Wall clock time and date at job start Mon Mar 30 2020 01:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20823 * 120.00074 * 2 1 4 4 O 1.34231 * 119.99756 * 179.97438 * 2 1 3 5 5 C 1.45200 * 116.99591 * 180.02562 * 4 2 1 6 6 C 1.50707 * 109.46740 * 180.02562 * 5 4 2 7 7 O 1.21285 * 120.00045 * 354.73123 * 6 5 4 8 8 N 1.34774 * 119.99689 * 174.72993 * 6 5 4 9 9 C 1.46504 * 119.99858 * 184.43211 * 8 6 5 10 10 C 1.50699 * 109.46734 * 269.99930 * 9 8 6 11 11 H 1.08005 * 120.00470 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99917 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00167 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 120.00057 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.46898 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46963 * 119.99883 * 14 12 10 17 17 H 1.48496 * 109.46822 * 239.99653 * 14 12 10 18 18 C 1.39930 * 120.00453 * 4.43062 * 8 6 5 19 19 C 1.38872 * 120.06914 * 66.70882 * 18 8 6 20 20 C 1.38109 * 119.92865 * 179.97438 * 19 18 8 21 21 C 1.38280 * 120.07275 * 359.97438 * 20 19 18 22 22 C 1.38289 * 120.13927 * 0.05171 * 21 20 19 23 23 C 1.38114 * 120.06901 * 359.94782 * 22 21 20 24 24 H 1.08999 * 109.47269 * 240.00738 * 1 2 3 25 25 H 1.09002 * 109.46977 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.46902 * 120.00679 * 1 2 3 27 27 H 1.08998 * 109.47229 * 60.00519 * 5 4 2 28 28 H 1.08998 * 109.47256 * 299.99981 * 5 4 2 29 29 H 1.08994 * 109.47395 * 29.99573 * 9 8 6 30 30 H 1.09001 * 109.47069 * 150.00532 * 9 8 6 31 31 H 0.96991 * 120.00637 * 180.02562 * 13 12 10 32 32 H 1.07999 * 120.03703 * 359.70435 * 19 18 8 33 33 H 1.07998 * 119.96629 * 179.97438 * 20 19 18 34 34 H 1.07997 * 119.93383 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.96184 * 179.97438 * 22 21 20 36 36 H 1.08001 * 120.03326 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1782 -1.1625 0.0005 5 6 3.6282 -1.0865 0.0011 6 6 4.2041 -2.4791 0.0010 7 8 3.4694 -3.4393 0.0969 8 7 5.5357 -2.6576 -0.1058 9 6 6.0879 -4.0110 -0.2037 10 6 6.3827 -4.5344 1.1784 11 1 6.1796 -3.9201 2.0432 12 6 6.9129 -5.7970 1.3389 13 7 7.1607 -6.5449 0.2858 14 14 7.2791 -6.4455 3.0521 15 1 6.9135 -5.4172 4.0591 16 1 6.4883 -7.6790 3.2939 17 1 8.7269 -6.7556 3.1649 18 6 6.3910 -1.5502 -0.1232 19 6 6.5238 -0.7558 1.0081 20 6 7.3691 0.3362 0.9879 21 6 8.0832 0.6386 -0.1569 22 6 7.9527 -0.1501 -1.2853 23 6 7.1091 -1.2435 -1.2715 24 1 -0.3634 -0.5137 0.8900 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5139 -0.8899 27 1 3.9638 -0.5542 0.8911 28 1 3.9645 -0.5545 -0.8889 29 1 5.3650 -4.6639 -0.6928 30 1 7.0084 -3.9866 -0.7870 31 1 7.5333 -7.4332 0.3987 32 1 5.9633 -0.9891 1.9014 33 1 7.4725 0.9547 1.8673 34 1 8.7439 1.4928 -0.1701 35 1 8.5115 0.0889 -2.1780 36 1 7.0079 -1.8594 -2.1530 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061575221.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:37 Heat of formation + Delta-G solvation = -108.237270 kcal Electronic energy + Delta-G solvation = -21268.278295 eV Core-core repulsion = 17910.133338 eV Total energy + Delta-G solvation = -3358.144956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.90083 -41.11107 -39.53867 -37.62164 -36.57520 -34.85027 -32.06126 -31.67400 -30.95719 -30.05527 -28.31247 -25.01678 -23.88317 -23.37619 -22.28912 -20.73064 -18.94547 -18.85663 -18.66924 -17.94162 -17.35591 -17.25208 -16.82681 -16.50138 -16.03520 -15.50874 -15.41418 -14.62994 -14.61375 -14.33497 -14.13497 -13.93068 -13.65645 -13.42257 -13.38452 -13.16518 -13.05262 -12.70414 -12.48710 -12.21763 -12.16454 -11.98373 -11.75133 -11.73167 -11.11129 -10.69432 -10.22044 -9.87068 -9.31747 -8.27789 -6.42113 0.29094 0.46269 1.08211 1.24891 1.33876 1.36149 1.42445 1.49774 2.26668 2.38906 2.81701 3.02728 3.29365 3.66066 3.86317 3.93752 4.05035 4.08307 4.29135 4.48808 4.56150 4.56856 4.60446 4.67758 4.89342 4.95408 5.04460 5.11717 5.32414 5.36467 5.49767 5.59006 5.61456 5.69319 5.95957 6.01462 6.46999 6.61396 6.64088 7.05987 7.28546 8.80196 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.013485 B = 0.006181 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.923401 B = 4528.734505 C = 5882.970005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.454 3.546 3 O -0.545 6.545 4 O -0.351 6.351 5 C 0.067 3.933 6 C 0.508 3.492 7 O -0.557 6.557 8 N -0.555 5.555 9 C 0.266 3.734 10 C -0.543 4.543 11 H 0.051 0.949 12 C 0.012 3.988 13 N -0.926 5.926 14 Si 0.968 3.032 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.268 1.268 18 C 0.114 3.886 19 C -0.140 4.140 20 C -0.103 4.103 21 C -0.117 4.117 22 C -0.102 4.102 23 C -0.137 4.137 24 H 0.118 0.882 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.110 0.890 28 H 0.110 0.890 29 H 0.009 0.991 30 H 0.029 0.971 31 H 0.269 0.731 32 H 0.114 0.886 33 H 0.154 0.846 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.153 17.645 -1.364 18.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.300 3.700 3 O -0.435 6.435 4 O -0.267 6.267 5 C -0.010 4.010 6 C 0.296 3.704 7 O -0.435 6.435 8 N -0.283 5.283 9 C 0.147 3.853 10 C -0.582 4.582 11 H 0.069 0.931 12 C -0.188 4.188 13 N -0.565 5.565 14 Si 0.792 3.208 15 H -0.193 1.193 16 H -0.203 1.203 17 H -0.193 1.193 18 C 0.023 3.977 19 C -0.160 4.160 20 C -0.122 4.122 21 C -0.135 4.135 22 C -0.120 4.120 23 C -0.156 4.156 24 H 0.136 0.864 25 H 0.139 0.861 26 H 0.137 0.863 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.027 0.973 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.132 0.868 33 H 0.171 0.829 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.292 17.212 -1.381 17.792 hybrid contribution 0.367 -1.063 0.662 1.305 sum -3.925 16.149 -0.719 16.635 Atomic orbital electron populations 1.21820 0.82364 1.07547 1.07618 1.25076 0.94011 0.80183 0.70718 1.90666 1.71839 1.33696 1.47283 1.86591 1.20028 1.36274 1.83827 1.22611 0.78516 0.94054 1.05820 1.20529 0.82220 0.90856 0.76803 1.90687 1.59309 1.43979 1.49531 1.45685 1.04539 1.07582 1.70504 1.18940 0.92810 0.76749 0.96797 1.21607 1.42631 1.01073 0.92846 0.93070 1.25813 0.94923 0.96509 1.01516 1.70033 1.44544 1.10767 1.31154 0.85356 0.78282 0.78182 0.78944 1.19330 1.20328 1.19327 1.18071 0.95783 0.88585 0.95219 1.21420 1.01145 0.97178 0.96238 1.21362 0.95062 0.95825 0.99901 1.21601 0.99253 1.00388 0.92255 1.21381 0.97047 0.93445 1.00167 1.21417 0.98547 0.98926 0.96754 0.86381 0.86086 0.86267 0.87181 0.87231 0.97311 0.95319 0.92193 0.86829 0.82883 0.82111 0.82648 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 10.43 71.24 0.74 -1.20 16 2 C 0.45 12.00 8.07 71.24 0.57 12.57 16 3 O -0.54 -16.95 16.83 21.97 0.37 -16.58 16 4 O -0.35 -11.75 9.76 -45.09 -0.44 -12.19 16 5 C 0.07 2.34 4.61 71.24 0.33 2.67 16 6 C 0.51 22.96 7.62 87.66 0.67 23.63 16 7 O -0.56 -30.20 16.13 15.70 0.25 -29.95 16 8 N -0.55 -25.32 2.51 -635.30 -1.59 -26.92 16 9 C 0.27 14.75 5.07 85.63 0.43 15.18 16 10 C -0.54 -32.01 9.39 25.60 0.24 -31.77 16 11 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 12 C 0.01 0.68 5.46 84.66 0.46 1.15 16 13 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 14 Si 0.97 45.44 29.54 68.60 2.03 47.47 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 17 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 18 C 0.11 4.22 4.43 38.15 0.17 4.39 16 19 C -0.14 -4.50 8.45 22.39 0.19 -4.31 16 20 C -0.10 -2.46 10.04 22.25 0.22 -2.24 16 21 C -0.12 -2.41 10.04 22.29 0.22 -2.19 16 22 C -0.10 -2.39 10.04 22.25 0.22 -2.16 16 23 C -0.14 -4.34 9.64 22.39 0.22 -4.12 16 24 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.12 1.25 8.12 -2.39 -0.02 1.23 16 26 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.11 3.53 6.96 -2.39 -0.02 3.52 16 28 H 0.11 3.46 8.02 -2.39 -0.02 3.44 16 29 H 0.01 0.55 7.49 -2.39 -0.02 0.53 16 30 H 0.03 1.62 7.82 -2.39 -0.02 1.60 16 31 H 0.27 15.18 8.31 -92.72 -0.77 14.41 16 32 H 0.11 3.75 7.89 -2.91 -0.02 3.73 16 33 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 35 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 36 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -78.78 323.60 6.67 -72.11 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 1.08 Total: 10.25 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 4.70 Total: 11.60 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -1.31 Total: -82.69 kcal Atomic # 8 Polarization: -58.91 SS G_CDS: 0.18 Total: -58.73 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -78.78 6.67 -72.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061575221.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.129 kcal (2) G-P(sol) polarization free energy of solvation -78.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds