Wall clock time and date at job start Mon Mar 30 2020 01:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47136 * 2 1 4 4 C 1.50706 * 109.46784 * 120.00055 * 2 1 3 5 5 H 1.08000 * 119.99544 * 120.00142 * 4 2 1 6 6 C 1.37877 * 120.00063 * 299.99401 * 4 2 1 7 7 N 1.31512 * 119.99814 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 119.99919 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47375 * 89.99966 * 8 6 4 10 10 H 1.48504 * 109.47243 * 209.99882 * 8 6 4 11 11 H 1.48504 * 109.47515 * 329.99451 * 8 6 4 12 12 N 1.46501 * 109.47033 * 239.99839 * 2 1 3 13 13 C 1.46500 * 119.99797 * 299.99975 * 12 2 1 14 14 C 1.34776 * 120.00000 * 119.99848 * 12 2 1 15 15 O 1.21546 * 119.99810 * 4.48783 * 14 12 2 16 16 C 1.47855 * 119.99869 * 184.48048 * 14 12 2 17 17 C 1.39708 * 120.07685 * 319.96058 * 16 14 12 18 18 C 1.38061 * 120.15768 * 179.78519 * 17 16 14 19 19 C 1.38081 * 120.30525 * 0.47330 * 18 17 16 20 20 C 1.39721 * 120.13754 * 359.78070 * 19 18 17 21 21 C 1.47738 * 120.08249 * 180.02562 * 20 19 18 22 22 O 1.21472 * 120.00299 * 179.97438 * 21 20 19 23 23 O 1.34710 * 119.99564 * 359.97438 * 21 20 19 24 24 C 1.39289 * 120.06518 * 140.23541 * 16 14 12 25 25 H 1.08996 * 109.46871 * 59.99972 * 1 2 3 26 26 H 1.09000 * 109.47136 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46860 * 299.99936 * 1 2 3 28 28 H 0.96999 * 120.00064 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47480 * 271.90655 * 13 12 2 30 30 H 1.09002 * 109.46751 * 151.90351 * 13 12 2 31 31 H 1.09000 * 109.47219 * 31.90739 * 13 12 2 32 32 H 1.08002 * 119.91724 * 0.02562 * 17 16 14 33 33 H 1.08003 * 119.85132 * 180.21205 * 18 17 16 34 34 H 1.08000 * 119.93842 * 179.76449 * 19 18 17 35 35 H 0.96708 * 116.99914 * 180.02562 * 23 21 20 36 36 H 1.07988 * 120.15208 * 359.96004 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 2.1381 -0.8591 3.5566 8 14 0.6250 1.2791 2.6541 9 1 -0.8026 0.8729 2.6998 10 1 0.9762 1.9952 3.9068 11 1 0.8473 2.1766 1.4921 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0834 15 8 3.1542 1.1016 -1.8517 16 6 3.2041 -0.7006 -3.3384 17 6 3.5691 -2.0492 -3.3292 18 6 3.9488 -2.6729 -4.5009 19 6 3.9802 -1.9673 -5.6874 20 6 3.6227 -0.6167 -5.7101 21 6 3.6561 0.1369 -6.9803 22 8 3.3446 1.3109 -6.9984 23 8 4.0320 -0.4779 -8.1185 24 6 3.2336 0.0177 -4.5314 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.9041 -0.5274 4.4376 29 1 2.3973 -2.7379 -0.9428 30 1 1.6568 -2.2937 -2.4993 31 1 0.6757 -2.2916 -1.0142 32 1 3.5504 -2.6060 -2.4040 33 1 4.2268 -3.7165 -4.4887 34 1 4.2818 -2.4601 -6.5998 35 1 4.0386 0.0564 -8.9245 36 1 2.9561 1.0612 -4.5433 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063097795.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:11 Heat of formation + Delta-G solvation = -80.520904 kcal Electronic energy + Delta-G solvation = -21122.235392 eV Core-core repulsion = 17765.292308 eV Total energy + Delta-G solvation = -3356.943085 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.71250 -39.78724 -38.02759 -36.31689 -35.65958 -33.09898 -31.77500 -31.29134 -30.00488 -26.58276 -25.20719 -24.85914 -24.00289 -21.54816 -21.16489 -19.14657 -18.10773 -17.54414 -16.85384 -16.42880 -15.99122 -15.84304 -15.63134 -15.11246 -14.75703 -14.30742 -13.83600 -13.59235 -13.24153 -12.99635 -12.82733 -12.50831 -12.29903 -12.13122 -11.84081 -11.78669 -11.56917 -11.40292 -11.20286 -10.83976 -10.69878 -10.17672 -9.71807 -9.42938 -9.31036 -9.24518 -9.02894 -8.67048 -7.84021 -6.18179 -4.19332 0.43951 0.96553 2.27259 2.70867 3.14764 3.21377 3.35520 3.37731 3.60174 3.75992 4.32366 4.57167 4.66286 4.74993 4.96024 5.02843 5.15232 5.24362 5.47098 5.59582 5.69927 5.88194 6.00183 6.07732 6.11923 6.14846 6.19852 6.23772 6.27858 6.41907 6.54519 6.78880 7.04863 7.23985 7.56864 7.64395 8.06066 8.39507 8.72297 8.82776 9.42372 10.94434 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.033125 B = 0.004236 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.079602 B = 6607.991565 C = 7079.466494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.229 3.771 3 H 0.064 0.936 4 C -0.528 4.528 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.578 5.578 13 C 0.077 3.923 14 C 0.547 3.453 15 O -0.540 6.540 16 C -0.127 4.127 17 C -0.054 4.054 18 C -0.141 4.141 19 C -0.048 4.048 20 C -0.140 4.140 21 C 0.529 3.471 22 O -0.510 6.510 23 O -0.513 6.513 24 C -0.005 4.005 25 H 0.034 0.966 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.266 0.734 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.414 0.586 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.077 -5.855 -19.860 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.127 3.873 3 H 0.082 0.918 4 C -0.567 4.567 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.712 3.288 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.308 5.308 13 C -0.066 4.066 14 C 0.334 3.666 15 O -0.419 6.419 16 C -0.130 4.130 17 C -0.072 4.072 18 C -0.159 4.159 19 C -0.066 4.066 20 C -0.141 4.141 21 C 0.373 3.627 22 O -0.399 6.399 23 O -0.325 6.325 24 C -0.024 4.024 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.158 0.842 35 H 0.273 0.727 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.157 -5.176 -19.136 19.858 hybrid contribution -0.590 0.959 -0.211 1.146 sum 0.566 -4.217 -19.347 19.810 Atomic orbital electron populations 1.22471 0.98910 1.01199 0.99446 1.19358 0.90057 0.95267 0.82571 0.91786 1.21117 1.32870 1.14293 0.88384 0.90297 1.24853 0.95639 0.96560 0.95598 1.69865 1.45087 1.40167 0.97996 0.86923 0.80407 0.83831 0.77597 1.20349 1.22060 1.18775 1.47796 1.48553 1.11869 1.22568 1.21982 1.02092 0.82695 0.99861 1.18131 0.79475 0.86003 0.83032 1.90766 1.55322 1.18431 1.77343 1.20090 1.03944 0.94538 0.94428 1.22058 0.92243 0.93280 0.99643 1.21136 1.01925 1.00855 0.91961 1.21575 0.93696 0.92370 0.98967 1.18887 1.09889 0.94764 0.90609 1.20844 0.72916 0.84940 0.83959 1.90920 1.45207 1.17110 1.86695 1.84541 1.80945 1.47891 1.19170 1.21289 0.91480 1.00329 0.89328 0.94700 0.92409 0.92967 0.92373 0.92266 0.91872 0.90679 0.83582 0.84415 0.84240 0.72738 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.65 37.16 0.32 -3.11 16 2 C 0.23 5.45 2.23 -69.08 -0.15 5.30 16 3 H 0.06 1.70 5.97 -51.93 -0.31 1.39 16 4 C -0.53 -14.35 8.95 -34.44 -0.31 -14.66 16 5 H 0.08 2.29 7.84 -52.49 -0.41 1.87 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 8 Si 0.88 21.63 24.37 -169.99 -4.14 17.49 16 9 H -0.28 -6.46 6.87 56.52 0.39 -6.07 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 12 N -0.58 -11.64 2.75 -176.37 -0.49 -12.13 16 13 C 0.08 1.18 8.15 59.85 0.49 1.67 16 14 C 0.55 11.03 7.34 -12.33 -0.09 10.94 16 15 O -0.54 -13.06 16.26 5.32 0.09 -12.97 16 16 C -0.13 -1.96 5.21 -105.02 -0.55 -2.51 16 17 C -0.05 -0.65 7.46 -39.10 -0.29 -0.94 16 18 C -0.14 -1.30 10.02 -39.70 -0.40 -1.70 16 19 C -0.05 -0.45 9.61 -39.09 -0.38 -0.83 16 20 C -0.14 -1.70 5.87 -105.03 -0.62 -2.31 16 21 C 0.53 6.19 8.27 34.61 0.29 6.48 16 22 O -0.51 -7.64 17.13 -19.24 -0.33 -7.97 16 23 O -0.51 -3.98 12.67 -40.52 -0.51 -4.50 16 24 C -0.01 -0.08 9.18 -38.76 -0.36 -0.43 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 1.12 6.67 -51.93 -0.35 0.77 16 27 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.06 0.88 7.24 -51.93 -0.38 0.51 16 30 H 0.06 0.77 5.36 -51.93 -0.28 0.49 16 31 H 0.07 1.14 6.43 -51.93 -0.33 0.81 16 32 H 0.15 1.65 5.57 -52.49 -0.29 1.36 16 33 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 34 H 0.14 0.98 7.60 -52.49 -0.40 0.58 16 35 H 0.41 1.36 9.11 45.56 0.42 1.78 16 36 H 0.15 2.32 7.64 -52.49 -0.40 1.92 16 LS Contribution 301.22 15.07 4.54 4.54 Total: -1.00 -34.90 301.22 -5.14 -40.04 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -2.93 Total: 1.34 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -2.14 Total: -0.04 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.29 Total: -37.92 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.76 Total: -25.44 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.49 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.90 -5.14 -40.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097795.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.483 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds