Wall clock time and date at job start Mon Mar 30 2020 01:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47136 * 2 1 4 4 C 1.50706 * 109.46784 * 120.00055 * 2 1 3 5 5 H 1.08000 * 119.99544 * 120.00142 * 4 2 1 6 6 C 1.37877 * 120.00063 * 299.99401 * 4 2 1 7 7 N 1.31512 * 119.99814 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 119.99919 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47375 * 89.99966 * 8 6 4 10 10 H 1.48504 * 109.47243 * 209.99882 * 8 6 4 11 11 H 1.48504 * 109.47515 * 329.99451 * 8 6 4 12 12 N 1.46501 * 109.47033 * 239.99839 * 2 1 3 13 13 C 1.46500 * 119.99797 * 299.99975 * 12 2 1 14 14 C 1.34776 * 120.00000 * 119.99848 * 12 2 1 15 15 O 1.21546 * 119.99810 * 4.48783 * 14 12 2 16 16 C 1.47855 * 119.99869 * 184.48048 * 14 12 2 17 17 C 1.39708 * 120.07685 * 319.96058 * 16 14 12 18 18 C 1.38061 * 120.15768 * 179.78519 * 17 16 14 19 19 C 1.38081 * 120.30525 * 0.47330 * 18 17 16 20 20 C 1.39721 * 120.13754 * 359.78070 * 19 18 17 21 21 C 1.47738 * 120.08249 * 180.02562 * 20 19 18 22 22 O 1.21472 * 120.00299 * 179.97438 * 21 20 19 23 23 O 1.34710 * 119.99564 * 359.97438 * 21 20 19 24 24 C 1.39289 * 120.06518 * 140.23541 * 16 14 12 25 25 H 1.08996 * 109.46871 * 59.99972 * 1 2 3 26 26 H 1.09000 * 109.47136 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46860 * 299.99936 * 1 2 3 28 28 H 0.96999 * 120.00064 * 179.97438 * 7 6 4 29 29 H 1.08993 * 109.47480 * 271.90655 * 13 12 2 30 30 H 1.09002 * 109.46751 * 151.90351 * 13 12 2 31 31 H 1.09000 * 109.47219 * 31.90739 * 13 12 2 32 32 H 1.08002 * 119.91724 * 0.02562 * 17 16 14 33 33 H 1.08003 * 119.85132 * 180.21205 * 18 17 16 34 34 H 1.08000 * 119.93842 * 179.76449 * 19 18 17 35 35 H 0.96708 * 116.99914 * 180.02562 * 23 21 20 36 36 H 1.07988 * 120.15208 * 359.96004 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 2.1381 -0.8591 3.5566 8 14 0.6250 1.2791 2.6541 9 1 -0.8026 0.8729 2.6998 10 1 0.9762 1.9952 3.9068 11 1 0.8473 2.1766 1.4921 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0834 15 8 3.1542 1.1016 -1.8517 16 6 3.2041 -0.7006 -3.3384 17 6 3.5691 -2.0492 -3.3292 18 6 3.9488 -2.6729 -4.5009 19 6 3.9802 -1.9673 -5.6874 20 6 3.6227 -0.6167 -5.7101 21 6 3.6561 0.1369 -6.9803 22 8 3.3446 1.3109 -6.9984 23 8 4.0320 -0.4779 -8.1185 24 6 3.2336 0.0177 -4.5314 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.9041 -0.5274 4.4376 29 1 2.3973 -2.7379 -0.9428 30 1 1.6568 -2.2937 -2.4993 31 1 0.6757 -2.2916 -1.0142 32 1 3.5504 -2.6060 -2.4040 33 1 4.2268 -3.7165 -4.4887 34 1 4.2818 -2.4601 -6.5998 35 1 4.0386 0.0564 -8.9245 36 1 2.9561 1.0612 -4.5433 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063097795.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:11 Heat of formation + Delta-G solvation = -106.575507 kcal Electronic energy + Delta-G solvation = -21123.365205 eV Core-core repulsion = 17765.292308 eV Total energy + Delta-G solvation = -3358.072897 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.74814 -41.01166 -39.18424 -37.38338 -37.12546 -34.92862 -33.25823 -32.26581 -31.51832 -27.95405 -27.19187 -25.81612 -25.28506 -22.75545 -22.32025 -20.56415 -19.17107 -18.87095 -18.48195 -17.83690 -17.26156 -16.99232 -16.74153 -16.56819 -16.17360 -15.51054 -15.12878 -14.91086 -14.63071 -14.42215 -14.17668 -14.03183 -13.79795 -13.55081 -13.25281 -13.02534 -12.83691 -12.62426 -12.59518 -12.35878 -12.07626 -11.76322 -11.61472 -11.37980 -10.90519 -10.80932 -10.16243 -10.10865 -9.48971 -8.36573 -6.41007 -0.47978 -0.04691 1.24612 1.34904 1.35188 1.43040 1.74205 1.93468 2.21187 2.26379 2.68493 2.98714 3.44218 3.78512 3.89437 3.99887 4.11116 4.31123 4.33371 4.41128 4.53701 4.55953 4.67444 4.72649 4.81695 4.91040 5.03291 5.12003 5.19675 5.25219 5.30541 5.44466 5.52900 5.63525 5.70474 6.16914 6.57328 6.62824 6.92487 7.12375 7.27785 8.79150 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.033125 B = 0.004236 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.079602 B = 6607.991565 C = 7079.466494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.229 3.771 3 H 0.029 0.971 4 C -0.525 4.525 5 H 0.050 0.950 6 C 0.026 3.974 7 N -0.936 5.936 8 Si 0.937 3.063 9 H -0.251 1.251 10 H -0.295 1.295 11 H -0.266 1.266 12 N -0.585 5.585 13 C 0.073 3.927 14 C 0.539 3.461 15 O -0.597 6.597 16 C -0.147 4.147 17 C -0.053 4.053 18 C -0.119 4.119 19 C -0.023 4.023 20 C -0.147 4.147 21 C 0.537 3.463 22 O -0.554 6.554 23 O -0.494 6.494 24 C -0.022 4.022 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.044 0.956 28 H 0.269 0.731 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.078 0.922 32 H 0.153 0.847 33 H 0.184 0.816 34 H 0.178 0.822 35 H 0.436 0.564 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.709 -8.263 -22.612 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.126 3.874 3 H 0.047 0.953 4 C -0.564 4.564 5 H 0.069 0.931 6 C -0.173 4.173 7 N -0.576 5.576 8 Si 0.764 3.236 9 H -0.176 1.176 10 H -0.223 1.223 11 H -0.191 1.191 12 N -0.313 5.313 13 C -0.068 4.068 14 C 0.329 3.671 15 O -0.480 6.480 16 C -0.150 4.150 17 C -0.071 4.071 18 C -0.137 4.137 19 C -0.041 4.041 20 C -0.148 4.148 21 C 0.382 3.618 22 O -0.446 6.446 23 O -0.308 6.308 24 C -0.041 4.041 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.096 0.904 32 H 0.171 0.829 33 H 0.202 0.798 34 H 0.196 0.804 35 H 0.298 0.702 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.775 -7.641 -21.941 23.246 hybrid contribution -0.343 1.593 0.495 1.703 sum 0.432 -6.048 -21.446 22.287 Atomic orbital electron populations 1.22327 0.96316 1.02633 0.99974 1.19038 0.91993 0.93411 0.82944 0.95325 1.21314 1.31894 1.13254 0.89927 0.93144 1.25585 0.97085 0.99265 0.95357 1.69982 1.46959 1.42034 0.98580 0.86037 0.80133 0.80348 0.77032 1.17618 1.22273 1.19130 1.47842 1.48428 1.13637 1.21426 1.22256 1.02225 0.79883 1.02464 1.18933 0.78386 0.85501 0.84317 1.90715 1.57417 1.21075 1.78767 1.19669 1.07176 0.96142 0.92064 1.22184 0.91982 0.91534 1.01399 1.21600 0.99259 1.02591 0.90214 1.22026 0.90787 0.90727 1.00591 1.18970 1.09989 0.96097 0.89794 1.20780 0.72022 0.84185 0.84770 1.90915 1.47296 1.19007 1.87389 1.84473 1.79734 1.47550 1.19066 1.21081 0.93170 0.99305 0.90583 0.92716 0.90526 0.93784 0.92194 0.91885 0.88167 0.90351 0.82912 0.79839 0.80450 0.70202 0.86669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.39 8.65 71.98 0.62 -5.77 16 2 C 0.23 11.15 2.23 44.25 0.10 11.25 16 3 H 0.03 1.60 5.97 -2.39 -0.01 1.59 16 4 C -0.53 -29.34 8.95 25.60 0.23 -29.11 16 5 H 0.05 3.03 7.84 -2.91 -0.02 3.01 16 6 C 0.03 1.50 5.45 84.65 0.46 1.97 16 7 N -0.94 -56.98 13.96 21.45 0.30 -56.68 16 8 Si 0.94 45.20 24.37 68.60 1.67 46.87 16 9 H -0.25 -11.01 6.87 99.48 0.68 -10.32 16 10 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 11 H -0.27 -12.89 6.53 99.48 0.65 -12.24 16 12 N -0.58 -23.87 2.75 -830.19 -2.29 -26.16 16 13 C 0.07 2.15 8.15 127.77 1.04 3.19 16 14 C 0.54 22.57 7.34 86.79 0.64 23.21 16 15 O -0.60 -30.87 16.26 -3.86 -0.06 -30.93 16 16 C -0.15 -4.53 5.21 -20.12 -0.10 -4.63 16 17 C -0.05 -1.12 7.46 22.58 0.17 -0.95 16 18 C -0.12 -1.56 10.02 22.19 0.22 -1.34 16 19 C -0.02 -0.33 9.61 22.59 0.22 -0.11 16 20 C -0.15 -3.25 5.87 -20.13 -0.12 -3.36 16 21 C 0.54 11.59 8.27 70.33 0.58 12.17 16 22 O -0.55 -16.62 17.13 19.93 0.34 -16.28 16 23 O -0.49 -5.83 12.67 -56.20 -0.71 -6.55 16 24 C -0.02 -0.65 9.18 22.80 0.21 -0.45 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.08 2.84 6.67 -2.39 -0.02 2.82 16 27 H 0.04 1.88 3.27 -2.38 -0.01 1.87 16 28 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 29 H 0.06 1.81 7.24 -2.39 -0.02 1.79 16 30 H 0.10 2.19 5.36 -2.39 -0.01 2.18 16 31 H 0.08 2.25 6.43 -2.39 -0.02 2.23 16 32 H 0.15 3.04 5.57 -2.91 -0.02 3.02 16 33 H 0.18 0.88 8.06 -2.91 -0.02 0.86 16 34 H 0.18 1.24 7.60 -2.91 -0.02 1.21 16 35 H 0.44 1.35 9.11 -74.05 -0.67 0.68 16 36 H 0.12 4.03 7.64 -2.92 -0.02 4.01 16 Total: -1.00 -81.76 301.22 3.90 -77.86 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.38 Total: 5.79 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 4.27 Total: 6.07 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -1.99 Total: -82.84 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -0.43 Total: -53.75 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.67 Total: 46.87 kcal Total: -81.76 3.90 -77.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063097795.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.717 kcal (2) G-P(sol) polarization free energy of solvation -81.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds