30 2020 02:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34683 * 117.00350 * 2 1 4 4 O 1.21443 * 120.00205 * 359.97438 * 3 2 1 5 5 C 1.47925 * 120.00528 * 179.97438 * 3 2 1 6 6 C 1.39599 * 120.01086 * 180.02562 * 5 3 2 7 7 C 1.37819 * 119.99491 * 180.27811 * 6 5 3 8 8 C 1.39552 * 120.00580 * 359.51808 * 7 6 5 9 9 C 1.48044 * 119.99814 * 180.23183 * 8 7 6 10 10 O 1.21516 * 120.00072 * 147.68056 * 9 8 7 11 11 N 1.34782 * 119.99730 * 327.68183 * 9 8 7 12 12 C 1.46500 * 119.99813 * 4.33937 * 11 9 8 13 13 C 1.46499 * 119.99991 * 184.33768 * 11 9 8 14 14 C 1.50706 * 109.46887 * 90.00167 * 13 11 9 15 15 H 1.08000 * 120.00181 * 359.97438 * 14 13 11 16 16 C 1.37874 * 120.00032 * 180.02562 * 14 13 11 17 17 N 1.31521 * 119.99671 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00122 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47480 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47262 * 119.99585 * 18 16 14 21 21 H 1.48501 * 109.47168 * 239.99607 * 18 16 14 22 22 C 1.39559 * 120.01164 * 0.45959 * 8 7 6 23 23 C 1.37819 * 120.00074 * 359.79462 * 22 8 7 24 24 H 1.08999 * 109.47067 * 300.00356 * 1 2 3 25 25 H 1.08999 * 109.46686 * 60.00106 * 1 2 3 26 26 H 1.08995 * 109.47401 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.99955 * 0.02562 * 6 5 3 28 28 H 1.08001 * 119.99521 * 179.72238 * 7 6 5 29 29 H 1.09001 * 109.47077 * 95.00146 * 12 11 9 30 30 H 1.09004 * 109.46714 * 215.00022 * 12 11 9 31 31 H 1.09002 * 109.47291 * 334.99819 * 12 11 9 32 32 H 1.08997 * 109.47375 * 209.99774 * 13 11 9 33 33 H 1.08995 * 109.47084 * 330.00320 * 13 11 9 34 34 H 0.97000 * 119.99548 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.00205 * 179.77197 * 22 8 7 36 36 H 1.08009 * 119.99846 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4022 2.2186 -0.0005 5 6 3.5408 1.2775 0.0006 6 6 4.1747 2.5212 0.0011 7 6 5.5510 2.5930 -0.0041 8 6 6.3109 1.4225 0.0002 9 6 7.7894 1.4999 -0.0003 10 8 8.4427 0.6456 0.5654 11 7 8.4107 2.5179 -0.6283 12 6 7.6235 3.5979 -1.2284 13 6 9.8731 2.5443 -0.7106 14 6 10.3186 1.8328 -1.9623 15 1 9.5858 1.4036 -2.6294 16 6 11.6619 1.7290 -2.2552 17 7 12.5544 2.2514 -1.4425 18 14 12.2142 0.8466 -3.8061 19 1 11.0246 0.3521 -4.5446 20 1 12.9755 1.7876 -4.6666 21 1 13.0817 -0.3017 -3.4401 22 6 5.6775 0.1790 0.0001 23 6 4.3012 0.1067 0.0000 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.5867 3.4270 0.0015 28 1 6.0415 3.5552 -0.0083 29 1 7.5441 4.4249 -0.5228 30 1 8.1144 3.9427 -2.1385 31 1 6.6266 3.2297 -1.4704 32 1 10.2169 3.5782 -0.7386 33 1 10.2952 2.0445 0.1612 34 1 13.4994 2.1780 -1.6484 35 1 6.2657 -0.7267 -0.0003 36 1 3.8109 -0.8557 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061037198.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:03 Heat of formation + Delta-G solvation = -73.366394 kcal Electronic energy + Delta-G solvation = -20627.714315 eV Core-core repulsion = 17271.081473 eV Total energy + Delta-G solvation = -3356.632842 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.82238 -39.83256 -37.89209 -36.62779 -35.09951 -32.88437 -31.67808 -31.13810 -28.37233 -27.60944 -26.31952 -24.69682 -22.90911 -22.55330 -21.12829 -19.30265 -18.19744 -17.32759 -16.74566 -16.60773 -16.57743 -15.70830 -15.01254 -14.82059 -14.60330 -14.21782 -14.05138 -13.71393 -13.58695 -13.26297 -12.76185 -12.47923 -12.41079 -12.32808 -12.11568 -11.68900 -11.27261 -11.09601 -11.00468 -10.90858 -10.74865 -10.62998 -10.21513 -9.69275 -9.24914 -9.10980 -8.96175 -8.48486 -7.76455 -6.09443 -4.14767 0.35193 1.22846 2.21866 2.40673 3.25143 3.27289 3.35136 3.39109 3.68480 3.95573 4.40079 4.44824 4.70017 4.79404 4.80763 4.86929 4.87996 5.16798 5.18978 5.25086 5.29209 5.48996 5.64098 5.77725 5.87121 5.93587 6.08427 6.15367 6.17657 6.29082 6.63401 6.97094 7.35810 7.42757 7.47433 7.86496 8.16015 8.25336 8.78977 8.94753 9.50625 10.98756 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.033572 B = 0.003501 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.835985 B = 7996.272277 C = 8219.551539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.354 6.354 3 C 0.511 3.489 4 O -0.507 6.507 5 C -0.121 4.121 6 C -0.063 4.063 7 C -0.117 4.117 8 C -0.077 4.077 9 C 0.540 3.460 10 O -0.531 6.531 11 N -0.590 5.590 12 C 0.062 3.938 13 C 0.243 3.757 14 C -0.530 4.530 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.893 5.893 18 Si 0.899 3.101 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.282 1.282 22 C -0.082 4.082 23 C -0.069 4.069 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.141 0.859 28 H 0.155 0.845 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.036 0.964 33 H 0.048 0.952 34 H 0.264 0.736 35 H 0.143 0.857 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.119 -0.793 1.970 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.356 3.644 4 O -0.396 6.396 5 C -0.122 4.122 6 C -0.082 4.082 7 C -0.135 4.135 8 C -0.080 4.080 9 C 0.326 3.674 10 O -0.409 6.409 11 N -0.321 5.321 12 C -0.081 4.081 13 C 0.124 3.876 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.727 3.273 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.101 4.101 23 C -0.087 4.087 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.159 0.841 28 H 0.172 0.828 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.763 -0.906 2.280 20.908 hybrid contribution 0.162 -0.340 -0.945 1.017 sum -20.601 -1.246 1.336 20.682 Atomic orbital electron populations 1.23290 0.75922 1.03826 1.02655 1.86549 1.23594 1.32661 1.84263 1.21319 0.89182 0.81397 0.72472 1.90820 1.66816 1.36040 1.45946 1.19176 0.88681 0.95264 1.09101 1.21192 0.94299 0.96702 0.95964 1.21955 0.93198 0.99413 0.98948 1.20625 0.94929 0.94213 0.98246 1.18205 0.86158 0.82604 0.80409 1.90762 1.66336 1.39184 1.44613 1.48097 1.09903 1.21279 1.52776 1.22319 0.96719 0.90169 0.98913 1.19386 0.71763 0.97921 0.98494 1.21458 0.92084 1.36315 1.06971 0.92292 1.24942 0.96439 0.95522 0.97181 1.69945 1.01440 1.45039 1.36803 0.86419 0.78684 0.79453 0.82742 1.19759 1.20906 1.20806 1.21282 0.93872 0.97764 0.97144 1.21397 0.93468 0.97987 0.95875 0.91787 0.91780 0.87911 0.84123 0.82803 0.92931 0.90701 0.90583 0.94617 0.93439 0.92673 0.83952 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.32 16 2 O -0.35 -3.64 9.80 -40.45 -0.40 -4.03 16 3 C 0.51 6.19 7.90 34.70 0.27 6.46 16 4 O -0.51 -7.08 16.12 -19.22 -0.31 -7.39 16 5 C -0.12 -1.46 5.88 -104.91 -0.62 -2.08 16 6 C -0.06 -0.74 9.58 -39.23 -0.38 -1.12 16 7 C -0.12 -1.49 7.41 -39.25 -0.29 -1.78 16 8 C -0.08 -1.22 5.47 -104.89 -0.57 -1.79 16 9 C 0.54 11.24 7.44 -12.24 -0.09 11.15 16 10 O -0.53 -13.25 16.31 5.35 0.09 -13.16 16 11 N -0.59 -12.31 2.86 -184.00 -0.53 -12.83 16 12 C 0.06 0.95 8.81 59.85 0.53 1.48 16 13 C 0.24 6.26 5.22 -5.19 -0.03 6.23 16 14 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 15 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 18 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C -0.08 -1.16 9.58 -39.24 -0.38 -1.53 16 23 C -0.07 -0.81 9.60 -39.23 -0.38 -1.19 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.14 1.45 7.64 -52.49 -0.40 1.05 16 28 H 0.15 1.72 4.83 -52.49 -0.25 1.46 16 29 H 0.05 0.66 7.46 -51.93 -0.39 0.28 16 30 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 31 H 0.08 0.99 4.70 -51.93 -0.24 0.75 16 32 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 33 H 0.05 1.38 7.36 -51.93 -0.38 0.99 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.14 2.02 7.95 -52.49 -0.42 1.60 16 36 H 0.14 1.34 7.60 -52.48 -0.40 0.94 16 LS Contribution 315.80 15.07 4.76 4.76 Total: -1.00 -33.96 315.80 -6.09 -40.05 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -4.14 Total: -2.12 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -1.28 Total: 3.66 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.21 Total: -38.33 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.62 Total: -24.58 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.96 -6.09 -40.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061037198.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.316 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds