Wall clock time and date at job start Mon Mar 30 2020 01:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09012 * 109.47033 * 2 1 4 4 C 1.50698 * 109.47294 * 240.00323 * 2 1 3 5 5 H 1.08004 * 119.99228 * 239.99855 * 4 2 1 6 6 C 1.37874 * 120.00302 * 59.99643 * 4 2 1 7 7 N 1.31509 * 119.99955 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99989 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46859 * 90.00060 * 8 6 4 10 10 H 1.48504 * 109.47113 * 210.00066 * 8 6 4 11 11 H 1.48499 * 109.47135 * 330.00223 * 8 6 4 12 12 N 1.46497 * 109.47129 * 119.99778 * 2 1 3 13 13 C 1.46496 * 120.00041 * 60.00359 * 12 2 1 14 14 C 1.34783 * 120.00073 * 240.00063 * 12 2 1 15 15 O 1.21521 * 120.00136 * 354.55194 * 14 12 2 16 16 C 1.48049 * 119.99717 * 174.82222 * 14 12 2 17 17 C 1.39558 * 119.99595 * 335.46361 * 16 14 12 18 18 C 1.37812 * 120.00426 * 179.76100 * 17 16 14 19 19 C 1.39602 * 119.99122 * 0.51373 * 18 17 16 20 20 C 1.47937 * 120.00469 * 179.71535 * 19 18 17 21 21 O 1.21439 * 119.99757 * 180.02562 * 20 19 18 22 22 O 1.34686 * 119.99601 * 0.02637 * 20 19 18 23 23 C 1.39597 * 119.99542 * 359.74253 * 19 18 17 24 24 C 1.37822 * 119.99127 * 359.97438 * 23 19 18 25 25 H 1.09007 * 109.46863 * 59.99845 * 1 2 3 26 26 H 1.09000 * 109.47360 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47222 * 300.00396 * 1 2 3 28 28 H 0.97003 * 120.00153 * 180.02562 * 7 6 4 29 29 H 1.09006 * 109.47016 * 275.76749 * 13 12 2 30 30 H 1.09001 * 109.47051 * 35.76176 * 13 12 2 31 31 H 1.08995 * 109.47817 * 155.76822 * 13 12 2 32 32 H 1.07997 * 119.99773 * 0.02562 * 17 16 14 33 33 H 1.07995 * 120.00439 * 180.22938 * 18 17 16 34 34 H 0.96703 * 117.00092 * 179.97438 * 22 20 19 35 35 H 1.07995 * 120.00734 * 179.97438 * 23 19 18 36 36 H 1.07998 * 119.99728 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0931 1.4280 14 6 2.7931 -0.0355 2.0834 15 8 3.1685 1.0952 1.8438 16 6 3.1918 -0.6957 3.3471 17 6 2.4102 -1.7253 3.8732 18 6 2.7838 -2.3433 5.0469 19 6 3.9385 -1.9321 5.7152 20 6 4.3364 -2.5911 6.9785 21 8 5.3406 -2.2330 7.5600 22 8 3.5849 -3.5882 7.4836 23 6 4.7173 -0.8986 5.1916 24 6 4.3464 -0.2848 4.0147 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 0.7088 1.1614 -3.4844 29 1 0.6876 -2.1467 1.9088 30 1 1.6298 -2.6214 0.4752 31 1 2.4123 -2.5549 2.0725 32 1 1.5148 -2.0406 3.3582 33 1 2.1810 -3.1425 5.4521 34 1 3.8853 -3.9884 8.3111 35 1 5.6103 -0.5801 5.7087 36 1 4.9486 0.5150 3.6098 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063097787.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:09 Heat of formation + Delta-G solvation = -102.087302 kcal Electronic energy + Delta-G solvation = -20968.583850 eV Core-core repulsion = 17610.705577 eV Total energy + Delta-G solvation = -3357.878274 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.72220 -41.00142 -39.10978 -37.28246 -37.10298 -35.00885 -32.94963 -32.25948 -30.85589 -27.99285 -27.31463 -26.40494 -24.03179 -23.16381 -22.19534 -20.56352 -19.15203 -18.61598 -18.47447 -18.00509 -17.41753 -16.68811 -16.54927 -16.25145 -15.77807 -15.56111 -15.14976 -14.67656 -14.51556 -14.32763 -14.01564 -13.71340 -13.59716 -13.41966 -12.99733 -12.78546 -12.72591 -12.66590 -12.57210 -12.21966 -12.13901 -11.93712 -11.74891 -11.20450 -10.82928 -10.52008 -10.20283 -10.04621 -9.38851 -8.15231 -6.31705 -0.71315 0.25600 1.21285 1.41834 1.43885 1.53376 1.94610 1.98570 2.22600 2.45326 2.74517 3.13367 3.50488 3.68658 3.86098 4.08333 4.17984 4.33137 4.37711 4.61117 4.66724 4.76712 4.90347 4.92669 5.02239 5.03333 5.07728 5.18456 5.24629 5.47780 5.54745 5.56589 5.65670 5.66345 6.02049 6.15153 6.71696 6.75382 6.95408 7.22775 7.41900 8.89254 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.034016 B = 0.003760 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.954818 B = 7444.568364 C = 7527.073391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.009 0.991 4 C -0.540 4.540 5 H 0.061 0.939 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.965 3.035 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.272 1.272 12 N -0.587 5.587 13 C 0.062 3.938 14 C 0.529 3.471 15 O -0.597 6.597 16 C -0.100 4.100 17 C -0.111 4.111 18 C -0.052 4.052 19 C -0.119 4.119 20 C 0.538 3.462 21 O -0.544 6.544 22 O -0.497 6.497 23 C -0.061 4.061 24 C -0.088 4.088 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.023 0.977 28 H 0.265 0.735 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.175 0.825 33 H 0.179 0.821 34 H 0.436 0.564 35 H 0.150 0.850 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 -12.426 17.365 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.027 0.973 4 C -0.578 4.578 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.190 1.190 10 H -0.213 1.213 11 H -0.197 1.197 12 N -0.316 5.316 13 C -0.080 4.080 14 C 0.319 3.681 15 O -0.480 6.480 16 C -0.103 4.103 17 C -0.129 4.129 18 C -0.069 4.069 19 C -0.120 4.120 20 C 0.384 3.616 21 O -0.437 6.437 22 O -0.311 6.311 23 C -0.080 4.080 24 C -0.107 4.107 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.192 0.808 33 H 0.196 0.804 34 H 0.299 0.701 35 H 0.167 0.833 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.279 -11.501 16.869 20.456 hybrid contribution 0.634 0.115 -0.686 0.941 sum 1.913 -11.386 16.183 19.879 Atomic orbital electron populations 1.21873 0.96522 1.00508 1.00162 1.18615 0.91940 0.92197 0.81408 0.97292 1.21558 1.32016 1.13144 0.91105 0.92049 1.25714 0.95043 0.95594 1.01984 1.70016 1.37275 1.23783 1.24480 0.85458 0.78840 0.78280 0.78444 1.19049 1.21265 1.19704 1.48151 1.48026 1.13344 1.22102 1.22547 1.01449 0.80518 1.03446 1.19055 0.78761 0.85739 0.84575 1.90701 1.57031 1.21470 1.78832 1.20257 0.97556 0.97956 0.94555 1.22331 1.00947 0.93517 0.96074 1.21713 0.94184 0.98619 0.92408 1.19366 0.98848 0.99301 0.94522 1.20756 0.79715 0.77081 0.84074 1.90887 1.27393 1.64092 1.61279 1.84495 1.54059 1.47274 1.45307 1.21232 0.99324 0.93431 0.93973 1.21183 0.95671 0.99292 0.94538 0.91348 0.92956 0.95822 0.92597 0.89780 0.91135 0.88288 0.80834 0.80401 0.70133 0.83271 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.16 8.97 71.98 0.65 -5.52 16 2 C 0.26 13.36 2.63 44.24 0.12 13.48 16 3 H 0.01 0.56 6.91 -2.38 -0.02 0.55 16 4 C -0.54 -28.99 8.04 25.60 0.21 -28.79 16 5 H 0.06 3.20 7.24 -2.91 -0.02 3.18 16 6 C 0.02 0.89 5.30 84.65 0.45 1.34 16 7 N -0.92 -52.35 11.32 21.45 0.24 -52.11 16 8 Si 0.96 42.59 29.54 68.60 2.03 44.62 16 9 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 12 N -0.59 -24.34 2.75 -829.99 -2.28 -26.63 16 13 C 0.06 1.79 7.73 127.77 0.99 2.77 16 14 C 0.53 22.31 7.50 86.85 0.65 22.96 16 15 O -0.60 -31.09 15.92 -3.78 -0.06 -31.15 16 16 C -0.10 -3.07 5.50 -20.04 -0.11 -3.18 16 17 C -0.11 -2.39 7.52 22.49 0.17 -2.22 16 18 C -0.05 -0.86 9.60 22.50 0.22 -0.65 16 19 C -0.12 -2.37 5.88 -20.05 -0.12 -2.49 16 20 C 0.54 9.86 8.28 70.39 0.58 10.44 16 21 O -0.54 -13.34 17.12 20.03 0.34 -12.99 16 22 O -0.50 -5.19 12.67 -55.96 -0.71 -5.90 16 23 C -0.06 -1.42 9.58 22.50 0.22 -1.20 16 24 C -0.09 -2.49 9.57 22.49 0.22 -2.28 16 25 H 0.07 3.58 6.07 -2.38 -0.01 3.56 16 26 H 0.05 2.16 7.67 -2.39 -0.02 2.14 16 27 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.08 1.91 7.13 -2.38 -0.02 1.89 16 30 H 0.07 2.22 6.96 -2.39 -0.02 2.20 16 31 H 0.10 2.28 5.11 -2.39 -0.01 2.27 16 32 H 0.17 3.13 4.41 -2.91 -0.01 3.12 16 33 H 0.18 1.77 7.60 -2.91 -0.02 1.75 16 34 H 0.44 0.63 9.11 -74.06 -0.67 -0.04 16 35 H 0.15 3.15 7.64 -2.91 -0.02 3.13 16 36 H 0.13 3.95 7.82 -2.91 -0.02 3.93 16 Total: -1.00 -74.96 306.87 4.24 -70.71 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.46 Total: 8.79 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 4.23 Total: 4.67 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -2.04 Total: -78.73 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -0.43 Total: -50.05 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -74.96 4.24 -70.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097787.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.375 kcal (2) G-P(sol) polarization free energy of solvation -74.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds