Wall clock time and date at job start Mon Mar 30 2020 01:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09012 * 109.47033 * 2 1 4 4 C 1.50698 * 109.47294 * 240.00323 * 2 1 3 5 5 H 1.08004 * 119.99228 * 239.99855 * 4 2 1 6 6 C 1.37874 * 120.00302 * 59.99643 * 4 2 1 7 7 N 1.31509 * 119.99955 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99989 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46859 * 90.00060 * 8 6 4 10 10 H 1.48504 * 109.47113 * 210.00066 * 8 6 4 11 11 H 1.48499 * 109.47135 * 330.00223 * 8 6 4 12 12 N 1.46497 * 109.47129 * 119.99778 * 2 1 3 13 13 C 1.46496 * 120.00041 * 60.00359 * 12 2 1 14 14 C 1.34783 * 120.00073 * 240.00063 * 12 2 1 15 15 O 1.21521 * 120.00136 * 354.55194 * 14 12 2 16 16 C 1.48049 * 119.99717 * 174.82222 * 14 12 2 17 17 C 1.39558 * 119.99595 * 335.46361 * 16 14 12 18 18 C 1.37812 * 120.00426 * 179.76100 * 17 16 14 19 19 C 1.39602 * 119.99122 * 0.51373 * 18 17 16 20 20 C 1.47937 * 120.00469 * 179.71535 * 19 18 17 21 21 O 1.21439 * 119.99757 * 180.02562 * 20 19 18 22 22 O 1.34686 * 119.99601 * 0.02637 * 20 19 18 23 23 C 1.39597 * 119.99542 * 359.74253 * 19 18 17 24 24 C 1.37822 * 119.99127 * 359.97438 * 23 19 18 25 25 H 1.09007 * 109.46863 * 59.99845 * 1 2 3 26 26 H 1.09000 * 109.47360 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47222 * 300.00396 * 1 2 3 28 28 H 0.97003 * 120.00153 * 180.02562 * 7 6 4 29 29 H 1.09006 * 109.47016 * 275.76749 * 13 12 2 30 30 H 1.09001 * 109.47051 * 35.76176 * 13 12 2 31 31 H 1.08995 * 109.47817 * 155.76822 * 13 12 2 32 32 H 1.07997 * 119.99773 * 0.02562 * 17 16 14 33 33 H 1.07995 * 120.00439 * 180.22938 * 18 17 16 34 34 H 0.96703 * 117.00092 * 179.97438 * 22 20 19 35 35 H 1.07995 * 120.00734 * 179.97438 * 23 19 18 36 36 H 1.07998 * 119.99728 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4280 14 6 2.7931 -0.0355 2.0834 15 8 3.1685 1.0952 1.8438 16 6 3.1918 -0.6957 3.3471 17 6 2.4102 -1.7253 3.8732 18 6 2.7838 -2.3433 5.0469 19 6 3.9385 -1.9321 5.7152 20 6 4.3364 -2.5911 6.9785 21 8 5.3406 -2.2330 7.5600 22 8 3.5849 -3.5882 7.4836 23 6 4.7173 -0.8986 5.1916 24 6 4.3464 -0.2848 4.0147 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7088 1.1614 -3.4844 29 1 0.6876 -2.1467 1.9088 30 1 1.6298 -2.6214 0.4752 31 1 2.4123 -2.5549 2.0725 32 1 1.5148 -2.0406 3.3582 33 1 2.1810 -3.1425 5.4521 34 1 3.8853 -3.9884 8.3111 35 1 5.6103 -0.5801 5.7087 36 1 4.9486 0.5150 3.6098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063097787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:09 Heat of formation + Delta-G solvation = -80.014046 kcal Electronic energy + Delta-G solvation = -20967.626682 eV Core-core repulsion = 17610.705577 eV Total energy + Delta-G solvation = -3356.921106 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.70925 -39.79844 -37.89604 -36.34803 -35.55497 -33.21676 -31.61865 -31.20304 -29.19216 -26.63169 -25.39605 -25.16837 -22.93167 -21.93339 -20.94575 -19.04027 -18.33788 -17.55930 -16.96041 -16.32108 -15.87321 -15.83660 -15.06739 -14.80191 -14.56964 -14.26437 -13.87271 -13.60334 -13.20524 -12.83476 -12.60218 -12.42988 -12.34176 -11.84565 -11.66597 -11.61260 -11.13634 -10.99189 -10.89577 -10.80937 -10.67430 -10.33839 -10.20727 -9.32996 -9.20070 -9.12573 -8.99678 -8.48312 -7.71770 -6.12203 -4.20518 0.31293 1.21813 2.19504 2.73160 3.22416 3.24152 3.31426 3.34166 3.70805 3.93390 4.35494 4.61112 4.73878 4.77795 5.01464 5.17445 5.19682 5.29028 5.48809 5.67109 5.81584 5.87949 5.99461 6.13854 6.18271 6.27409 6.29197 6.61813 6.68438 6.76084 6.97682 7.30297 7.44509 7.61212 7.64952 7.94100 8.12037 8.38600 8.73618 8.90276 9.45994 10.93233 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.034016 B = 0.003760 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.954818 B = 7444.568364 C = 7527.073391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.581 5.581 13 C 0.067 3.933 14 C 0.538 3.462 15 O -0.540 6.540 16 C -0.079 4.079 17 C -0.121 4.121 18 C -0.071 4.071 19 C -0.121 4.121 20 C 0.529 3.471 21 O -0.515 6.515 22 O -0.511 6.511 23 C -0.063 4.063 24 C -0.079 4.079 25 H 0.095 0.905 26 H 0.031 0.969 27 H 0.012 0.988 28 H 0.264 0.736 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.158 0.842 33 H 0.142 0.858 34 H 0.414 0.586 35 H 0.141 0.859 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 -9.178 15.676 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.083 0.917 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.311 5.311 13 C -0.076 4.076 14 C 0.324 3.676 15 O -0.419 6.419 16 C -0.082 4.082 17 C -0.139 4.139 18 C -0.090 4.090 19 C -0.122 4.122 20 C 0.373 3.627 21 O -0.405 6.405 22 O -0.323 6.323 23 C -0.082 4.082 24 C -0.098 4.098 25 H 0.113 0.887 26 H 0.050 0.950 27 H 0.031 0.969 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.175 0.825 33 H 0.159 0.841 34 H 0.272 0.728 35 H 0.159 0.841 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.849 -8.184 15.141 17.310 hybrid contribution 0.454 -0.852 -0.295 1.009 sum 2.303 -9.036 14.846 17.532 Atomic orbital electron populations 1.22097 0.97909 0.99552 1.00982 1.19019 0.90948 0.94569 0.79726 0.91713 1.21288 1.32015 1.13116 0.90210 0.92146 1.24886 0.94886 0.94936 0.98997 1.69871 1.36265 1.22495 1.23874 0.86478 0.79211 0.79297 0.82319 1.20580 1.21059 1.19896 1.48186 1.48073 1.11478 1.23355 1.22212 0.98790 0.83612 1.02966 1.18286 0.79819 0.86231 0.83253 1.90745 1.55006 1.18879 1.77302 1.20622 0.95708 0.95854 0.96045 1.22219 1.01193 0.94879 0.95566 1.21408 0.94837 0.98863 0.93855 1.19148 0.98941 0.99984 0.94167 1.21006 0.80143 0.76877 0.84635 1.90880 1.26027 1.63024 1.60535 1.84560 1.55100 1.48637 1.44015 1.21201 0.98836 0.93294 0.94834 1.21264 0.95778 0.99078 0.93695 0.88655 0.95024 0.96913 0.92601 0.93029 0.90064 0.91230 0.82510 0.84057 0.72780 0.84115 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 8.97 37.15 0.33 -3.05 16 2 C 0.26 6.38 2.63 -69.09 -0.18 6.20 16 3 H 0.07 1.87 6.91 -51.92 -0.36 1.51 16 4 C -0.53 -13.92 8.04 -34.44 -0.28 -14.19 16 5 H 0.06 1.57 7.24 -52.48 -0.38 1.19 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -24.62 11.32 55.43 0.63 -24.00 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.58 -11.95 2.75 -176.31 -0.49 -12.43 16 13 C 0.07 1.05 7.73 59.84 0.46 1.52 16 14 C 0.54 10.98 7.50 -12.23 -0.09 10.89 16 15 O -0.54 -13.14 15.92 5.35 0.09 -13.05 16 16 C -0.08 -1.23 5.50 -104.89 -0.58 -1.81 16 17 C -0.12 -1.49 7.52 -39.25 -0.29 -1.79 16 18 C -0.07 -0.76 9.60 -39.23 -0.38 -1.14 16 19 C -0.12 -1.40 5.88 -104.91 -0.62 -2.02 16 20 C 0.53 5.79 8.28 34.70 0.29 6.07 16 21 O -0.52 -6.95 17.12 -19.22 -0.33 -7.28 16 22 O -0.51 -3.89 12.67 -40.45 -0.51 -4.40 16 23 C -0.06 -0.78 9.58 -39.23 -0.38 -1.15 16 24 C -0.08 -1.12 9.57 -39.24 -0.38 -1.50 16 25 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 26 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 29 H 0.05 0.68 7.13 -51.93 -0.37 0.31 16 30 H 0.08 1.36 6.96 -51.93 -0.36 1.00 16 31 H 0.07 0.91 5.11 -51.93 -0.27 0.65 16 32 H 0.16 1.75 4.41 -52.49 -0.23 1.52 16 33 H 0.14 1.16 7.60 -52.49 -0.40 0.76 16 34 H 0.41 1.25 9.11 45.56 0.42 1.66 16 35 H 0.14 1.56 7.64 -52.49 -0.40 1.16 16 36 H 0.14 2.04 7.82 -52.49 -0.41 1.62 16 LS Contribution 306.87 15.07 4.62 4.62 Total: -1.00 -32.69 306.87 -6.22 -38.91 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -3.03 Total: 2.31 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -2.18 Total: -0.32 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.14 Total: -36.43 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.76 Total: -24.74 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.69 -6.22 -38.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.101 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds