Wall clock time and date at job start Mon Mar 30 2020 01:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47011 * 2 1 4 4 C 1.36871 * 120.00270 * 263.90127 * 3 2 1 5 5 H 1.08002 * 119.99981 * 132.22965 * 4 3 2 6 6 C 1.39041 * 119.99890 * 312.22189 * 4 3 2 7 7 N 1.31370 * 119.99907 * 164.54577 * 6 4 3 8 8 Si 1.86797 * 120.00369 * 344.54854 * 6 4 3 9 9 H 1.48501 * 109.47163 * 91.86476 * 8 6 4 10 10 H 1.48500 * 109.47452 * 211.86831 * 8 6 4 11 11 H 1.48509 * 109.46906 * 331.86801 * 8 6 4 12 12 C 1.34780 * 119.99641 * 83.89917 * 3 2 1 13 13 O 1.21590 * 119.99980 * 0.09648 * 12 3 2 14 14 C 1.47742 * 120.00114 * 180.09180 * 12 3 2 15 15 C 1.39780 * 120.07524 * 328.08214 * 14 12 3 16 16 C 1.38042 * 120.14824 * 179.78626 * 15 14 12 17 17 C 1.38109 * 120.31061 * 0.47167 * 16 15 14 18 18 C 1.39735 * 120.14617 * 359.78452 * 17 16 15 19 19 C 1.47747 * 120.06881 * 180.02562 * 18 17 16 20 20 O 1.21472 * 119.99439 * 179.97438 * 19 18 17 21 21 O 1.34702 * 120.00560 * 359.97438 * 19 18 17 22 22 C 1.45197 * 117.00404 * 180.02562 * 21 19 18 23 23 C 1.39352 * 120.07742 * 148.35866 * 14 12 3 24 24 H 1.08996 * 109.47370 * 55.16313 * 1 2 3 25 25 H 1.09002 * 109.46475 * 175.16416 * 1 2 3 26 26 H 1.08996 * 109.46736 * 295.15809 * 1 2 3 27 27 H 1.09001 * 109.47433 * 120.00652 * 2 1 3 28 28 H 1.09003 * 109.47097 * 240.00251 * 2 1 3 29 29 H 0.97005 * 119.99706 * 179.97438 * 7 6 4 30 30 H 1.08001 * 119.92503 * 359.97438 * 15 14 12 31 31 H 1.07998 * 119.84821 * 180.23520 * 16 15 14 32 32 H 1.07991 * 119.92369 * 179.76654 * 17 16 15 33 33 H 1.08994 * 109.47269 * 59.99311 * 22 21 19 34 34 H 1.08999 * 109.47280 * 179.97438 * 22 21 19 35 35 H 1.09002 * 109.46618 * 299.99630 * 22 21 19 36 36 H 1.08001 * 120.15290 * 359.95519 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3652 1.9845 -1.1786 5 1 2.0027 2.9765 -1.4046 6 6 3.1843 1.3204 -2.0848 7 7 3.2746 1.7474 -3.3239 8 14 4.1563 -0.1791 -1.5406 9 1 3.3609 -1.4058 -1.8008 10 1 5.4308 -0.2452 -2.2997 11 1 4.4498 -0.0783 -0.0883 12 6 2.1260 2.0579 1.1607 13 8 1.8195 1.5213 2.2079 14 6 2.6165 3.4515 1.1606 15 6 3.5511 3.8651 0.2070 16 6 4.0071 5.1680 0.2028 17 6 3.5515 6.0690 1.1452 18 6 2.6213 5.6677 2.1076 19 6 2.1347 6.6331 3.1146 20 8 1.3256 6.2829 3.9503 21 8 2.5881 7.9015 3.1060 22 6 2.0669 8.7948 4.1251 23 6 2.1528 4.3551 2.1147 24 1 -0.3634 0.5870 -0.8434 25 1 -0.3632 -1.0241 -0.0866 26 1 -0.3632 0.4369 0.9302 27 1 1.8934 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.8464 1.2842 -3.9560 30 1 3.9149 3.1645 -0.5300 31 1 4.7263 5.4833 -0.5386 32 1 3.9153 7.0857 1.1384 33 1 2.3124 8.4027 5.1120 34 1 2.5131 9.7821 4.0056 35 1 0.9843 8.8701 4.0230 36 1 1.4335 4.0399 2.8561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068240585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:12 Heat of formation + Delta-G solvation = -83.017104 kcal Electronic energy + Delta-G solvation = -21375.937015 eV Core-core repulsion = 18018.885687 eV Total energy + Delta-G solvation = -3357.051328 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41484 -39.42723 -37.64794 -36.28451 -35.23497 -32.40098 -31.59218 -30.70661 -29.65941 -27.69674 -25.18353 -23.81078 -23.64627 -21.86729 -20.81196 -19.42751 -18.14632 -17.06087 -16.61610 -16.28036 -15.98836 -15.61483 -15.36987 -14.39617 -14.28299 -13.91568 -13.62361 -13.39163 -13.34039 -13.20006 -12.73266 -12.37427 -12.19956 -12.15644 -11.80290 -11.60859 -11.28651 -11.12102 -10.88251 -10.82417 -10.80437 -10.35098 -10.16418 -10.01621 -9.36175 -8.80008 -8.63691 -8.49505 -7.81960 -6.62083 -4.32079 1.03592 1.53186 2.73232 2.75121 2.97077 3.12621 3.21053 3.63079 3.99693 4.20637 4.37621 4.78554 4.85987 5.03183 5.10803 5.27273 5.29132 5.42174 5.65303 5.78015 5.79557 5.83024 6.01851 6.09440 6.18845 6.29656 6.38520 6.39452 6.55288 6.62713 6.82381 6.86588 6.97939 7.22619 7.31396 7.85661 7.93464 8.10477 8.77708 9.15177 9.52323 10.45588 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.025013 B = 0.005252 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.148995 B = 5330.182655 C = 6046.283907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.098 3.902 3 N -0.459 5.459 4 C -0.349 4.349 5 H 0.105 0.895 6 C 0.070 3.930 7 N -0.855 5.855 8 Si 0.872 3.128 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.258 1.258 12 C 0.525 3.475 13 O -0.587 6.587 14 C -0.114 4.114 15 C -0.020 4.020 16 C -0.154 4.154 17 C -0.052 4.052 18 C -0.156 4.156 19 C 0.514 3.486 20 O -0.511 6.511 21 O -0.357 6.357 22 C 0.037 3.963 23 C -0.012 4.012 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.278 0.722 30 H 0.171 0.829 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.648 8.237 5.423 9.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.025 4.025 3 N -0.179 5.179 4 C -0.476 4.476 5 H 0.123 0.877 6 C -0.139 4.139 7 N -0.488 5.488 8 Si 0.698 3.302 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.182 1.182 12 C 0.315 3.685 13 O -0.472 6.472 14 C -0.117 4.117 15 C -0.038 4.038 16 C -0.172 4.172 17 C -0.071 4.071 18 C -0.157 4.157 19 C 0.360 3.640 20 O -0.400 6.400 21 O -0.274 6.274 22 C -0.057 4.057 23 C -0.032 4.032 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.188 0.812 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.319 7.842 5.970 9.944 hybrid contribution 0.345 -0.606 0.053 0.699 sum 1.664 7.236 6.023 9.561 Atomic orbital electron populations 1.22002 0.96356 1.00889 1.02303 1.21624 0.94642 0.85042 1.01199 1.43574 1.56751 1.11694 1.05888 1.19068 1.30561 1.04292 0.93696 0.87728 1.25469 0.95956 0.97780 0.94717 1.69695 1.36146 1.40567 1.02437 0.86937 0.80005 0.82893 0.80374 1.19644 1.20991 1.18218 1.18277 0.80372 0.86244 0.83641 1.90656 1.54474 1.70294 1.31733 1.19873 1.00112 0.94708 0.97019 1.22708 0.90813 0.96282 0.93995 1.21205 1.02245 0.93930 0.99822 1.21496 0.93453 0.99747 0.92377 1.18796 1.04824 0.93015 0.99087 1.21303 0.78418 0.81100 0.83221 1.90822 1.32360 1.78730 1.38071 1.86542 1.65388 1.21758 1.53715 1.23231 0.99909 0.92208 0.90335 1.21251 0.95942 0.90094 0.95879 0.92046 0.92930 0.92640 0.91672 0.91125 0.91150 0.81219 0.85076 0.85028 0.91972 0.88186 0.91945 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.19 37.16 0.38 -2.59 16 2 C 0.10 2.09 4.59 -4.04 -0.02 2.07 16 3 N -0.46 -10.68 2.01 -115.92 -0.23 -10.91 16 4 C -0.35 -8.38 6.33 -15.00 -0.10 -8.48 16 5 H 0.11 2.68 7.13 -52.49 -0.37 2.30 16 6 C 0.07 1.68 4.94 -17.45 -0.09 1.60 16 7 N -0.85 -21.63 13.95 55.50 0.77 -20.86 16 8 Si 0.87 19.06 25.24 -169.99 -4.29 14.77 16 9 H -0.27 -5.75 6.71 56.52 0.38 -5.37 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 12 C 0.52 12.34 7.36 -12.37 -0.09 12.25 16 13 O -0.59 -14.89 16.43 5.29 0.09 -14.80 16 14 C -0.11 -2.39 5.51 -105.02 -0.58 -2.96 16 15 C -0.02 -0.38 7.97 -39.08 -0.31 -0.69 16 16 C -0.15 -2.42 10.02 -39.70 -0.40 -2.82 16 17 C -0.05 -0.78 9.61 -39.07 -0.38 -1.15 16 18 C -0.16 -2.65 5.87 -105.03 -0.62 -3.27 16 19 C 0.51 8.43 7.90 34.62 0.27 8.70 16 20 O -0.51 -9.56 16.13 -19.24 -0.31 -9.87 16 21 O -0.36 -4.80 9.81 -40.50 -0.40 -5.20 16 22 C 0.04 0.36 10.56 101.05 1.07 1.43 16 23 C -0.01 -0.24 9.14 -38.75 -0.35 -0.59 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.38 7.61 -51.93 -0.40 0.99 16 28 H 0.07 1.51 4.43 -51.93 -0.23 1.28 16 29 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.17 3.53 5.28 -52.49 -0.28 3.25 16 31 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.13 1.58 7.60 -52.49 -0.40 1.19 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.14 2.80 7.53 -52.49 -0.40 2.40 16 LS Contribution 309.27 15.07 4.66 4.66 Total: -1.00 -28.77 309.27 -5.10 -33.87 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.19 Total: 4.85 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -1.21 Total: 3.48 kcal Atomic # 7 Polarization: -32.31 SS G_CDS: 0.54 Total: -31.77 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.62 Total: -29.86 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.29 Total: 14.77 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.77 -5.10 -33.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.143 kcal (2) G-P(sol) polarization free energy of solvation -28.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds