Wall clock time and date at job start Mon Mar 30 2020 01:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47011 * 2 1 4 4 C 1.36871 * 120.00270 * 263.90127 * 3 2 1 5 5 H 1.08002 * 119.99981 * 132.22965 * 4 3 2 6 6 C 1.39041 * 119.99890 * 312.22189 * 4 3 2 7 7 N 1.31370 * 119.99907 * 164.54577 * 6 4 3 8 8 Si 1.86797 * 120.00369 * 344.54854 * 6 4 3 9 9 H 1.48501 * 109.47163 * 91.86476 * 8 6 4 10 10 H 1.48500 * 109.47452 * 211.86831 * 8 6 4 11 11 H 1.48509 * 109.46906 * 331.86801 * 8 6 4 12 12 C 1.34780 * 119.99641 * 83.89917 * 3 2 1 13 13 O 1.21590 * 119.99980 * 0.09648 * 12 3 2 14 14 C 1.47742 * 120.00114 * 180.09180 * 12 3 2 15 15 C 1.39780 * 120.07524 * 328.08214 * 14 12 3 16 16 C 1.38042 * 120.14824 * 179.78626 * 15 14 12 17 17 C 1.38109 * 120.31061 * 0.47167 * 16 15 14 18 18 C 1.39735 * 120.14617 * 359.78452 * 17 16 15 19 19 C 1.47747 * 120.06881 * 180.02562 * 18 17 16 20 20 O 1.21472 * 119.99439 * 179.97438 * 19 18 17 21 21 O 1.34702 * 120.00560 * 359.97438 * 19 18 17 22 22 C 1.45197 * 117.00404 * 180.02562 * 21 19 18 23 23 C 1.39352 * 120.07742 * 148.35866 * 14 12 3 24 24 H 1.08996 * 109.47370 * 55.16313 * 1 2 3 25 25 H 1.09002 * 109.46475 * 175.16416 * 1 2 3 26 26 H 1.08996 * 109.46736 * 295.15809 * 1 2 3 27 27 H 1.09001 * 109.47433 * 120.00652 * 2 1 3 28 28 H 1.09003 * 109.47097 * 240.00251 * 2 1 3 29 29 H 0.97005 * 119.99706 * 179.97438 * 7 6 4 30 30 H 1.08001 * 119.92503 * 359.97438 * 15 14 12 31 31 H 1.07998 * 119.84821 * 180.23520 * 16 15 14 32 32 H 1.07991 * 119.92369 * 179.76654 * 17 16 15 33 33 H 1.08994 * 109.47269 * 59.99311 * 22 21 19 34 34 H 1.08999 * 109.47280 * 179.97438 * 22 21 19 35 35 H 1.09002 * 109.46618 * 299.99630 * 22 21 19 36 36 H 1.08001 * 120.15290 * 359.95519 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3652 1.9845 -1.1786 5 1 2.0027 2.9765 -1.4046 6 6 3.1843 1.3204 -2.0848 7 7 3.2746 1.7474 -3.3239 8 14 4.1563 -0.1791 -1.5406 9 1 3.3609 -1.4058 -1.8008 10 1 5.4308 -0.2452 -2.2997 11 1 4.4498 -0.0783 -0.0883 12 6 2.1260 2.0579 1.1607 13 8 1.8195 1.5213 2.2079 14 6 2.6165 3.4515 1.1606 15 6 3.5511 3.8651 0.2070 16 6 4.0071 5.1680 0.2028 17 6 3.5515 6.0690 1.1452 18 6 2.6213 5.6677 2.1076 19 6 2.1347 6.6331 3.1146 20 8 1.3256 6.2829 3.9503 21 8 2.5881 7.9015 3.1060 22 6 2.0669 8.7948 4.1251 23 6 2.1528 4.3551 2.1147 24 1 -0.3634 0.5870 -0.8434 25 1 -0.3632 -1.0241 -0.0866 26 1 -0.3632 0.4369 0.9302 27 1 1.8934 -0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.8464 1.2842 -3.9560 30 1 3.9149 3.1645 -0.5300 31 1 4.7263 5.4833 -0.5386 32 1 3.9153 7.0857 1.1384 33 1 2.3124 8.4027 5.1120 34 1 2.5131 9.7821 4.0056 35 1 0.9843 8.8701 4.0230 36 1 1.4335 4.0399 2.8561 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068240585.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:12 Heat of formation + Delta-G solvation = -99.482832 kcal Electronic energy + Delta-G solvation = -21376.651022 eV Core-core repulsion = 18018.885687 eV Total energy + Delta-G solvation = -3357.765335 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.72697 -41.04540 -39.13039 -37.50315 -37.08926 -34.23149 -33.12970 -32.12298 -31.23868 -28.62997 -27.03744 -25.33785 -25.02562 -23.41121 -22.14921 -21.09338 -19.73464 -18.40183 -18.17604 -17.54863 -17.40258 -17.33313 -16.83367 -16.10800 -15.89049 -15.45106 -15.13383 -14.74622 -14.58178 -14.54155 -14.45465 -14.06213 -13.81133 -13.35318 -13.19636 -13.05144 -12.85660 -12.74399 -12.51059 -12.35563 -11.96854 -11.82851 -11.73366 -11.65591 -11.19120 -10.61551 -10.05110 -9.96641 -9.66659 -8.50582 -6.22478 -0.33595 0.07086 1.21753 1.33313 1.41227 1.44644 1.60244 1.97387 2.18705 2.53673 2.75644 3.02175 3.66608 3.88320 3.91464 4.09653 4.22659 4.29928 4.34751 4.35304 4.36534 4.46346 4.49630 4.69625 4.80273 4.83547 4.91229 4.98911 5.18600 5.21530 5.23974 5.45837 5.47658 5.52417 5.85050 6.05671 6.20549 6.63024 6.90006 7.28881 7.68095 8.60264 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.025013 B = 0.005252 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.148995 B = 5330.182655 C = 6046.283907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.088 3.912 3 N -0.465 5.465 4 C -0.340 4.340 5 H 0.084 0.916 6 C 0.047 3.953 7 N -0.884 5.884 8 Si 0.914 3.086 9 H -0.258 1.258 10 H -0.276 1.276 11 H -0.273 1.273 12 C 0.515 3.485 13 O -0.615 6.615 14 C -0.141 4.141 15 C -0.031 4.031 16 C -0.141 4.141 17 C -0.027 4.027 18 C -0.158 4.158 19 C 0.519 3.481 20 O -0.541 6.541 21 O -0.349 6.349 22 C 0.028 3.972 23 C -0.023 4.023 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.283 0.717 30 H 0.151 0.849 31 H 0.166 0.834 32 H 0.174 0.826 33 H 0.062 0.938 34 H 0.141 0.859 35 H 0.061 0.939 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 9.832 5.212 11.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.034 4.034 3 N -0.185 5.185 4 C -0.468 4.468 5 H 0.101 0.899 6 C -0.160 4.160 7 N -0.519 5.519 8 Si 0.739 3.261 9 H -0.183 1.183 10 H -0.202 1.202 11 H -0.197 1.197 12 C 0.307 3.693 13 O -0.502 6.502 14 C -0.144 4.144 15 C -0.049 4.049 16 C -0.159 4.159 17 C -0.045 4.045 18 C -0.159 4.159 19 C 0.366 3.634 20 O -0.433 6.433 21 O -0.265 6.265 22 C -0.065 4.065 23 C -0.043 4.043 24 H 0.072 0.928 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.168 0.832 31 H 0.184 0.816 32 H 0.191 0.809 33 H 0.081 0.919 34 H 0.159 0.841 35 H 0.080 0.920 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.395 9.447 5.738 11.310 hybrid contribution 0.012 -0.943 0.182 0.960 sum 2.407 8.504 5.920 10.638 Atomic orbital electron populations 1.21921 0.94458 1.02882 1.01320 1.21786 0.96344 0.84133 1.01126 1.43709 1.56817 1.12390 1.05602 1.18809 1.30575 1.03681 0.93718 0.89884 1.25789 0.96216 0.99502 0.94490 1.69733 1.37128 1.41894 1.03174 0.86278 0.79495 0.81265 0.79058 1.18286 1.20169 1.19749 1.18785 0.79857 0.87438 0.83264 1.90611 1.55824 1.71267 1.32526 1.19755 1.01964 0.93746 0.98897 1.22535 0.91150 0.97761 0.93476 1.21530 1.01880 0.92203 1.00238 1.21891 0.91198 1.01223 0.90207 1.18934 1.04974 0.92168 0.99862 1.21161 0.77824 0.82014 0.82436 1.90814 1.33758 1.79489 1.39204 1.86517 1.64905 1.20442 1.54678 1.23637 1.00379 0.92993 0.89475 1.21109 0.96330 0.91412 0.95450 0.92775 0.89459 0.93750 0.91857 0.90906 0.90640 0.83160 0.81615 0.80857 0.91944 0.84117 0.92008 0.86340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.54 10.19 71.98 0.73 -4.80 16 2 C 0.09 3.79 4.59 86.38 0.40 4.19 16 3 N -0.47 -22.16 2.01 -638.92 -1.28 -23.44 16 4 C -0.34 -16.66 6.33 84.10 0.53 -16.13 16 5 H 0.08 4.39 7.13 -2.91 -0.02 4.37 16 6 C 0.05 2.25 4.94 84.95 0.42 2.67 16 7 N -0.88 -44.65 13.95 21.68 0.30 -44.35 16 8 Si 0.91 38.90 25.24 68.60 1.73 40.63 16 9 H -0.26 -10.38 6.71 99.48 0.67 -9.71 16 10 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 C 0.52 25.14 7.36 86.76 0.64 25.78 16 13 O -0.62 -32.48 16.43 -4.00 -0.07 -32.55 16 14 C -0.14 -6.04 5.51 -20.12 -0.11 -6.15 16 15 C -0.03 -1.18 7.97 22.60 0.18 -1.00 16 16 C -0.14 -4.07 10.02 22.19 0.22 -3.84 16 17 C -0.03 -0.72 9.61 22.60 0.22 -0.50 16 18 C -0.16 -5.18 5.87 -20.13 -0.12 -5.30 16 19 C 0.52 16.26 7.90 70.34 0.56 16.82 16 20 O -0.54 -20.14 16.13 19.93 0.32 -19.82 16 21 O -0.35 -8.30 9.81 -56.12 -0.55 -8.85 16 22 C 0.03 0.46 10.56 113.37 1.20 1.66 16 23 C -0.02 -0.93 9.14 22.81 0.21 -0.73 16 24 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.06 2.72 7.61 -2.39 -0.02 2.70 16 28 H 0.07 3.06 4.43 -2.39 -0.01 3.05 16 29 H 0.28 13.34 8.31 -92.70 -0.77 12.57 16 30 H 0.15 6.34 5.28 -2.91 -0.02 6.33 16 31 H 0.17 3.66 8.06 -2.91 -0.02 3.64 16 32 H 0.17 3.21 7.60 -2.92 -0.02 3.19 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.14 1.18 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.12 5.09 7.53 -2.91 -0.02 5.07 16 Total: -1.00 -63.62 309.27 6.59 -57.03 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 1.06 Total: 18.69 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 5.07 Total: 12.66 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -0.98 Total: -67.78 kcal Atomic # 8 Polarization: -60.92 SS G_CDS: -0.29 Total: -61.22 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 1.73 Total: 40.63 kcal Total: -63.62 6.59 -57.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240585.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.456 kcal (2) G-P(sol) polarization free energy of solvation -63.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds