Wall clock time and date at job start Mon Mar 30 2020 01:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47459 * 2 1 4 4 C 1.50695 * 109.47461 * 120.00198 * 2 1 3 5 5 H 1.08003 * 120.00195 * 119.99395 * 4 2 1 6 6 C 1.37882 * 119.99965 * 300.00335 * 4 2 1 7 7 N 1.31513 * 119.99853 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99679 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47402 * 60.00029 * 8 6 4 10 10 H 1.48508 * 109.46413 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47444 * 299.99450 * 8 6 4 12 12 N 1.46505 * 109.47209 * 240.00501 * 2 1 3 13 13 C 1.46504 * 119.99823 * 299.99983 * 12 2 1 14 14 C 1.34777 * 120.00230 * 119.99758 * 12 2 1 15 15 O 1.21582 * 119.99938 * 4.33680 * 14 12 2 16 16 C 1.47600 * 120.00001 * 184.33388 * 14 12 2 17 17 C 1.39710 * 120.08529 * 327.81961 * 16 14 12 18 18 C 1.37765 * 120.00781 * 179.75149 * 17 16 14 19 19 C 1.38863 * 120.21625 * 0.44375 * 18 17 16 20 20 C 1.39549 * 120.05304 * 359.55437 * 19 18 17 21 21 C 1.38116 * 119.98149 * 0.22579 * 20 19 18 22 22 O 1.36545 * 108.59049 * 180.23779 * 20 19 18 23 23 C 1.43973 * 105.45022 * 342.69867 * 22 20 19 24 24 O 1.36360 * 131.35241 * 179.86844 * 19 18 17 25 25 H 1.09007 * 109.47222 * 59.99635 * 1 2 3 26 26 H 1.09002 * 109.47237 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47164 * 300.00103 * 1 2 3 28 28 H 0.97001 * 119.99362 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46970 * 274.77336 * 13 12 2 30 30 H 1.08998 * 109.47097 * 34.76726 * 13 12 2 31 31 H 1.08993 * 109.46958 * 154.76860 * 13 12 2 32 32 H 1.07996 * 119.99371 * 359.97162 * 17 16 14 33 33 H 1.07995 * 119.89305 * 180.29720 * 18 17 16 34 34 H 1.08003 * 120.04669 * 180.02562 * 21 20 19 35 35 H 1.09007 * 110.56138 * 268.61341 * 23 22 20 36 36 H 1.08998 * 110.56833 * 145.75581 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0080 10 1 1.8270 -0.4201 5.2204 11 1 1.8260 -2.5204 4.0076 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.1520 1.1031 -1.8528 16 6 3.2061 -0.7003 -3.3348 17 6 3.4148 -2.0815 -3.3582 18 6 3.7953 -2.7011 -4.5284 19 6 3.9815 -1.9559 -5.6852 20 6 3.7745 -0.5760 -5.6684 21 6 3.3887 0.0500 -4.4993 22 8 4.0164 -0.0843 -6.9191 23 6 4.7668 -1.1098 -7.5959 24 8 4.3517 -2.3248 -6.9447 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7089 1.1611 3.4845 29 1 2.3680 -2.7374 -0.9008 30 1 0.6555 -2.2789 -1.0599 31 1 1.7064 -2.3066 -2.4962 32 1 3.2745 -2.6640 -2.4597 33 1 3.9515 -3.7696 -4.5455 34 1 3.2278 1.1178 -4.4852 35 1 5.8372 -0.9512 -7.4639 36 1 4.5104 -1.1362 -8.6549 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093911.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:00 Heat of formation + Delta-G solvation = -65.937035 kcal Electronic energy + Delta-G solvation = -21342.633506 eV Core-core repulsion = 17986.322825 eV Total energy + Delta-G solvation = -3356.310681 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.23191 -41.15298 -38.42855 -37.38920 -37.21284 -34.86389 -32.19929 -31.85166 -30.35475 -27.89805 -27.29022 -26.90080 -24.99088 -23.96895 -22.83172 -20.68176 -19.41856 -18.76244 -18.49287 -18.32120 -17.52930 -17.14937 -16.71198 -16.17752 -16.07050 -15.54414 -15.11429 -14.94529 -14.78812 -14.43590 -14.29900 -14.04364 -13.82620 -13.77734 -13.46173 -12.96456 -12.79082 -12.70151 -12.60097 -12.20803 -12.15791 -12.03998 -11.75447 -11.17578 -10.80728 -10.49432 -10.03471 -9.38652 -9.15682 -8.12496 -6.29265 -0.32994 0.09489 1.44519 1.47200 1.52410 1.54346 1.88025 2.18598 2.43361 2.52874 2.62569 3.15861 3.32329 3.56644 3.79381 3.97788 3.98671 4.07588 4.22810 4.41281 4.46359 4.68884 4.74161 4.85650 4.89663 4.91669 5.01724 5.04512 5.07710 5.15950 5.23193 5.47246 5.62033 5.66969 6.00545 6.02942 6.16120 6.74047 6.77725 7.25471 7.44441 8.91953 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037594 B = 0.004040 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.618384 B = 6929.825165 C = 7205.057287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.260 3.740 3 H 0.009 0.991 4 C -0.538 4.538 5 H 0.066 0.934 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.260 1.260 12 N -0.587 5.587 13 C 0.061 3.939 14 C 0.540 3.460 15 O -0.601 6.601 16 C -0.127 4.127 17 C -0.077 4.077 18 C -0.094 4.094 19 C 0.052 3.948 20 C 0.012 3.988 21 C -0.063 4.063 22 O -0.325 6.325 23 C 0.203 3.797 24 O -0.311 6.311 25 H 0.019 0.981 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.264 0.736 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.180 0.820 33 H 0.180 0.820 34 H 0.126 0.874 35 H 0.106 0.894 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.100 -11.319 -17.788 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.159 3.841 3 H 0.027 0.973 4 C -0.577 4.577 5 H 0.084 0.916 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.184 1.184 12 N -0.316 5.316 13 C -0.081 4.081 14 C 0.329 3.671 15 O -0.484 6.484 16 C -0.130 4.130 17 C -0.095 4.095 18 C -0.112 4.112 19 C 0.007 3.993 20 C -0.032 4.032 21 C -0.083 4.083 22 O -0.242 6.242 23 C 0.093 3.907 24 O -0.227 6.227 25 H 0.038 0.962 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.123 0.877 32 H 0.197 0.803 33 H 0.197 0.803 34 H 0.144 0.856 35 H 0.123 0.877 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 5.111 -10.646 -17.738 21.309 hybrid contribution 0.237 0.552 0.849 1.039 sum 5.348 -10.094 -16.889 20.390 Atomic orbital electron populations 1.21898 0.96898 1.00425 1.00029 1.18616 0.91757 0.92296 0.81467 0.97281 1.21544 1.32035 1.13212 0.90877 0.91623 1.25755 0.95041 0.95623 1.02087 1.70022 1.37325 1.23930 1.24498 0.85484 0.78369 0.79059 0.77950 1.20291 1.21171 1.18407 1.48117 1.47935 1.13576 1.21966 1.22559 1.02292 0.80377 1.02838 1.18667 0.78840 0.85498 0.84068 1.90715 1.57932 1.20993 1.78767 1.19494 1.06134 0.95107 0.92279 1.21958 0.95488 0.92093 0.99938 1.20362 1.01660 1.02144 0.87064 1.20283 1.00487 0.91650 0.86909 1.19527 1.05195 0.92068 0.86415 1.19870 0.99863 1.00336 0.88220 1.87370 1.72481 1.42952 1.21349 1.26212 0.97012 0.69547 0.97942 1.87311 1.81158 1.33134 1.21092 0.96201 0.92940 0.91204 0.92657 0.90785 0.90881 0.87669 0.80345 0.80254 0.85627 0.87671 0.81556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.45 8.94 71.98 0.64 -5.81 16 2 C 0.26 13.61 2.63 44.24 0.12 13.72 16 3 H 0.01 0.58 6.91 -2.39 -0.02 0.56 16 4 C -0.54 -28.93 8.37 25.60 0.21 -28.72 16 5 H 0.07 3.36 7.51 -2.91 -0.02 3.34 16 6 C 0.01 0.79 5.30 84.66 0.45 1.24 16 7 N -0.92 -52.94 11.32 21.45 0.24 -52.70 16 8 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 9 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 12 N -0.59 -24.98 2.75 -830.49 -2.29 -27.27 16 13 C 0.06 1.81 8.09 127.77 1.03 2.85 16 14 C 0.54 23.54 7.43 86.71 0.64 24.18 16 15 O -0.60 -32.23 16.09 -3.98 -0.06 -32.29 16 16 C -0.13 -4.15 5.47 -20.09 -0.11 -4.26 16 17 C -0.08 -1.81 7.41 22.51 0.17 -1.64 16 18 C -0.09 -1.81 10.04 22.31 0.22 -1.58 16 19 C 0.05 1.18 7.16 22.74 0.16 1.35 16 20 C 0.01 0.33 7.14 22.56 0.16 0.49 16 21 C -0.06 -2.02 9.61 22.60 0.22 -1.80 16 22 O -0.32 -7.81 11.41 -76.59 -0.87 -8.68 16 23 C 0.20 2.98 8.88 113.37 1.01 3.98 16 24 O -0.31 -6.07 11.39 -74.42 -0.85 -6.92 16 25 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.05 2.25 6.69 -2.39 -0.02 2.24 16 27 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 28 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.07 1.99 7.30 -2.38 -0.02 1.97 16 30 H 0.07 2.19 6.45 -2.39 -0.02 2.17 16 31 H 0.11 2.43 4.71 -2.39 -0.01 2.42 16 32 H 0.18 3.55 4.82 -2.91 -0.01 3.54 16 33 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.13 4.33 7.95 -2.91 -0.02 4.31 16 35 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.17 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -73.63 299.48 4.25 -69.39 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.12 Total: 9.92 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: 4.93 Total: 4.00 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -2.04 Total: -79.97 kcal Atomic # 8 Polarization: -46.10 SS G_CDS: -1.79 Total: -47.89 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -73.63 4.25 -69.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093911.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.449 kcal (2) G-P(sol) polarization free energy of solvation -73.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds