Wall clock time and date at job start Mon Mar 30 2020 01:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47459 * 2 1 4 4 C 1.50695 * 109.47461 * 120.00198 * 2 1 3 5 5 H 1.08003 * 120.00195 * 119.99395 * 4 2 1 6 6 C 1.37882 * 119.99965 * 300.00335 * 4 2 1 7 7 N 1.31513 * 119.99853 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99679 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47402 * 60.00029 * 8 6 4 10 10 H 1.48508 * 109.46413 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47444 * 299.99450 * 8 6 4 12 12 N 1.46505 * 109.47209 * 240.00501 * 2 1 3 13 13 C 1.46504 * 119.99823 * 299.99983 * 12 2 1 14 14 C 1.34777 * 120.00230 * 119.99758 * 12 2 1 15 15 O 1.21582 * 119.99938 * 4.33680 * 14 12 2 16 16 C 1.47600 * 120.00001 * 184.33388 * 14 12 2 17 17 C 1.39710 * 120.08529 * 327.81961 * 16 14 12 18 18 C 1.37765 * 120.00781 * 179.75149 * 17 16 14 19 19 C 1.38863 * 120.21625 * 0.44375 * 18 17 16 20 20 C 1.39549 * 120.05304 * 359.55437 * 19 18 17 21 21 C 1.38116 * 119.98149 * 0.22579 * 20 19 18 22 22 O 1.36545 * 108.59049 * 180.23779 * 20 19 18 23 23 C 1.43973 * 105.45022 * 342.69867 * 22 20 19 24 24 O 1.36360 * 131.35241 * 179.86844 * 19 18 17 25 25 H 1.09007 * 109.47222 * 59.99635 * 1 2 3 26 26 H 1.09002 * 109.47237 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47164 * 300.00103 * 1 2 3 28 28 H 0.97001 * 119.99362 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46970 * 274.77336 * 13 12 2 30 30 H 1.08998 * 109.47097 * 34.76726 * 13 12 2 31 31 H 1.08993 * 109.46958 * 154.76860 * 13 12 2 32 32 H 1.07996 * 119.99371 * 359.97162 * 17 16 14 33 33 H 1.07995 * 119.89305 * 180.29720 * 18 17 16 34 34 H 1.08003 * 120.04669 * 180.02562 * 21 20 19 35 35 H 1.09007 * 110.56138 * 268.61341 * 23 22 20 36 36 H 1.08998 * 110.56833 * 145.75581 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0080 10 1 1.8270 -0.4201 5.2204 11 1 1.8260 -2.5204 4.0076 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.1520 1.1031 -1.8528 16 6 3.2061 -0.7003 -3.3348 17 6 3.4148 -2.0815 -3.3582 18 6 3.7953 -2.7011 -4.5284 19 6 3.9815 -1.9559 -5.6852 20 6 3.7745 -0.5760 -5.6684 21 6 3.3887 0.0500 -4.4993 22 8 4.0164 -0.0843 -6.9191 23 6 4.7668 -1.1098 -7.5959 24 8 4.3517 -2.3248 -6.9447 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7089 1.1611 3.4845 29 1 2.3680 -2.7374 -0.9008 30 1 0.6555 -2.2789 -1.0599 31 1 1.7064 -2.3066 -2.4962 32 1 3.2745 -2.6640 -2.4597 33 1 3.9515 -3.7696 -4.5455 34 1 3.2278 1.1178 -4.4852 35 1 5.8372 -0.9512 -7.4639 36 1 4.5104 -1.1362 -8.6549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093911.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:01 Heat of formation + Delta-G solvation = -44.648937 kcal Electronic energy + Delta-G solvation = -21341.710384 eV Core-core repulsion = 17986.322825 eV Total energy + Delta-G solvation = -3355.387559 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.28787 -39.66206 -37.17719 -36.44118 -35.45856 -32.98800 -30.77718 -30.66299 -28.86505 -26.47386 -26.05830 -25.23789 -23.71936 -22.91729 -21.24618 -19.15538 -18.26536 -17.68900 -17.45258 -16.55031 -16.24237 -15.66649 -15.19437 -14.70381 -14.52159 -14.48687 -13.95535 -13.79592 -13.44027 -13.12355 -12.98945 -12.75941 -12.55481 -12.32942 -11.57579 -11.55056 -11.18100 -11.04261 -10.82187 -10.74807 -10.64648 -10.28729 -10.17095 -9.22906 -9.11590 -8.95134 -8.44492 -8.14105 -7.65209 -6.08458 -4.16703 0.80873 1.14736 2.53314 3.14940 3.24177 3.27675 3.33027 3.35000 3.79133 3.94545 4.34299 4.38963 4.46852 4.66719 4.89418 4.99979 5.05613 5.12687 5.23086 5.41403 5.64640 5.88507 5.97364 5.99595 6.07615 6.17844 6.24249 6.31168 6.74361 6.80017 6.97618 7.02193 7.37458 7.48274 7.68815 7.98540 8.16192 8.44841 8.78985 8.96263 9.49606 10.96905 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037594 B = 0.004040 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.618384 B = 6929.825165 C = 7205.057287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.065 0.935 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.582 5.582 13 C 0.066 3.934 14 C 0.547 3.453 15 O -0.543 6.543 16 C -0.108 4.108 17 C -0.089 4.089 18 C -0.110 4.110 19 C 0.044 3.956 20 C 0.019 3.981 21 C -0.048 4.048 22 O -0.308 6.308 23 C 0.213 3.787 24 O -0.310 6.310 25 H 0.012 0.988 26 H 0.031 0.969 27 H 0.095 0.905 28 H 0.264 0.736 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.083 0.917 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.301 -7.815 -16.374 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.083 0.917 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.312 5.312 13 C -0.077 4.077 14 C 0.334 3.666 15 O -0.423 6.423 16 C -0.111 4.111 17 C -0.107 4.107 18 C -0.128 4.128 19 C -0.001 4.001 20 C -0.025 4.025 21 C -0.067 4.067 22 O -0.224 6.224 23 C 0.101 3.899 24 O -0.226 6.226 25 H 0.031 0.969 26 H 0.050 0.950 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.179 0.821 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.101 0.899 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.317 -7.091 -16.287 18.280 hybrid contribution 0.426 -0.554 0.583 0.911 sum 4.744 -7.645 -15.703 18.098 Atomic orbital electron populations 1.22108 0.98039 0.99509 1.00988 1.19006 0.90936 0.94589 0.79660 0.91689 1.21256 1.31998 1.13059 0.90202 0.92249 1.24890 0.94913 0.94964 0.98965 1.69866 1.36246 1.22542 1.23920 0.86538 0.79257 0.79545 0.81940 1.20223 1.21176 1.20219 1.48152 1.48157 1.11665 1.23191 1.22226 1.01878 0.83319 1.00257 1.17959 0.79747 0.86035 0.82897 1.90762 1.55772 1.18333 1.77395 1.19933 1.03112 0.93659 0.94426 1.21833 0.96475 0.93855 0.98543 1.20019 1.03798 1.00470 0.88527 1.20043 1.01777 0.92295 0.85992 1.19563 1.05292 0.91263 0.86393 1.20026 0.98493 1.00979 0.87244 1.87385 1.71828 1.41343 1.21870 1.25611 0.96082 0.71452 0.96750 1.87309 1.81361 1.32008 1.21888 0.96873 0.94975 0.88658 0.92585 0.92479 0.90967 0.91052 0.82107 0.84242 0.83787 0.89905 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 8.94 37.16 0.33 -3.15 16 2 C 0.26 6.50 2.63 -69.08 -0.18 6.32 16 3 H 0.07 1.90 6.91 -51.93 -0.36 1.54 16 4 C -0.53 -14.00 8.37 -34.44 -0.29 -14.29 16 5 H 0.06 1.54 7.51 -52.48 -0.39 1.14 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.85 11.32 55.43 0.63 -24.23 16 8 Si 0.90 20.78 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.58 -12.22 2.75 -176.47 -0.49 -12.71 16 13 C 0.07 1.06 8.09 59.85 0.48 1.55 16 14 C 0.55 11.48 7.43 -12.44 -0.09 11.39 16 15 O -0.54 -13.56 16.09 5.29 0.09 -13.47 16 16 C -0.11 -1.77 5.47 -104.97 -0.57 -2.35 16 17 C -0.09 -1.17 7.41 -39.20 -0.29 -1.46 16 18 C -0.11 -1.28 10.04 -39.52 -0.40 -1.68 16 19 C 0.04 0.57 7.16 -38.86 -0.28 0.29 16 20 C 0.02 0.27 7.14 -39.14 -0.28 -0.01 16 21 C -0.05 -0.75 9.61 -39.07 -0.38 -1.12 16 22 O -0.31 -3.95 11.41 -45.84 -0.52 -4.47 16 23 C 0.21 1.91 8.88 101.05 0.90 2.81 16 24 O -0.31 -3.62 11.39 -45.23 -0.52 -4.13 16 25 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 26 H 0.03 0.69 6.69 -51.93 -0.35 0.34 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.06 0.85 7.30 -51.93 -0.38 0.47 16 30 H 0.07 1.16 6.45 -51.93 -0.33 0.83 16 31 H 0.07 0.94 4.71 -51.93 -0.24 0.69 16 32 H 0.16 1.91 4.82 -52.49 -0.25 1.66 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.14 2.28 7.95 -52.48 -0.42 1.86 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 299.48 15.07 4.51 4.51 Total: -1.00 -31.94 299.48 -6.33 -38.27 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -3.87 Total: 0.51 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -1.14 Total: -0.04 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.14 Total: -36.93 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.95 Total: -22.08 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.94 -6.33 -38.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093911.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.378 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds