Wall clock time and date at job start Mon Mar 30 2020 01:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20823 * 120.00074 * 2 1 4 4 O 1.34231 * 119.99756 * 179.97438 * 2 1 3 5 5 C 1.45200 * 116.99591 * 180.02562 * 4 2 1 6 6 C 1.50707 * 109.46740 * 180.02562 * 5 4 2 7 7 O 1.21285 * 120.00045 * 354.73123 * 6 5 4 8 8 N 1.34774 * 119.99689 * 174.72993 * 6 5 4 9 9 C 1.46504 * 119.99858 * 184.43211 * 8 6 5 10 10 C 1.50699 * 109.46734 * 269.99930 * 9 8 6 11 11 H 1.08005 * 120.00470 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99917 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00167 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00057 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.46898 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46963 * 119.99883 * 14 12 10 17 17 H 1.48496 * 109.46822 * 239.99653 * 14 12 10 18 18 C 1.39930 * 120.00453 * 4.43062 * 8 6 5 19 19 C 1.38872 * 120.06914 * 66.70882 * 18 8 6 20 20 C 1.38109 * 119.92865 * 179.97438 * 19 18 8 21 21 C 1.38280 * 120.07275 * 359.97438 * 20 19 18 22 22 C 1.38289 * 120.13927 * 0.05171 * 21 20 19 23 23 C 1.38114 * 120.06901 * 359.94782 * 22 21 20 24 24 H 1.08999 * 109.47269 * 240.00738 * 1 2 3 25 25 H 1.09002 * 109.46977 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46902 * 120.00679 * 1 2 3 27 27 H 1.08998 * 109.47229 * 60.00519 * 5 4 2 28 28 H 1.08998 * 109.47256 * 299.99981 * 5 4 2 29 29 H 1.08994 * 109.47395 * 29.99573 * 9 8 6 30 30 H 1.09001 * 109.47069 * 150.00532 * 9 8 6 31 31 H 0.96991 * 120.00637 * 180.02562 * 13 12 10 32 32 H 1.07999 * 120.03703 * 359.70435 * 19 18 8 33 33 H 1.07998 * 119.96629 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.93383 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.96184 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.03326 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1782 -1.1625 0.0005 5 6 3.6282 -1.0865 0.0011 6 6 4.2041 -2.4791 0.0010 7 8 3.4694 -3.4393 0.0969 8 7 5.5357 -2.6576 -0.1058 9 6 6.0879 -4.0110 -0.2037 10 6 6.3827 -4.5344 1.1784 11 1 6.1796 -3.9201 2.0432 12 6 6.9129 -5.7970 1.3389 13 7 7.1607 -6.5449 0.2858 14 14 7.2791 -6.4455 3.0521 15 1 6.9135 -5.4172 4.0591 16 1 6.4883 -7.6790 3.2939 17 1 8.7269 -6.7556 3.1649 18 6 6.3910 -1.5502 -0.1232 19 6 6.5238 -0.7558 1.0081 20 6 7.3691 0.3362 0.9879 21 6 8.0832 0.6386 -0.1569 22 6 7.9527 -0.1501 -1.2853 23 6 7.1091 -1.2435 -1.2715 24 1 -0.3634 -0.5137 0.8900 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5139 -0.8899 27 1 3.9638 -0.5542 0.8911 28 1 3.9645 -0.5545 -0.8889 29 1 5.3650 -4.6639 -0.6928 30 1 7.0084 -3.9866 -0.7870 31 1 7.5333 -7.4332 0.3987 32 1 5.9633 -0.9891 1.9014 33 1 7.4725 0.9547 1.8673 34 1 8.7439 1.4928 -0.1701 35 1 8.5115 0.0889 -2.1780 36 1 7.0079 -1.8594 -2.1530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061575221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:37 Heat of formation + Delta-G solvation = -87.836960 kcal Electronic energy + Delta-G solvation = -21267.393671 eV Core-core repulsion = 17910.133338 eV Total energy + Delta-G solvation = -3357.260333 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.57369 -39.75175 -38.13687 -36.35587 -34.89907 -32.76385 -30.89772 -30.65093 -29.49044 -28.69710 -26.52792 -23.11555 -22.57018 -22.11968 -21.14040 -19.23448 -17.68631 -17.44860 -16.79586 -16.47975 -16.10562 -15.75757 -15.28353 -15.04209 -14.34676 -14.22081 -14.12183 -13.23233 -13.15403 -13.07939 -13.03218 -12.50102 -12.38122 -12.28902 -12.11244 -11.52452 -11.26101 -11.10884 -10.87088 -10.70852 -10.67530 -10.59974 -10.21472 -9.78195 -9.43100 -8.73770 -8.66094 -8.48536 -7.77074 -6.10237 -4.14687 1.49577 1.59769 2.15037 2.49583 3.07824 3.27995 3.35313 3.39760 3.75069 3.97379 4.40955 4.68048 4.76621 5.07900 5.10819 5.13771 5.14804 5.24036 5.25427 5.27793 5.31717 5.55690 5.62898 5.76883 5.96424 6.20911 6.39443 6.55475 6.68688 6.71795 6.88661 7.13395 7.25665 7.36798 7.68544 7.85012 8.12073 8.18232 8.70609 8.89599 9.49913 10.98335 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.006181 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.923401 B = 4528.734505 C = 5882.970005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.457 3.543 3 O -0.518 6.518 4 O -0.332 6.332 5 C 0.050 3.950 6 C 0.514 3.486 7 O -0.503 6.503 8 N -0.555 5.555 9 C 0.250 3.750 10 C -0.526 4.526 11 H 0.059 0.941 12 C 0.063 3.937 13 N -0.894 5.894 14 Si 0.900 3.100 15 H -0.273 1.273 16 H -0.282 1.282 17 H -0.283 1.283 18 C 0.154 3.846 19 C -0.127 4.127 20 C -0.107 4.107 21 C -0.132 4.132 22 C -0.108 4.108 23 C -0.123 4.123 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.049 0.951 30 H 0.039 0.961 31 H 0.264 0.736 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.123 0.877 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 15.129 -2.209 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.301 3.699 3 O -0.407 6.407 4 O -0.247 6.247 5 C -0.027 4.027 6 C 0.300 3.700 7 O -0.376 6.376 8 N -0.285 5.285 9 C 0.133 3.867 10 C -0.565 4.565 11 H 0.077 0.923 12 C -0.139 4.139 13 N -0.533 5.533 14 Si 0.728 3.272 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.209 1.209 18 C 0.062 3.938 19 C -0.146 4.146 20 C -0.126 4.126 21 C -0.150 4.150 22 C -0.127 4.127 23 C -0.142 4.142 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.067 14.642 -2.217 15.652 hybrid contribution 0.565 -0.389 0.985 1.200 sum -4.502 14.253 -1.233 14.998 Atomic orbital electron populations 1.21622 0.86852 1.05652 1.06042 1.23953 0.92318 0.81502 0.72141 1.90686 1.70968 1.33159 1.45909 1.86560 1.20576 1.34206 1.83325 1.22894 0.77671 0.97492 1.04659 1.19764 0.82585 0.89470 0.78205 1.90735 1.58115 1.41943 1.46852 1.45895 1.03703 1.07950 1.70978 1.19503 0.94482 0.74585 0.98174 1.21383 1.42251 1.00514 0.92330 0.92261 1.24908 0.95342 0.96398 0.97288 1.69926 1.44100 1.10312 1.28951 0.86407 0.77821 0.78952 0.84068 1.19766 1.20773 1.20895 1.17793 0.94236 0.88574 0.93216 1.21375 0.99996 0.96068 0.97193 1.20979 0.96492 0.96919 0.98212 1.21089 1.00257 1.00121 0.93521 1.20987 0.98290 0.94974 0.98453 1.21310 0.97823 0.97560 0.97554 0.88031 0.88136 0.88079 0.88408 0.88690 0.93318 0.94287 0.92646 0.85896 0.85980 0.86238 0.85934 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 10.43 36.01 0.38 -0.81 16 2 C 0.46 6.24 8.07 36.01 0.29 6.53 16 3 O -0.52 -8.32 16.83 -18.75 -0.32 -8.64 16 4 O -0.33 -5.49 9.76 -45.89 -0.45 -5.94 16 5 C 0.05 0.85 4.61 36.01 0.17 1.02 16 6 C 0.51 10.98 7.62 -10.98 -0.08 10.90 16 7 O -0.50 -12.76 16.13 -14.05 -0.23 -12.98 16 8 N -0.56 -11.98 2.51 -114.73 -0.29 -12.27 16 9 C 0.25 6.48 5.07 -5.19 -0.03 6.45 16 10 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 11 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 14 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.15 2.79 4.43 -83.69 -0.37 2.42 16 19 C -0.13 -2.06 8.45 -39.39 -0.33 -2.39 16 20 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 21 C -0.13 -1.63 10.04 -39.55 -0.40 -2.03 16 22 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 23 C -0.12 -1.95 9.64 -39.39 -0.38 -2.33 16 24 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.10 0.67 8.12 -51.93 -0.42 0.25 16 26 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.10 1.55 6.96 -51.93 -0.36 1.19 16 28 H 0.10 1.48 8.02 -51.93 -0.42 1.06 16 29 H 0.05 1.40 7.49 -51.93 -0.39 1.01 16 30 H 0.04 1.03 7.82 -51.93 -0.41 0.62 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.12 1.99 7.89 -52.49 -0.41 1.58 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 323.60 15.07 4.88 4.88 Total: -1.00 -34.35 323.60 -7.15 -41.51 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -4.49 Total: -0.42 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -1.97 Total: 2.58 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.45 Total: -37.85 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.99 Total: -27.56 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.35 -7.15 -41.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061575221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.331 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds