Wall clock time and date at job start Mon Mar 30 2020 01:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47160 * 2 1 4 4 C 1.46493 * 119.99751 * 84.99881 * 3 2 1 5 5 C 1.50706 * 109.47128 * 85.00265 * 4 3 2 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47057 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 300.00068 * 9 7 5 12 12 H 1.48504 * 109.47102 * 60.00417 * 9 7 5 13 13 S 1.65596 * 119.99966 * 265.00396 * 3 2 1 14 14 O 1.42095 * 104.28078 * 26.06959 * 13 3 2 15 15 O 1.42105 * 104.27808 * 153.92976 * 13 3 2 16 16 C 1.81398 * 104.45114 * 269.99730 * 13 3 2 17 17 C 1.52990 * 109.47619 * 180.02562 * 16 13 3 18 18 H 1.09002 * 109.82264 * 305.57017 * 17 16 13 19 19 C 1.54379 * 109.83720 * 184.58960 * 17 16 13 20 20 C 1.55306 * 102.25423 * 219.13077 * 19 17 16 21 21 C 1.54945 * 100.94231 * 34.13038 * 20 19 17 22 22 O 1.43235 * 109.83356 * 66.45236 * 17 16 13 23 23 H 1.08997 * 109.47208 * 299.99710 * 1 2 3 24 24 H 1.08996 * 109.47539 * 59.99873 * 1 2 3 25 25 H 1.09000 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47135 * 240.00212 * 2 1 3 27 27 H 1.08996 * 109.47539 * 120.00127 * 2 1 3 28 28 H 1.09001 * 109.47786 * 325.00538 * 4 3 2 29 29 H 1.09006 * 109.47401 * 205.00123 * 4 3 2 30 30 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 31 31 H 1.09004 * 109.46933 * 300.00461 * 16 13 3 32 32 H 1.08997 * 109.46838 * 59.99777 * 16 13 3 33 33 H 1.09009 * 110.84192 * 337.31936 * 19 17 16 34 34 H 1.08994 * 110.85352 * 100.93279 * 19 17 16 35 35 H 1.08999 * 111.12105 * 276.20446 * 20 19 17 36 36 H 1.09007 * 111.16012 * 152.06814 * 20 19 17 37 37 H 1.09001 * 110.30485 * 204.64310 * 21 20 19 38 38 H 1.08997 * 110.39190 * 82.51466 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1086 1.2639 5 6 3.4948 1.7888 1.8823 6 1 4.1721 1.1110 1.3839 7 6 3.8529 2.3613 3.0843 8 7 3.0280 3.1861 3.6915 9 14 5.5094 1.9642 3.8512 10 1 5.6518 2.7026 5.1317 11 1 5.5986 0.5044 4.1084 12 1 6.5948 2.3705 2.9227 13 16 2.4121 2.1202 -1.4287 14 8 1.6208 1.4497 -2.3999 15 8 2.2333 3.5056 -1.1676 16 6 4.1696 1.7390 -1.6662 17 6 4.6580 2.3751 -2.9690 18 1 4.0238 2.0566 -3.7964 19 6 6.1206 1.9609 -3.2382 20 6 6.7366 3.2716 -3.7991 21 6 5.9540 4.3349 -2.9880 22 8 4.6265 3.8026 -2.8545 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.3618 1.8096 1.9453 29 1 2.0921 3.1803 1.0756 30 1 2.1677 3.3920 3.2935 31 1 4.7441 2.1376 -0.8299 32 1 4.3033 0.6584 -1.7166 33 1 6.6160 1.6640 -2.3137 34 1 6.1677 1.1623 -3.9785 35 1 6.5428 3.3710 -4.8671 36 1 7.8049 3.3255 -3.5895 37 1 5.9296 5.2809 -3.5291 38 1 6.4069 4.4728 -2.0062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063155889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:51 Heat of formation + Delta-G solvation = -127.844396 kcal Electronic energy + Delta-G solvation = -21057.647511 eV Core-core repulsion = 17834.096277 eV Total energy + Delta-G solvation = -3223.551234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.49852 -36.51111 -36.15297 -35.21588 -32.93647 -32.40870 -31.66861 -29.85796 -26.44152 -26.11177 -23.12924 -22.00934 -21.88829 -21.17465 -18.23018 -17.25130 -17.08846 -16.55816 -16.04157 -15.93259 -15.41304 -14.44055 -14.24842 -13.78452 -13.59769 -13.44188 -13.26535 -12.91804 -12.45732 -12.20970 -11.97083 -11.90248 -11.83897 -11.60561 -11.41946 -11.27153 -11.26564 -11.02077 -10.97791 -10.95535 -10.51789 -10.30761 -10.18763 -9.99707 -9.63107 -9.32395 -8.45206 -7.89893 -6.45338 -4.20190 0.92703 3.34259 3.36778 3.38179 3.56270 3.70652 4.28185 4.37939 4.45764 4.66798 4.72365 4.81062 4.98918 5.13542 5.24191 5.28428 5.37089 5.46874 5.55107 5.63083 5.66321 5.73758 5.76784 5.80344 5.97807 6.06867 6.12928 6.27083 6.59011 6.66567 6.91849 7.08496 7.26320 7.51979 7.95921 8.33777 8.72483 9.52149 10.92214 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.008244 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.855244 B = 3395.599610 C = 4741.716567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.129 3.871 3 N -0.984 5.984 4 C 0.234 3.766 5 C -0.625 4.625 6 H 0.054 0.946 7 C 0.023 3.977 8 N -0.904 5.904 9 Si 1.067 2.933 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.288 1.288 13 S 2.617 3.383 14 O -0.979 6.979 15 O -0.943 6.943 16 C -0.649 4.649 17 C 0.090 3.910 18 H 0.090 0.910 19 C -0.143 4.143 20 C -0.158 4.158 21 C 0.048 3.952 22 O -0.370 6.370 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.029 0.971 29 H 0.045 0.955 30 H 0.271 0.729 31 H 0.147 0.853 32 H 0.132 0.868 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.691 -4.635 -12.592 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.002 3.998 3 N -0.822 5.822 4 C 0.111 3.889 5 C -0.664 4.664 6 H 0.073 0.927 7 C -0.183 4.183 8 N -0.539 5.539 9 Si 0.895 3.105 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.214 1.214 13 S 2.709 3.291 14 O -0.969 6.969 15 O -0.933 6.933 16 C -0.776 4.776 17 C 0.031 3.969 18 H 0.108 0.892 19 C -0.182 4.182 20 C -0.195 4.195 21 C -0.028 4.028 22 O -0.289 6.289 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.082 0.918 31 H 0.166 0.834 32 H 0.151 0.849 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.879 -3.694 -11.749 13.647 hybrid contribution -0.050 -0.935 -0.964 1.344 sum 5.829 -4.629 -12.713 14.732 Atomic orbital electron populations 1.22192 0.96802 1.01362 1.02475 1.20999 0.93929 0.82825 1.02004 1.57342 1.78458 1.22942 1.23412 1.19260 0.97421 0.92323 0.79901 1.22379 1.02882 1.31668 1.09509 0.92738 1.25775 1.04380 0.93746 0.94402 1.70773 1.09958 1.32437 1.40705 0.83580 0.74431 0.76029 0.76505 1.20563 1.21398 1.21439 1.04684 0.76795 0.74464 0.73199 1.93511 1.65674 1.76526 1.61216 1.93564 1.84661 1.31409 1.83679 1.31122 1.29877 1.10034 1.06584 1.22337 0.98342 0.82055 0.94158 0.89180 1.23157 0.94094 0.98419 1.02510 1.23305 1.00874 0.94647 1.00705 1.23440 0.82547 0.97108 0.99731 1.88578 1.28082 1.18231 1.93988 0.92321 0.92318 0.92327 0.91820 0.90306 0.95350 0.93744 0.91797 0.83449 0.84931 0.89622 0.89685 0.90274 0.89680 0.89384 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 10.24 37.16 0.38 -2.40 16 2 C 0.13 2.29 5.98 -4.04 -0.02 2.27 16 3 N -0.98 -20.80 2.70 -115.66 -0.31 -21.11 16 4 C 0.23 5.87 4.72 -5.19 -0.02 5.85 16 5 C -0.63 -16.60 9.38 -34.44 -0.32 -16.92 16 6 H 0.05 1.38 7.81 -52.48 -0.41 0.97 16 7 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 8 N -0.90 -26.77 13.65 55.43 0.76 -26.01 16 9 Si 1.07 24.18 29.90 -169.99 -5.08 19.10 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 12 H -0.29 -6.20 7.11 56.52 0.40 -5.79 16 13 S 2.62 53.43 5.25 -107.50 -0.56 52.87 16 14 O -0.98 -20.24 16.75 -57.54 -0.96 -21.20 16 15 O -0.94 -23.01 16.14 -58.97 -0.95 -23.96 16 16 C -0.65 -10.68 5.73 37.15 0.21 -10.47 16 17 C 0.09 1.34 3.51 -26.01 -0.09 1.25 16 18 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 19 C -0.14 -1.58 6.54 -24.79 -0.16 -1.74 16 20 C -0.16 -1.54 7.16 -24.48 -0.18 -1.72 16 21 C 0.05 0.61 7.78 38.18 0.30 0.91 16 22 O -0.37 -6.30 10.47 -35.29 -0.37 -6.67 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.06 1.01 7.90 -51.93 -0.41 0.60 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.98 7.61 -51.93 -0.40 0.58 16 27 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 28 H 0.03 0.73 7.98 -51.93 -0.41 0.32 16 29 H 0.04 1.22 6.68 -51.93 -0.35 0.88 16 30 H 0.27 8.04 7.22 -40.82 -0.29 7.75 16 31 H 0.15 2.63 8.14 -51.92 -0.42 2.21 16 32 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 33 H 0.09 0.94 7.85 -51.92 -0.41 0.53 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -33.76 325.25 -8.72 -42.48 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.12 Total: 2.07 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -0.01 Total: -22.45 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.44 Total: -47.12 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -2.28 Total: -51.84 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.08 Total: 19.10 kcal Atomic # 16 Polarization: 53.43 SS G_CDS: -0.56 Total: 52.87 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.76 -8.72 -42.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063155889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.365 kcal (2) G-P(sol) polarization free energy of solvation -33.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds