Wall clock time and date at job start Mon Mar 30 2020 02:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34683 * 117.00350 * 2 1 4 4 O 1.21443 * 120.00205 * 359.97438 * 3 2 1 5 5 C 1.47925 * 120.00528 * 179.97438 * 3 2 1 6 6 C 1.39599 * 120.01086 * 180.02562 * 5 3 2 7 7 C 1.37819 * 119.99491 * 180.27811 * 6 5 3 8 8 C 1.39552 * 120.00580 * 359.51808 * 7 6 5 9 9 C 1.48044 * 119.99814 * 180.23183 * 8 7 6 10 10 O 1.21516 * 120.00072 * 147.68056 * 9 8 7 11 11 N 1.34782 * 119.99730 * 327.68183 * 9 8 7 12 12 C 1.46500 * 119.99813 * 4.33937 * 11 9 8 13 13 C 1.46499 * 119.99991 * 184.33768 * 11 9 8 14 14 C 1.50706 * 109.46887 * 90.00167 * 13 11 9 15 15 H 1.08000 * 120.00181 * 359.97438 * 14 13 11 16 16 C 1.37874 * 120.00032 * 180.02562 * 14 13 11 17 17 N 1.31521 * 119.99671 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00122 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47480 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47262 * 119.99585 * 18 16 14 21 21 H 1.48501 * 109.47168 * 239.99607 * 18 16 14 22 22 C 1.39559 * 120.01164 * 0.45959 * 8 7 6 23 23 C 1.37819 * 120.00074 * 359.79462 * 22 8 7 24 24 H 1.08999 * 109.47067 * 300.00356 * 1 2 3 25 25 H 1.08999 * 109.46686 * 60.00106 * 1 2 3 26 26 H 1.08995 * 109.47401 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.99955 * 0.02562 * 6 5 3 28 28 H 1.08001 * 119.99521 * 179.72238 * 7 6 5 29 29 H 1.09001 * 109.47077 * 95.00146 * 12 11 9 30 30 H 1.09004 * 109.46714 * 215.00022 * 12 11 9 31 31 H 1.09002 * 109.47291 * 334.99819 * 12 11 9 32 32 H 1.08997 * 109.47375 * 209.99774 * 13 11 9 33 33 H 1.08995 * 109.47084 * 330.00320 * 13 11 9 34 34 H 0.97000 * 119.99548 * 179.97438 * 17 16 14 35 35 H 1.08000 * 120.00205 * 179.77197 * 22 8 7 36 36 H 1.08009 * 119.99846 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2000 0.0000 4 8 1.4022 2.2186 -0.0005 5 6 3.5408 1.2775 0.0006 6 6 4.1747 2.5212 0.0011 7 6 5.5510 2.5930 -0.0041 8 6 6.3109 1.4225 0.0002 9 6 7.7894 1.4999 -0.0003 10 8 8.4427 0.6456 0.5654 11 7 8.4107 2.5179 -0.6283 12 6 7.6235 3.5979 -1.2284 13 6 9.8731 2.5443 -0.7106 14 6 10.3186 1.8328 -1.9623 15 1 9.5858 1.4036 -2.6294 16 6 11.6619 1.7290 -2.2552 17 7 12.5544 2.2514 -1.4425 18 14 12.2142 0.8466 -3.8061 19 1 11.0246 0.3521 -4.5446 20 1 12.9755 1.7876 -4.6666 21 1 13.0817 -0.3017 -3.4401 22 6 5.6775 0.1790 0.0001 23 6 4.3012 0.1067 0.0000 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.5867 3.4270 0.0015 28 1 6.0415 3.5552 -0.0083 29 1 7.5441 4.4249 -0.5228 30 1 8.1144 3.9427 -2.1385 31 1 6.6266 3.2297 -1.4704 32 1 10.2169 3.5782 -0.7386 33 1 10.2952 2.0445 0.1612 34 1 13.4994 2.1780 -1.6484 35 1 6.2657 -0.7267 -0.0003 36 1 3.8109 -0.8557 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061037198.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:03 Heat of formation + Delta-G solvation = -94.937053 kcal Electronic energy + Delta-G solvation = -20628.649689 eV Core-core repulsion = 17271.081473 eV Total energy + Delta-G solvation = -3357.568216 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.81233 -41.11823 -39.16730 -37.51802 -36.81261 -34.87027 -32.94769 -32.18978 -29.86257 -28.65902 -27.74536 -26.10606 -24.47463 -23.66275 -22.17185 -20.75271 -19.14327 -18.71977 -18.40048 -17.96803 -17.41572 -17.33082 -16.48205 -16.26792 -15.94853 -15.47608 -15.25631 -14.66919 -14.58972 -14.49829 -14.28821 -13.91619 -13.67578 -13.49621 -13.40154 -13.05049 -12.93360 -12.74007 -12.52335 -12.25932 -12.00662 -11.82172 -11.73057 -11.71019 -10.84803 -10.66357 -10.20753 -10.04665 -9.50836 -8.24525 -6.39541 -0.71386 0.23986 1.17549 1.37121 1.39302 1.51207 1.61408 1.87598 2.22256 2.40259 2.71084 3.05616 3.42120 3.65222 3.76774 3.84115 4.15229 4.25611 4.31847 4.33458 4.36632 4.58558 4.61970 4.73305 4.88051 4.91884 4.94498 5.02278 5.11189 5.19343 5.26160 5.29770 5.50199 5.62409 5.77874 6.02184 6.59306 6.60470 6.70056 7.19607 7.35211 8.83113 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.033572 B = 0.003501 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.835985 B = 7996.272277 C = 8219.551539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.515 3.485 4 O -0.527 6.527 5 C -0.119 4.119 6 C -0.054 4.054 7 C -0.106 4.106 8 C -0.098 4.098 9 C 0.534 3.466 10 O -0.589 6.589 11 N -0.597 5.597 12 C 0.056 3.944 13 C 0.257 3.743 14 C -0.546 4.546 15 H 0.054 0.946 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.969 3.031 19 H -0.267 1.267 20 H -0.269 1.269 21 H -0.281 1.281 22 C -0.090 4.090 23 C -0.054 4.054 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.134 0.866 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.031 0.969 33 H 0.003 0.997 34 H 0.268 0.732 35 H 0.133 0.867 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.692 -0.721 0.820 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.361 3.639 4 O -0.418 6.418 5 C -0.120 4.120 6 C -0.072 4.072 7 C -0.124 4.124 8 C -0.101 4.101 9 C 0.323 3.677 10 O -0.471 6.471 11 N -0.327 5.327 12 C -0.085 4.085 13 C 0.136 3.864 14 C -0.584 4.584 15 H 0.072 0.928 16 C -0.191 4.191 17 N -0.567 5.567 18 Si 0.793 3.207 19 H -0.191 1.191 20 H -0.194 1.194 21 H -0.207 1.207 22 C -0.109 4.109 23 C -0.072 4.072 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.152 0.848 27 H 0.179 0.821 28 H 0.189 0.811 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.049 0.951 33 H 0.021 0.979 34 H 0.077 0.923 35 H 0.151 0.849 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -23.383 -0.810 1.115 23.423 hybrid contribution 0.820 -0.376 -0.534 1.048 sum -22.563 -1.185 0.581 22.602 Atomic orbital electron populations 1.23625 0.73962 1.05999 1.02832 1.86537 1.25480 1.31517 1.83629 1.21232 0.88990 0.81667 0.71998 1.90817 1.67184 1.36802 1.46997 1.19382 0.89130 0.95513 1.07992 1.21389 0.93715 0.97489 0.94644 1.22025 0.93487 0.98885 0.98027 1.20259 0.91635 0.96270 1.01932 1.18978 0.88318 0.81409 0.79033 1.90712 1.68183 1.41184 1.46979 1.48084 1.08444 1.22979 1.53150 1.22667 0.97061 0.89510 0.99269 1.18866 0.75052 0.96588 0.95940 1.21718 0.92477 1.36674 1.07558 0.92776 1.25861 0.96493 0.96158 1.00553 1.70056 1.01896 1.46080 1.38648 0.85341 0.78301 0.78277 0.78731 1.19103 1.19377 1.20677 1.21284 0.94938 0.96913 0.97718 1.21525 0.92112 0.99190 0.94402 0.91627 0.91631 0.84831 0.82058 0.81071 0.89682 0.91247 0.87804 0.95126 0.97916 0.92295 0.84880 0.81546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.51 16 2 O -0.36 -6.21 9.80 -55.93 -0.55 -6.76 16 3 C 0.52 10.99 7.90 70.39 0.56 11.54 16 4 O -0.53 -13.30 16.12 20.02 0.32 -12.97 16 5 C -0.12 -2.53 5.88 -20.05 -0.12 -2.65 16 6 C -0.05 -1.11 9.58 22.50 0.22 -0.89 16 7 C -0.11 -2.47 7.41 22.49 0.17 -2.30 16 8 C -0.10 -3.05 5.47 -20.04 -0.11 -3.16 16 9 C 0.53 22.92 7.44 86.84 0.65 23.57 16 10 O -0.59 -31.12 16.31 -3.77 -0.06 -31.18 16 11 N -0.60 -25.45 2.86 -854.35 -2.44 -27.89 16 12 C 0.06 1.64 8.81 127.77 1.13 2.77 16 13 C 0.26 13.80 5.22 85.64 0.45 14.25 16 14 C -0.55 -31.36 9.39 25.60 0.24 -31.11 16 15 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 16 C 0.01 0.49 5.46 84.65 0.46 0.95 16 17 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 18 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 C -0.09 -2.48 9.58 22.49 0.22 -2.26 16 23 C -0.05 -1.15 9.60 22.50 0.22 -0.94 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.16 2.69 7.64 -2.91 -0.02 2.66 16 28 H 0.17 3.31 4.83 -2.91 -0.01 3.29 16 29 H 0.09 1.94 7.46 -2.39 -0.02 1.93 16 30 H 0.07 2.11 8.11 -2.38 -0.02 2.10 16 31 H 0.10 2.46 4.70 -2.39 -0.01 2.45 16 32 H 0.03 1.65 8.07 -2.39 -0.02 1.63 16 33 H 0.00 0.17 7.36 -2.39 -0.02 0.15 16 34 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 35 H 0.13 3.87 7.95 -2.91 -0.02 3.85 16 36 H 0.17 2.65 7.60 -2.91 -0.02 2.63 16 Total: -1.00 -76.56 315.80 5.95 -70.61 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.10 Total: 5.76 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 5.26 Total: 11.28 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -2.16 Total: -83.35 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -0.29 Total: -50.92 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -76.56 5.95 -70.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061037198.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.326 kcal (2) G-P(sol) polarization free energy of solvation -76.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds