Wall clock time and date at job start Mon Mar 30 2020 01:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47160 * 2 1 4 4 C 1.46493 * 119.99751 * 84.99881 * 3 2 1 5 5 C 1.50706 * 109.47128 * 85.00265 * 4 3 2 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47057 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 300.00068 * 9 7 5 12 12 H 1.48504 * 109.47102 * 60.00417 * 9 7 5 13 13 S 1.65596 * 119.99966 * 265.00396 * 3 2 1 14 14 O 1.42095 * 104.28078 * 26.06959 * 13 3 2 15 15 O 1.42105 * 104.27808 * 153.92976 * 13 3 2 16 16 C 1.81398 * 104.45114 * 269.99730 * 13 3 2 17 17 C 1.52990 * 109.47619 * 180.02562 * 16 13 3 18 18 H 1.09002 * 109.82264 * 305.57017 * 17 16 13 19 19 C 1.54379 * 109.83720 * 184.58960 * 17 16 13 20 20 C 1.55306 * 102.25423 * 219.13077 * 19 17 16 21 21 C 1.54945 * 100.94231 * 34.13038 * 20 19 17 22 22 O 1.43235 * 109.83356 * 66.45236 * 17 16 13 23 23 H 1.08997 * 109.47208 * 299.99710 * 1 2 3 24 24 H 1.08996 * 109.47539 * 59.99873 * 1 2 3 25 25 H 1.09000 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47135 * 240.00212 * 2 1 3 27 27 H 1.08996 * 109.47539 * 120.00127 * 2 1 3 28 28 H 1.09001 * 109.47786 * 325.00538 * 4 3 2 29 29 H 1.09006 * 109.47401 * 205.00123 * 4 3 2 30 30 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 31 31 H 1.09004 * 109.46933 * 300.00461 * 16 13 3 32 32 H 1.08997 * 109.46838 * 59.99777 * 16 13 3 33 33 H 1.09009 * 110.84192 * 337.31936 * 19 17 16 34 34 H 1.08994 * 110.85352 * 100.93279 * 19 17 16 35 35 H 1.08999 * 111.12105 * 276.20446 * 20 19 17 36 36 H 1.09007 * 111.16012 * 152.06814 * 20 19 17 37 37 H 1.09001 * 110.30485 * 204.64310 * 21 20 19 38 38 H 1.08997 * 110.39190 * 82.51466 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1086 1.2639 5 6 3.4948 1.7888 1.8823 6 1 4.1721 1.1110 1.3839 7 6 3.8529 2.3613 3.0843 8 7 3.0280 3.1861 3.6915 9 14 5.5094 1.9642 3.8512 10 1 5.6518 2.7026 5.1317 11 1 5.5986 0.5044 4.1084 12 1 6.5948 2.3705 2.9227 13 16 2.4121 2.1202 -1.4287 14 8 1.6208 1.4497 -2.3999 15 8 2.2333 3.5056 -1.1676 16 6 4.1696 1.7390 -1.6662 17 6 4.6580 2.3751 -2.9690 18 1 4.0238 2.0566 -3.7964 19 6 6.1206 1.9609 -3.2382 20 6 6.7366 3.2716 -3.7991 21 6 5.9540 4.3349 -2.9880 22 8 4.6265 3.8026 -2.8545 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.3618 1.8096 1.9453 29 1 2.0921 3.1803 1.0756 30 1 2.1677 3.3920 3.2935 31 1 4.7441 2.1376 -0.8299 32 1 4.3033 0.6584 -1.7166 33 1 6.6160 1.6640 -2.3137 34 1 6.1677 1.1623 -3.9785 35 1 6.5428 3.3710 -4.8671 36 1 7.8049 3.3255 -3.5895 37 1 5.9296 5.2809 -3.5291 38 1 6.4069 4.4728 -2.0062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063155889.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:51 Heat of formation + Delta-G solvation = -152.590237 kcal Electronic energy + Delta-G solvation = -21058.720571 eV Core-core repulsion = 17834.096277 eV Total energy + Delta-G solvation = -3224.624294 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54625 -38.19046 -37.87197 -36.93286 -34.93641 -33.50790 -32.69765 -31.47215 -28.11130 -27.48266 -25.03006 -23.45840 -22.86100 -22.31766 -19.89996 -19.06405 -18.38380 -18.15145 -17.57937 -17.02707 -16.99027 -15.97499 -15.62188 -15.50861 -15.02117 -14.64897 -14.60428 -14.30480 -14.04334 -13.76155 -13.42537 -13.25994 -13.15189 -13.08317 -12.98967 -12.79330 -12.74049 -12.61384 -12.27005 -12.13687 -11.94588 -11.80560 -11.77684 -11.50886 -11.14437 -10.74865 -10.55614 -9.69932 -8.64134 -6.40976 -0.65765 1.54189 1.62387 1.75121 1.80875 2.57999 2.68983 2.85584 3.16305 3.24412 3.35504 3.58603 3.83806 3.88549 3.96146 4.10979 4.28099 4.33990 4.40356 4.41629 4.58431 4.62679 4.77965 4.87257 4.90031 4.90886 4.94183 4.97771 5.01305 5.22328 5.31104 5.38978 5.77423 5.85859 5.89252 6.22808 6.49697 7.41634 8.71800 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.008244 C = 0.005904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.855244 B = 3395.599610 C = 4741.716567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.991 5.991 4 C 0.247 3.753 5 C -0.623 4.623 6 H 0.071 0.929 7 C -0.033 4.033 8 N -0.935 5.935 9 Si 1.114 2.886 10 H -0.289 1.289 11 H -0.263 1.263 12 H -0.267 1.267 13 S 2.608 3.392 14 O -0.986 6.986 15 O -0.996 6.996 16 C -0.623 4.623 17 C 0.075 3.925 18 H 0.102 0.898 19 C -0.138 4.138 20 C -0.146 4.146 21 C 0.031 3.969 22 O -0.410 6.410 23 H 0.041 0.959 24 H 0.046 0.954 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.013 0.987 29 H 0.009 0.991 30 H 0.255 0.745 31 H 0.135 0.865 32 H 0.172 0.828 33 H 0.087 0.913 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.368 -6.995 -14.116 17.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.828 5.828 4 C 0.122 3.878 5 C -0.662 4.662 6 H 0.089 0.911 7 C -0.231 4.231 8 N -0.572 5.572 9 Si 0.934 3.066 10 H -0.215 1.215 11 H -0.188 1.188 12 H -0.192 1.192 13 S 2.706 3.294 14 O -0.977 6.977 15 O -0.987 6.987 16 C -0.756 4.756 17 C 0.015 3.985 18 H 0.119 0.881 19 C -0.176 4.176 20 C -0.183 4.183 21 C -0.045 4.045 22 O -0.331 6.331 23 H 0.060 0.940 24 H 0.065 0.935 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.031 0.969 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.154 0.846 32 H 0.190 0.810 33 H 0.106 0.894 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.487 -6.072 -13.297 16.903 hybrid contribution -0.912 -0.200 -0.585 1.101 sum 7.576 -6.272 -13.882 17.013 Atomic orbital electron populations 1.22195 0.96159 1.03307 1.01073 1.21329 0.94699 0.81176 1.03581 1.57246 1.79715 1.24050 1.21835 1.18812 0.96743 0.90866 0.81353 1.22716 1.03254 1.31004 1.09260 0.91105 1.27354 1.07250 0.93034 0.95479 1.70905 1.10047 1.34683 1.41576 0.83003 0.70764 0.77137 0.75671 1.21464 1.18778 1.19171 1.04715 0.78752 0.73271 0.72707 1.93488 1.67315 1.76041 1.60813 1.93499 1.86388 1.34550 1.84236 1.30899 1.24283 1.12769 1.07604 1.22699 1.01359 0.81342 0.93068 0.88051 1.23213 0.90926 0.99831 1.03663 1.23311 1.01611 0.92384 1.00983 1.23734 0.81596 0.98879 1.00285 1.88559 1.30674 1.19685 1.94134 0.93952 0.93485 0.88705 0.88727 0.90068 0.96947 0.97256 0.93530 0.84619 0.81033 0.89412 0.86602 0.88674 0.87288 0.88151 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.43 10.24 71.98 0.74 -4.70 16 2 C 0.12 4.02 5.98 86.38 0.52 4.54 16 3 N -0.99 -42.22 2.70 -519.83 -1.40 -43.63 16 4 C 0.25 12.87 4.72 85.64 0.40 13.27 16 5 C -0.62 -33.17 9.38 25.60 0.24 -32.93 16 6 H 0.07 3.46 7.81 -2.91 -0.02 3.44 16 7 C -0.03 -1.80 5.46 84.65 0.46 -1.34 16 8 N -0.94 -57.09 13.65 21.45 0.29 -56.80 16 9 Si 1.11 47.57 29.90 68.60 2.05 49.62 16 10 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 12 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 13 S 2.61 107.07 5.25 -56.49 -0.30 106.78 16 14 O -0.99 -40.22 16.75 -127.65 -2.14 -42.36 16 15 O -1.00 -51.04 16.14 -126.28 -2.04 -53.08 16 16 C -0.62 -19.29 5.73 71.98 0.41 -18.87 16 17 C 0.07 2.04 3.51 31.06 0.11 2.15 16 18 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 19 C -0.14 -2.47 6.54 31.85 0.21 -2.26 16 20 C -0.15 -2.31 7.16 32.05 0.23 -2.08 16 21 C 0.03 0.74 7.78 72.65 0.56 1.31 16 22 O -0.41 -13.81 10.47 -148.92 -1.56 -15.37 16 23 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.05 1.60 7.90 -2.39 -0.02 1.59 16 25 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.09 2.64 7.61 -2.38 -0.02 2.63 16 27 H 0.08 2.74 8.11 -2.39 -0.02 2.72 16 28 H 0.01 0.68 7.98 -2.39 -0.02 0.66 16 29 H 0.01 0.56 6.68 -2.38 -0.02 0.54 16 30 H 0.26 15.97 7.22 -92.71 -0.67 15.30 16 31 H 0.14 4.65 8.14 -2.39 -0.02 4.63 16 32 H 0.17 3.89 8.14 -2.39 -0.02 3.87 16 33 H 0.09 1.55 7.85 -2.38 -0.02 1.54 16 34 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -76.36 325.25 -0.08 -76.45 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.12 Total: 19.31 kcal Atomic # 6 Polarization: -44.80 SS G_CDS: 3.88 Total: -40.92 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -1.11 Total: -100.43 kcal Atomic # 8 Polarization: -105.08 SS G_CDS: -5.73 Total: -110.81 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 2.05 Total: 49.62 kcal Atomic # 16 Polarization: 107.07 SS G_CDS: -0.30 Total: 106.78 kcal Total: -76.36 -0.08 -76.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063155889.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.145 kcal (2) G-P(sol) polarization free energy of solvation -76.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds