Wall clock time and date at job start Mon Mar 30 2020 01:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34706 * 116.99744 * 2 1 4 4 O 1.21472 * 120.00205 * 359.97438 * 3 2 1 5 5 C 1.47746 * 119.99922 * 180.02562 * 3 2 1 6 6 C 1.39750 * 120.07835 * 359.97438 * 5 3 2 7 7 C 1.38044 * 120.14011 * 179.77157 * 6 5 3 8 8 C 1.38108 * 120.30076 * 0.51315 * 7 6 5 9 9 C 1.39677 * 120.15639 * 359.48340 * 8 7 6 10 10 C 1.47852 * 120.07343 * 180.27985 * 9 8 7 11 11 O 1.21555 * 120.00116 * 180.02562 * 10 9 8 12 12 N 1.34774 * 120.00339 * 0.02562 * 10 9 8 13 13 C 1.46500 * 120.00347 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47046 * 34.99626 * 13 12 10 15 15 C 1.52999 * 109.46949 * 274.99856 * 13 12 10 16 16 C 1.50706 * 109.47181 * 155.00075 * 13 12 10 17 17 H 1.07997 * 119.99674 * 0.02562 * 16 13 12 18 18 C 1.37875 * 120.00001 * 179.97438 * 16 13 12 19 19 N 1.31518 * 119.99570 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 120.00058 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47193 * 60.00266 * 20 18 16 22 22 H 1.48497 * 109.47300 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47229 * 300.00063 * 20 18 16 24 24 C 1.39327 * 119.85405 * 0.25999 * 9 8 7 25 25 H 1.08992 * 109.47321 * 300.00182 * 1 2 3 26 26 H 1.09002 * 109.47218 * 60.00207 * 1 2 3 27 27 H 1.08999 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.93007 * 0.02562 * 6 5 3 29 29 H 1.07996 * 119.85476 * 180.25504 * 7 6 5 30 30 H 1.08002 * 119.92597 * 179.76973 * 8 7 6 31 31 H 0.97008 * 119.99456 * 0.02562 * 12 10 9 32 32 H 1.09009 * 109.47180 * 300.00150 * 15 13 12 33 33 H 1.08997 * 109.47077 * 59.99593 * 15 13 12 34 34 H 1.08994 * 109.47439 * 180.02562 * 15 13 12 35 35 H 0.97007 * 119.99273 * 179.97438 * 19 18 16 36 36 H 1.07999 * 120.14627 * 179.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5390 1.2776 -0.0006 6 6 4.3017 0.1067 -0.0006 7 6 5.6803 0.1775 -0.0059 8 6 6.3151 1.4040 -0.0005 9 6 5.5650 2.5823 -0.0006 10 6 6.2465 3.8944 -0.0011 11 8 5.5924 4.9190 -0.0007 12 7 7.5929 3.9545 -0.0020 13 6 8.2681 5.2546 -0.0020 14 1 7.6889 5.9648 0.5881 15 6 8.3906 5.7657 -1.4389 16 6 9.6429 5.1067 0.5975 17 1 9.9800 4.1407 0.9433 18 6 10.4706 6.2043 0.7033 19 7 10.0601 7.3804 0.2816 20 14 12.1743 6.0211 1.4470 21 1 12.9634 5.0528 0.6438 22 1 12.8592 7.3386 1.4458 23 1 12.0549 5.5259 2.8419 24 6 4.1732 2.5184 -0.0006 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.8116 -0.8557 -0.0006 29 1 6.2653 -0.7304 -0.0100 30 1 7.3940 1.4523 -0.0009 31 1 8.1148 3.1369 -0.0027 32 1 8.9698 5.0554 -2.0290 33 1 7.3963 5.8727 -1.8724 34 1 8.8934 6.7328 -1.4390 35 1 10.6423 8.1527 0.3564 36 1 3.5886 3.4265 -0.0002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064346501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:29 Heat of formation + Delta-G solvation = -98.659890 kcal Electronic energy + Delta-G solvation = -20479.997488 eV Core-core repulsion = 17122.267838 eV Total energy + Delta-G solvation = -3357.729650 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.75378 -39.59610 -37.92137 -36.58591 -34.87987 -32.69825 -31.65230 -31.18143 -28.86311 -27.89933 -25.29106 -24.32568 -23.75161 -21.40004 -20.95441 -19.57724 -18.53007 -17.38381 -16.69924 -16.55460 -16.20131 -15.77440 -15.35512 -14.68260 -14.39480 -14.30485 -13.94367 -13.79701 -13.61290 -13.10347 -12.54717 -12.45092 -12.37833 -12.04785 -11.72495 -11.40774 -11.12810 -11.04606 -10.98357 -10.77873 -10.71712 -10.36083 -10.25790 -9.25402 -9.24306 -9.12450 -9.06248 -8.58230 -7.98060 -6.14670 -4.24633 0.46686 0.98977 2.29285 2.42685 3.23864 3.25303 3.29636 3.30484 3.92884 4.02970 4.33846 4.45443 4.67565 4.78747 4.85048 4.92594 5.03127 5.14010 5.17664 5.21054 5.34241 5.57717 5.76042 6.02172 6.06965 6.16883 6.27553 6.59324 6.80476 6.93852 7.11533 7.38571 7.51167 7.54131 7.65417 7.87747 8.11632 8.57296 8.72899 9.01597 9.42672 10.91308 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.038569 B = 0.003378 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.804338 B = 8287.726202 C = 8753.267146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.510 3.490 4 O -0.500 6.500 5 C -0.139 4.139 6 C -0.049 4.049 7 C -0.139 4.139 8 C -0.052 4.052 9 C -0.130 4.130 10 C 0.541 3.459 11 O -0.545 6.545 12 N -0.700 5.700 13 C 0.264 3.736 14 H 0.051 0.949 15 C -0.148 4.148 16 C -0.536 4.536 17 H 0.061 0.939 18 C 0.067 3.933 19 N -0.883 5.883 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.001 4.001 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.388 0.612 32 H 0.027 0.973 33 H 0.016 0.984 34 H 0.091 0.909 35 H 0.266 0.734 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.523 -18.006 -1.213 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.355 3.645 4 O -0.388 6.388 5 C -0.140 4.140 6 C -0.067 4.067 7 C -0.157 4.157 8 C -0.071 4.071 9 C -0.134 4.134 10 C 0.326 3.674 11 O -0.424 6.424 12 N -0.348 5.348 13 C 0.163 3.837 14 H 0.069 0.931 15 C -0.207 4.207 16 C -0.575 4.575 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.730 3.270 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.020 4.020 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.157 0.843 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.222 0.778 32 H 0.046 0.954 33 H 0.035 0.965 34 H 0.110 0.890 35 H 0.076 0.924 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.118 -16.726 -1.229 20.691 hybrid contribution 1.003 -0.438 0.369 1.155 sum -11.115 -17.165 -0.860 20.467 Atomic orbital electron populations 1.23284 0.75924 1.03704 1.02792 1.86523 1.23601 1.32669 1.84549 1.21178 0.89057 0.81459 0.72808 1.90869 1.66669 1.35952 1.45353 1.18976 0.89013 0.94812 1.11215 1.21570 0.94000 0.97761 0.93372 1.21103 0.94213 0.98035 1.02380 1.21746 1.00726 0.91723 0.92873 1.20290 0.93703 0.94645 1.04728 1.18107 0.83371 0.87742 0.78176 1.90758 1.65377 1.35339 1.50969 1.46497 1.04813 1.11968 1.71481 1.18807 0.91696 0.79046 0.94180 0.93117 1.22089 0.97987 1.03356 0.97220 1.21158 0.98986 0.95530 1.41805 0.92077 1.24888 0.98669 0.95001 0.95110 1.69897 1.36910 0.99521 1.45639 0.86488 0.83435 0.77390 0.79663 1.20144 1.21100 1.20143 1.21406 0.93582 0.97290 0.89706 0.91742 0.91755 0.87967 0.84260 0.84496 0.84498 0.77845 0.95386 0.96522 0.89005 0.92442 0.83174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.74 9.81 -40.51 -0.40 -4.14 16 3 C 0.51 6.77 7.90 34.62 0.27 7.04 16 4 O -0.50 -8.06 16.13 -19.24 -0.31 -8.37 16 5 C -0.14 -1.80 5.87 -105.03 -0.62 -2.42 16 6 C -0.05 -0.49 9.61 -39.09 -0.38 -0.86 16 7 C -0.14 -1.33 10.02 -39.70 -0.40 -1.72 16 8 C -0.05 -0.62 9.54 -39.09 -0.37 -1.00 16 9 C -0.13 -2.06 5.87 -105.02 -0.62 -2.68 16 10 C 0.54 11.09 7.74 -12.33 -0.10 10.99 16 11 O -0.54 -13.40 16.00 5.32 0.09 -13.31 16 12 N -0.70 -14.46 5.02 -55.87 -0.28 -14.74 16 13 C 0.26 6.69 2.56 -69.08 -0.18 6.51 16 14 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 15 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 16 C -0.54 -14.02 8.73 -34.44 -0.30 -14.32 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 19 N -0.88 -24.73 11.32 55.43 0.63 -24.10 16 20 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.00 -0.01 9.14 -38.76 -0.35 -0.37 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.14 1.05 7.60 -52.49 -0.40 0.65 16 29 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.14 1.41 6.39 -52.49 -0.34 1.07 16 31 H 0.39 6.71 6.56 -40.82 -0.27 6.44 16 32 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 35 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.15 2.59 7.23 -52.49 -0.38 2.21 16 LS Contribution 317.46 15.07 4.78 4.78 Total: -1.00 -32.54 317.46 -6.39 -38.94 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.17 Total: 4.70 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.72 Total: 0.87 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.35 Total: -38.84 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.62 Total: -25.82 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.54 -6.39 -38.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064346501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.721 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds