Wall clock time and date at job start Mon Mar 30 2020 01:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 5 5 H 1.07999 * 119.99515 * 240.00498 * 4 2 1 6 6 C 1.37870 * 120.00176 * 59.99965 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47216 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47389 * 119.99848 * 8 6 4 11 11 H 1.48501 * 109.47057 * 239.99829 * 8 6 4 12 12 N 1.46496 * 109.47194 * 120.00051 * 2 1 3 13 13 C 1.46494 * 120.00253 * 59.99848 * 12 2 1 14 14 S 1.65603 * 119.99847 * 240.00018 * 12 2 1 15 15 O 1.42102 * 104.27393 * 206.07043 * 14 12 2 16 16 O 1.42095 * 104.27873 * 333.92514 * 14 12 2 17 17 C 1.81398 * 104.44976 * 89.99765 * 14 12 2 18 18 C 1.53004 * 109.46827 * 179.97438 * 17 14 12 19 19 H 1.08988 * 109.83064 * 305.56792 * 18 17 14 20 20 C 1.54385 * 109.82837 * 184.58391 * 18 17 14 21 21 C 1.55306 * 102.25654 * 219.13212 * 20 18 17 22 22 C 1.54949 * 100.93913 * 34.13424 * 21 20 18 23 23 O 1.43237 * 109.82885 * 66.46091 * 18 17 14 24 24 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 25 25 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 26 26 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 27 27 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47438 * 90.00207 * 13 12 2 29 29 H 1.09000 * 109.47621 * 210.00437 * 13 12 2 30 30 H 1.09004 * 109.47284 * 329.99873 * 13 12 2 31 31 H 1.08996 * 109.47248 * 300.00013 * 17 14 12 32 32 H 1.09000 * 109.46999 * 60.00232 * 17 14 12 33 33 H 1.09001 * 110.84946 * 337.33002 * 20 18 17 34 34 H 1.09005 * 110.84158 * 100.94304 * 20 18 17 35 35 H 1.08997 * 111.12228 * 276.22083 * 21 20 18 36 36 H 1.08996 * 111.15946 * 152.06941 * 21 20 18 37 37 H 1.08998 * 110.30912 * 204.63655 * 22 21 20 38 38 H 1.09000 * 110.38848 * 82.51423 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2870 -3.6038 10 1 1.1661 -1.5868 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0931 1.4280 14 16 2.9704 0.1142 2.2862 15 8 3.7315 -0.9106 2.9104 16 8 3.6005 1.1302 1.5181 17 6 1.7964 0.8414 3.4624 18 6 2.5634 1.6202 4.5329 19 1 3.3077 0.9741 4.9982 20 6 1.5817 2.1460 5.6022 21 6 2.1530 3.5573 5.9088 22 6 2.6901 3.9664 4.5141 23 8 3.2067 2.7548 3.9409 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7089 1.1613 -3.4845 28 1 2.4157 -2.7377 0.9717 29 1 1.6237 -2.2852 2.5002 30 1 0.6904 -2.3002 0.9847 31 1 1.1233 1.5163 2.9337 32 1 1.2176 0.0480 3.9355 33 1 0.5709 2.2155 5.2002 34 1 1.6040 1.5168 6.4920 35 1 2.9594 3.5042 6.6401 36 1 1.3677 4.2358 6.2419 37 1 3.4847 4.7054 4.6166 38 1 1.8831 4.3624 3.8976 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063155930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:30 Heat of formation + Delta-G solvation = -114.961123 kcal Electronic energy + Delta-G solvation = -20952.621328 eV Core-core repulsion = 17729.628754 eV Total energy + Delta-G solvation = -3222.992573 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.58330 -36.43155 -36.12983 -35.14403 -32.54645 -32.48084 -31.75797 -29.05475 -26.52535 -25.53572 -25.07325 -22.06430 -21.51274 -20.53085 -18.06009 -17.21161 -16.88462 -16.47770 -16.03160 -15.77805 -15.30679 -14.57250 -14.41037 -13.78161 -13.46380 -13.37205 -13.10054 -12.76664 -12.37969 -12.03074 -11.91600 -11.90977 -11.64746 -11.37986 -11.31503 -11.31023 -11.14126 -11.06950 -10.91241 -10.75028 -10.45195 -10.24752 -10.10341 -9.86767 -9.70937 -9.19263 -8.40942 -7.87460 -6.02676 -4.08160 0.90334 3.31529 3.39342 3.42000 3.47460 3.62912 4.22613 4.35800 4.44429 4.62395 4.66777 4.75127 4.90761 5.06776 5.19212 5.29039 5.40763 5.46102 5.50730 5.57752 5.62779 5.69166 5.83869 5.96010 6.17581 6.40995 6.64928 6.76709 6.81209 6.84478 7.03560 7.48437 7.68129 7.83950 8.08157 8.32827 8.94372 9.57170 11.03363 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.005359 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.447412 B = 5223.245555 C = 5490.391188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.264 3.736 3 H 0.062 0.938 4 C -0.514 4.514 5 H 0.063 0.937 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.986 5.986 13 C 0.109 3.891 14 S 2.609 3.391 15 O -0.976 6.976 16 O -0.933 6.933 17 C -0.658 4.658 18 C 0.090 3.910 19 H 0.093 0.907 20 C -0.143 4.143 21 C -0.158 4.158 22 C 0.048 3.952 23 O -0.369 6.369 24 H 0.008 0.992 25 H 0.094 0.906 26 H 0.034 0.966 27 H 0.262 0.738 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 2.698 16.116 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.161 3.839 3 H 0.080 0.920 4 C -0.553 4.553 5 H 0.081 0.919 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.209 1.209 12 N -0.826 5.826 13 C -0.038 4.038 14 S 2.700 3.300 15 O -0.966 6.966 16 O -0.923 6.923 17 C -0.784 4.784 18 C 0.031 3.969 19 H 0.111 0.889 20 C -0.182 4.182 21 C -0.196 4.196 22 C -0.028 4.028 23 O -0.288 6.288 24 H 0.027 0.973 25 H 0.112 0.888 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.502 2.851 15.805 16.130 hybrid contribution -0.769 -0.344 -0.514 0.987 sum -2.272 2.507 15.291 15.661 Atomic orbital electron populations 1.22162 0.98503 0.99778 1.00581 1.18776 0.90994 0.93396 0.80699 0.91996 1.21363 1.31205 1.12841 0.89938 0.91878 1.24909 0.95049 0.95043 0.98997 1.69871 1.36872 1.22824 1.23589 0.86436 0.78561 0.79695 0.82697 1.19721 1.21061 1.20906 1.57514 1.70667 1.19386 1.35000 1.21148 1.01626 0.82322 0.98678 1.05035 0.75742 0.74520 0.74716 1.93513 1.67672 1.56530 1.78878 1.93602 1.72108 1.60245 1.66362 1.31230 1.18575 1.12261 1.16300 1.22333 0.94193 0.88907 0.91451 0.88949 1.23158 0.99727 0.96549 0.98732 1.23309 1.01415 0.96682 0.98163 1.23439 0.99144 0.87842 0.92407 1.88601 1.62456 1.13786 1.63924 0.97257 0.88764 0.94656 0.92824 0.93133 0.93393 0.91072 0.84601 0.84826 0.89814 0.89623 0.90181 0.89701 0.89294 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.95 37.16 0.33 -3.08 16 2 C 0.26 6.57 2.57 -69.08 -0.18 6.40 16 3 H 0.06 1.70 6.87 -51.93 -0.36 1.35 16 4 C -0.51 -14.16 8.37 -34.44 -0.29 -14.45 16 5 H 0.06 1.75 7.65 -52.49 -0.40 1.35 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 N -0.99 -20.88 2.99 -115.86 -0.35 -21.23 16 13 C 0.11 1.96 9.44 59.84 0.56 2.53 16 14 S 2.61 52.25 5.24 -107.50 -0.56 51.69 16 15 O -0.98 -20.64 17.09 -57.54 -0.98 -21.63 16 16 O -0.93 -22.78 16.18 -58.95 -0.95 -23.73 16 17 C -0.66 -9.52 5.73 37.16 0.21 -9.31 16 18 C 0.09 1.22 3.51 -26.00 -0.09 1.13 16 19 H 0.09 1.17 8.14 -51.94 -0.42 0.75 16 20 C -0.14 -1.37 6.54 -24.78 -0.16 -1.53 16 21 C -0.16 -1.35 7.16 -24.48 -0.18 -1.52 16 22 C 0.05 0.55 7.78 38.19 0.30 0.84 16 23 O -0.37 -5.83 10.47 -35.28 -0.37 -6.20 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 26 H 0.03 0.75 6.66 -51.93 -0.35 0.40 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.70 7.79 -51.93 -0.40 0.30 16 30 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 31 H 0.14 1.94 8.14 -51.93 -0.42 1.51 16 32 H 0.13 1.51 8.14 -51.92 -0.42 1.09 16 33 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -33.91 318.54 -8.32 -42.23 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.93 Total: -0.51 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 0.42 Total: -17.38 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: 0.28 Total: -45.77 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: -2.31 Total: -51.55 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 52.25 SS G_CDS: -0.56 Total: 51.69 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.91 -8.32 -42.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063155930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.732 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds