Wall clock time and date at job start Mon Mar 30 2020 01:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.50706 * 109.47103 * 240.00064 * 2 1 3 5 5 H 1.07999 * 119.99515 * 240.00498 * 4 2 1 6 6 C 1.37870 * 120.00176 * 59.99965 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47216 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47389 * 119.99848 * 8 6 4 11 11 H 1.48501 * 109.47057 * 239.99829 * 8 6 4 12 12 N 1.46496 * 109.47194 * 120.00051 * 2 1 3 13 13 C 1.46494 * 120.00253 * 59.99848 * 12 2 1 14 14 S 1.65603 * 119.99847 * 240.00018 * 12 2 1 15 15 O 1.42102 * 104.27393 * 206.07043 * 14 12 2 16 16 O 1.42095 * 104.27873 * 333.92514 * 14 12 2 17 17 C 1.81398 * 104.44976 * 89.99765 * 14 12 2 18 18 C 1.53004 * 109.46827 * 179.97438 * 17 14 12 19 19 H 1.08988 * 109.83064 * 305.56792 * 18 17 14 20 20 C 1.54385 * 109.82837 * 184.58391 * 18 17 14 21 21 C 1.55306 * 102.25654 * 219.13212 * 20 18 17 22 22 C 1.54949 * 100.93913 * 34.13424 * 21 20 18 23 23 O 1.43237 * 109.82885 * 66.46091 * 18 17 14 24 24 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 25 25 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 26 26 H 1.08992 * 109.47280 * 179.97438 * 1 2 3 27 27 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.47438 * 90.00207 * 13 12 2 29 29 H 1.09000 * 109.47621 * 210.00437 * 13 12 2 30 30 H 1.09004 * 109.47284 * 329.99873 * 13 12 2 31 31 H 1.08996 * 109.47248 * 300.00013 * 17 14 12 32 32 H 1.09000 * 109.46999 * 60.00232 * 17 14 12 33 33 H 1.09001 * 110.84946 * 337.33002 * 20 18 17 34 34 H 1.09005 * 110.84158 * 100.94304 * 20 18 17 35 35 H 1.08997 * 111.12228 * 276.22083 * 21 20 18 36 36 H 1.08996 * 111.15946 * 152.06941 * 21 20 18 37 37 H 1.08998 * 110.30912 * 204.63655 * 22 21 20 38 38 H 1.09000 * 110.38848 * 82.51423 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2870 -3.6038 10 1 1.1661 -1.5868 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0931 1.4280 14 16 2.9704 0.1142 2.2862 15 8 3.7315 -0.9106 2.9104 16 8 3.6005 1.1302 1.5181 17 6 1.7964 0.8414 3.4624 18 6 2.5634 1.6202 4.5329 19 1 3.3077 0.9741 4.9982 20 6 1.5817 2.1460 5.6022 21 6 2.1530 3.5573 5.9088 22 6 2.6901 3.9664 4.5141 23 8 3.2067 2.7548 3.9409 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.7089 1.1613 -3.4845 28 1 2.4157 -2.7377 0.9717 29 1 1.6237 -2.2852 2.5002 30 1 0.6904 -2.3002 0.9847 31 1 1.1233 1.5163 2.9337 32 1 1.2176 0.0480 3.9355 33 1 0.5709 2.2155 5.2002 34 1 1.6040 1.5168 6.4920 35 1 2.9594 3.5042 6.6401 36 1 1.3677 4.2358 6.2419 37 1 3.4847 4.7054 4.6166 38 1 1.8831 4.3624 3.8976 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063155930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:29 Heat of formation + Delta-G solvation = -140.502767 kcal Electronic energy + Delta-G solvation = -20953.728896 eV Core-core repulsion = 17729.628754 eV Total energy + Delta-G solvation = -3224.100142 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.52105 -38.11940 -37.86114 -36.83113 -34.52000 -33.48040 -32.67106 -30.89131 -27.55649 -27.26585 -26.89826 -22.92011 -22.66517 -22.09457 -19.68263 -18.56791 -18.38233 -18.13996 -17.28711 -17.09579 -16.91170 -16.38157 -15.47360 -15.28147 -14.80534 -14.59051 -14.51192 -14.25644 -13.70072 -13.41897 -13.26790 -13.13627 -13.06402 -13.01669 -12.95648 -12.76469 -12.70778 -12.54144 -12.22316 -12.15998 -12.10759 -11.89460 -11.74827 -11.33473 -11.11583 -10.71647 -10.50042 -9.57399 -8.11773 -6.24625 -0.61458 1.39708 1.42713 1.53506 1.88864 2.43815 2.72599 2.99297 3.16269 3.30881 3.39652 3.60817 3.87334 3.97797 4.12151 4.15212 4.32807 4.45029 4.53687 4.69893 4.81121 4.85537 4.89071 4.92242 4.99565 5.00953 5.05354 5.14113 5.21688 5.24797 5.62133 5.76121 5.90541 5.92846 6.16531 6.32321 6.82733 7.43891 8.92609 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.005359 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.447412 B = 5223.245555 C = 5490.391188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.268 3.732 3 H 0.025 0.975 4 C -0.536 4.536 5 H 0.051 0.949 6 C 0.016 3.984 7 N -0.914 5.914 8 Si 0.955 3.045 9 H -0.273 1.273 10 H -0.271 1.271 11 H -0.284 1.284 12 N -0.997 5.997 13 C 0.101 3.899 14 S 2.597 3.403 15 O -0.997 6.997 16 O -0.993 6.993 17 C -0.620 4.620 18 C 0.073 3.927 19 H 0.097 0.903 20 C -0.136 4.136 21 C -0.147 4.147 22 C 0.031 3.969 23 O -0.411 6.411 24 H 0.041 0.959 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.033 0.967 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.143 0.857 32 H 0.178 0.822 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 2.400 18.381 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.164 3.836 3 H 0.043 0.957 4 C -0.576 4.576 5 H 0.069 0.931 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.196 1.196 11 H -0.210 1.210 12 N -0.835 5.835 13 C -0.044 4.044 14 S 2.696 3.304 15 O -0.987 6.987 16 O -0.984 6.984 17 C -0.753 4.753 18 C 0.013 3.987 19 H 0.114 0.886 20 C -0.174 4.174 21 C -0.185 4.185 22 C -0.045 4.045 23 O -0.331 6.331 24 H 0.060 0.940 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.161 0.839 32 H 0.196 0.804 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.123 2.507 18.029 18.468 hybrid contribution -0.223 -0.193 -1.109 1.148 sum -3.346 2.314 16.920 17.402 Atomic orbital electron populations 1.21952 0.96531 1.00516 1.00792 1.18437 0.92335 0.91511 0.81343 0.95704 1.21674 1.31365 1.12806 0.91730 0.93099 1.25631 0.95290 0.95770 1.01615 1.69979 1.37471 1.23679 1.24249 0.85557 0.78345 0.78528 0.79496 1.19725 1.19609 1.20998 1.57343 1.70492 1.20768 1.34894 1.21362 1.01436 0.80448 1.01191 1.05040 0.76471 0.73709 0.75207 1.93474 1.69246 1.57205 1.78800 1.93528 1.74591 1.61446 1.68797 1.30908 1.16519 1.13312 1.14574 1.22698 0.95390 0.88672 0.91919 0.88555 1.23208 0.98897 0.97140 0.98176 1.23314 1.02341 0.96504 0.96312 1.23737 0.99618 0.86830 0.94284 1.88586 1.63626 1.15632 1.65240 0.94010 0.91505 0.93538 0.92634 0.94809 0.89523 0.90139 0.83862 0.80449 0.88759 0.86895 0.89152 0.87177 0.88545 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.17 8.95 71.98 0.64 -5.52 16 2 C 0.27 13.58 2.57 44.25 0.11 13.70 16 3 H 0.03 1.44 6.87 -2.39 -0.02 1.43 16 4 C -0.54 -30.30 8.37 25.60 0.21 -30.09 16 5 H 0.05 2.91 7.65 -2.91 -0.02 2.89 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.91 -52.50 11.32 21.45 0.24 -52.26 16 8 Si 0.96 44.70 29.54 68.60 2.03 46.73 16 9 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 N -1.00 -42.16 2.99 -520.46 -1.56 -43.72 16 13 C 0.10 3.54 9.44 127.77 1.21 4.74 16 14 S 2.60 104.44 5.24 -56.49 -0.30 104.15 16 15 O -1.00 -42.16 17.09 -127.65 -2.18 -44.34 16 16 O -0.99 -50.87 16.18 -126.30 -2.04 -52.91 16 17 C -0.62 -16.32 5.73 71.98 0.41 -15.91 16 18 C 0.07 1.78 3.51 31.07 0.11 1.89 16 19 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 20 C -0.14 -1.99 6.54 31.86 0.21 -1.79 16 21 C -0.15 -1.98 7.16 32.05 0.23 -1.75 16 22 C 0.03 0.66 7.78 72.65 0.56 1.22 16 23 O -0.41 -12.76 10.47 -148.93 -1.56 -14.32 16 24 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 25 H 0.07 3.37 6.07 -2.39 -0.01 3.35 16 26 H 0.05 1.91 6.66 -2.39 -0.02 1.90 16 27 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 2.31 7.79 -2.39 -0.02 2.30 16 30 H 0.08 2.64 6.43 -2.39 -0.02 2.62 16 31 H 0.14 3.70 8.14 -2.39 -0.02 3.68 16 32 H 0.18 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.09 1.22 7.85 -2.39 -0.02 1.20 16 34 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -77.27 318.54 -0.18 -77.45 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.03 Total: 11.35 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: 4.15 Total: -32.13 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -1.32 Total: -95.98 kcal Atomic # 8 Polarization: -105.78 SS G_CDS: -5.78 Total: -111.57 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 104.44 SS G_CDS: -0.30 Total: 104.15 kcal Total: -77.27 -0.18 -77.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063155930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.054 kcal (2) G-P(sol) polarization free energy of solvation -77.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds