Wall clock time and date at job start Mon Mar 30 2020 01:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47333 * 2 1 4 4 C 1.50697 * 109.47026 * 120.00259 * 2 1 3 5 5 H 1.08005 * 120.00075 * 120.00027 * 4 2 1 6 6 C 1.37878 * 119.99634 * 299.99400 * 4 2 1 7 7 N 1.31510 * 120.00246 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99667 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47242 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47245 * 120.00255 * 8 6 4 11 11 H 1.48505 * 109.46860 * 240.00266 * 8 6 4 12 12 N 1.46505 * 109.46859 * 239.99871 * 2 1 3 13 13 C 1.46504 * 120.00055 * 300.00141 * 12 2 1 14 14 C 1.34772 * 119.99878 * 119.99923 * 12 2 1 15 15 O 1.21524 * 120.00247 * 4.88275 * 14 12 2 16 16 C 1.48044 * 120.00080 * 184.87636 * 14 12 2 17 17 C 1.39552 * 119.99686 * 320.66376 * 16 14 12 18 18 C 1.37816 * 120.00921 * 179.72055 * 17 16 14 19 19 C 1.39599 * 119.98975 * 0.25494 * 18 17 16 20 20 C 1.47930 * 119.99922 * 180.02562 * 19 18 17 21 21 O 1.21444 * 120.00521 * 0.02562 * 20 19 18 22 22 O 1.34698 * 119.99651 * 179.97438 * 20 19 18 23 23 C 1.39594 * 119.99186 * 0.02562 * 19 18 17 24 24 C 1.37809 * 119.99830 * 359.97438 * 23 19 18 25 25 H 1.09006 * 109.47002 * 59.99641 * 1 2 3 26 26 H 1.08998 * 109.47333 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46579 * 300.00145 * 1 2 3 28 28 H 0.97003 * 119.99753 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.46759 * 265.65479 * 13 12 2 30 30 H 1.08997 * 109.46718 * 25.65525 * 13 12 2 31 31 H 1.09001 * 109.46833 * 145.65097 * 13 12 2 32 32 H 1.08000 * 119.99371 * 359.97438 * 17 16 14 33 33 H 1.08007 * 119.99958 * 180.27504 * 18 17 16 34 34 H 0.96693 * 116.99661 * 179.97438 * 22 20 19 35 35 H 1.08007 * 120.00133 * 180.02562 * 23 19 18 36 36 H 1.07995 * 120.00062 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2393 2.4827 7 7 0.9429 0.8297 2.6033 8 14 2.3225 -1.1196 4.0079 9 1 3.1473 -2.2864 3.6037 10 1 3.1474 -0.1859 4.8160 11 1 1.1678 -1.5866 4.8164 12 7 2.0183 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 6 2.7931 -0.0357 -2.0834 15 8 3.1601 1.0987 -1.8485 16 6 3.1973 -0.6983 -3.3441 17 6 3.5414 -2.0507 -3.3422 18 6 3.9121 -2.6692 -4.5167 19 6 3.9486 -1.9413 -5.7073 20 6 4.3460 -2.6051 -6.9682 21 8 4.6401 -3.7834 -6.9677 22 8 4.3808 -1.9028 -8.1170 23 6 3.6101 -0.5870 -5.7079 24 6 3.2394 0.0310 -4.5332 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 0.7083 1.1609 3.4844 29 1 2.4540 -2.7362 -1.0395 30 1 0.7276 -2.3204 -0.9192 31 1 1.5480 -2.2665 -2.4979 32 1 3.5131 -2.6138 -2.4211 33 1 4.1741 -3.7171 -4.5159 34 1 4.6469 -2.3796 -8.9151 35 1 3.6379 -0.0238 -6.6290 36 1 2.9771 1.0786 -4.5337 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063097785.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:07 Heat of formation + Delta-G solvation = -111.643389 kcal Electronic energy + Delta-G solvation = -20953.526756 eV Core-core repulsion = 17595.234099 eV Total energy + Delta-G solvation = -3358.292657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.68634 -40.98079 -39.12990 -37.25701 -37.09800 -34.95560 -32.95636 -32.17407 -30.95013 -27.89161 -27.31884 -26.45363 -23.76117 -23.53084 -22.10308 -20.52243 -19.20657 -18.63301 -18.45890 -17.98908 -17.41133 -16.68541 -16.44429 -16.36058 -15.92887 -15.42252 -15.16691 -14.64613 -14.54874 -14.34918 -14.07032 -13.74766 -13.49209 -13.45605 -12.98993 -12.89128 -12.71463 -12.63999 -12.57531 -12.22806 -12.13094 -12.06545 -11.78430 -11.18039 -10.86113 -10.53617 -10.18920 -10.07351 -9.41052 -8.15472 -6.31897 -0.67780 0.25617 1.23485 1.41519 1.43634 1.54541 1.87919 1.99545 2.21098 2.45029 2.70141 3.13070 3.48126 3.71273 3.85334 4.05815 4.18240 4.34085 4.39296 4.58126 4.65984 4.74414 4.87727 4.92563 5.00289 5.02841 5.05437 5.16634 5.26136 5.44604 5.55281 5.57343 5.64749 5.65467 5.99992 6.14003 6.70328 6.75250 6.95448 7.21121 7.41485 8.89252 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.034906 B = 0.003824 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.969144 B = 7321.135826 C = 7694.069492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.260 3.740 3 H 0.012 0.988 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.264 1.264 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.588 5.588 13 C 0.075 3.925 14 C 0.532 3.468 15 O -0.594 6.594 16 C -0.095 4.095 17 C -0.103 4.103 18 C -0.055 4.055 19 C -0.121 4.121 20 C 0.539 3.461 21 O -0.541 6.541 22 O -0.501 6.501 23 C -0.052 4.052 24 C -0.091 4.091 25 H 0.022 0.978 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.265 0.735 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.436 0.564 35 H 0.170 0.830 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.302 -8.508 -18.677 20.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.158 3.842 3 H 0.029 0.971 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.188 1.188 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.317 5.317 13 C -0.067 4.067 14 C 0.321 3.679 15 O -0.477 6.477 16 C -0.098 4.098 17 C -0.121 4.121 18 C -0.073 4.073 19 C -0.122 4.122 20 C 0.384 3.616 21 O -0.433 6.433 22 O -0.315 6.315 23 C -0.070 4.070 24 C -0.110 4.110 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.173 0.827 33 H 0.175 0.825 34 H 0.298 0.702 35 H 0.187 0.813 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.331 -7.937 -18.057 20.004 hybrid contribution 0.342 -0.188 0.761 0.855 sum 3.673 -8.126 -17.296 19.459 Atomic orbital electron populations 1.21902 0.96803 1.00377 1.00166 1.18633 0.91807 0.92311 0.81403 0.97051 1.21594 1.31953 1.13101 0.91003 0.91937 1.25727 0.95051 0.95624 1.02017 1.70021 1.37279 1.23890 1.24422 0.85400 0.78212 0.78493 0.78862 1.18826 1.21251 1.19984 1.48189 1.48048 1.13424 1.22057 1.22192 1.01950 0.80330 1.02209 1.19039 0.78842 0.85572 0.84452 1.90713 1.57183 1.21006 1.78796 1.20238 1.01084 0.95320 0.93148 1.21728 0.97757 0.92633 0.99993 1.21337 0.94894 1.01162 0.89915 1.19345 1.06528 0.95012 0.91357 1.20748 0.72754 0.83729 0.84389 1.90887 1.47045 1.18044 1.87305 1.84509 1.80989 1.46817 1.19179 1.21550 0.93696 0.92986 0.98727 1.21290 0.98220 1.00582 0.90889 0.95933 0.93120 0.91181 0.92603 0.91406 0.90608 0.89131 0.82693 0.82473 0.70166 0.81258 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 8.96 71.98 0.64 -5.71 16 2 C 0.26 13.42 2.63 44.25 0.12 13.54 16 3 H 0.01 0.71 6.91 -2.39 -0.02 0.69 16 4 C -0.54 -28.92 8.37 25.60 0.21 -28.71 16 5 H 0.06 3.25 7.65 -2.91 -0.02 3.23 16 6 C 0.02 0.84 5.30 84.66 0.45 1.29 16 7 N -0.92 -52.42 11.32 21.45 0.24 -52.18 16 8 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 9 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 12 N -0.59 -24.71 2.75 -829.99 -2.28 -26.99 16 13 C 0.07 2.30 8.09 127.77 1.03 3.34 16 14 C 0.53 22.32 7.35 86.85 0.64 22.96 16 15 O -0.59 -30.59 16.24 -3.79 -0.06 -30.66 16 16 C -0.09 -2.89 5.24 -20.04 -0.11 -2.99 16 17 C -0.10 -2.49 7.55 22.49 0.17 -2.32 16 18 C -0.06 -1.13 9.58 22.50 0.22 -0.91 16 19 C -0.12 -2.40 5.88 -20.05 -0.12 -2.52 16 20 C 0.54 9.83 8.28 70.39 0.58 10.41 16 21 O -0.54 -12.80 17.12 20.02 0.34 -12.46 16 22 O -0.50 -5.65 12.67 -56.08 -0.71 -6.36 16 23 C -0.05 -0.99 9.60 22.50 0.22 -0.78 16 24 C -0.09 -2.33 9.61 22.49 0.22 -2.12 16 25 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.05 2.16 6.66 -2.39 -0.02 2.14 16 27 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.07 1.89 6.90 -2.39 -0.02 1.87 16 30 H 0.08 2.36 6.43 -2.39 -0.02 2.34 16 31 H 0.09 2.20 5.81 -2.39 -0.01 2.19 16 32 H 0.16 3.49 5.30 -2.91 -0.02 3.47 16 33 H 0.16 2.76 7.64 -2.91 -0.02 2.74 16 34 H 0.44 0.89 9.11 -74.06 -0.67 0.22 16 35 H 0.17 2.30 7.60 -2.91 -0.02 2.28 16 36 H 0.14 3.55 8.05 -2.91 -0.02 3.53 16 Total: -1.00 -73.39 307.97 4.29 -69.11 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.46 Total: 9.37 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 4.27 Total: 5.48 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -2.04 Total: -79.17 kcal Atomic # 8 Polarization: -49.05 SS G_CDS: -0.43 Total: -49.47 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -73.39 4.29 -69.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097785.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.537 kcal (2) G-P(sol) polarization free energy of solvation -73.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds