Wall clock time and date at job start Mon Mar 30 2020 02:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47061 * 119.99902 * 8 6 4 11 11 H 1.48503 * 109.47075 * 240.00004 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 O 1.42899 * 109.46876 * 179.72354 * 14 12 2 16 16 C 1.35910 * 116.99557 * 179.97438 * 15 14 12 17 17 C 1.38895 * 119.97632 * 359.72216 * 16 15 14 18 18 C 1.38285 * 120.29637 * 179.76415 * 17 16 15 19 19 C 1.37936 * 120.23672 * 0.51385 * 18 17 16 20 20 C 1.39840 * 119.93644 * 359.74215 * 19 18 17 21 21 C 1.47171 * 120.14714 * 180.02562 * 20 19 18 22 22 O 1.21259 * 120.00181 * 179.97438 * 21 20 19 23 23 C 1.38389 * 119.96802 * 179.97438 * 16 15 14 24 24 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 25 25 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 26 26 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 27 27 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 28 28 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 29 29 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 31 31 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 32 32 H 1.08003 * 119.84739 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.88325 * 180.25464 * 18 17 16 34 34 H 1.07993 * 120.03198 * 179.76273 * 19 18 17 35 35 H 1.08006 * 120.00153 * 359.97290 * 21 20 19 36 36 H 1.08002 * 120.11620 * 359.95172 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.8598 2.4169 -4.3674 10 1 2.8005 4.7380 -3.6667 11 1 4.9001 3.5247 -3.6680 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 8 2.3142 -3.5584 -0.0100 16 6 1.7948 -4.8143 -0.0151 17 6 0.4177 -4.9957 -0.0096 18 6 -0.1180 -6.2706 -0.0196 19 6 0.7116 -7.3726 -0.0244 20 6 2.0995 -7.2013 -0.0246 21 6 2.9889 -8.3738 -0.0303 22 8 4.1920 -8.2223 -0.0309 23 6 2.6384 -5.9113 -0.0204 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8900 -0.5138 27 1 1.6083 2.0285 0.5137 28 1 3.1499 1.1385 0.5139 29 1 4.0317 4.4431 -0.8505 30 1 0.7588 -2.5340 0.8844 31 1 0.7590 -2.5261 -0.8955 32 1 -0.2375 -4.1372 -0.0010 33 1 -1.1897 -6.4039 -0.0195 34 1 0.2897 -8.3667 -0.0284 35 1 2.5701 -9.3694 -0.0339 36 1 3.7093 -5.7713 -0.0213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069055870.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:27 Heat of formation + Delta-G solvation = -71.497541 kcal Electronic energy + Delta-G solvation = -20335.921387 eV Core-core repulsion = 16979.369585 eV Total energy + Delta-G solvation = -3356.551802 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.55195 -39.42152 -38.60829 -37.07449 -34.90635 -32.69801 -31.55779 -30.78273 -28.94454 -27.23230 -25.79041 -25.07972 -22.93006 -22.55647 -21.08029 -18.76158 -18.45405 -16.71818 -16.69330 -16.41018 -16.33605 -16.12521 -15.45209 -15.15533 -14.80038 -14.58573 -14.25695 -14.10376 -13.98040 -13.15987 -12.87424 -12.57142 -12.31190 -12.17608 -12.15829 -11.96028 -11.31495 -11.24038 -11.16225 -10.89185 -10.64493 -10.20155 -10.11728 -9.67124 -9.32483 -9.03702 -8.47860 -8.45937 -7.78000 -6.08696 -4.13877 0.34428 1.15945 2.18284 2.77733 3.20515 3.27980 3.36216 3.40233 3.53995 3.86410 4.10635 4.41428 4.47900 4.67430 4.71152 4.82941 4.94989 5.01667 5.10558 5.17776 5.26270 5.34234 5.49225 5.64638 5.78571 5.95051 6.03487 6.06343 6.07899 6.35963 6.90703 7.12312 7.23391 7.35435 7.43829 7.87187 8.16541 8.23854 8.81293 8.95675 9.51455 10.99571 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027409 B = 0.003334 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.331606 B = 8397.448007 C = 8861.409816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.598 5.598 3 C 0.246 3.754 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.505 3.495 13 O -0.516 6.516 14 C 0.041 3.959 15 O -0.284 6.284 16 C 0.124 3.876 17 C -0.181 4.181 18 C -0.093 4.093 19 C -0.114 4.114 20 C -0.156 4.156 21 C 0.383 3.617 22 O -0.454 6.454 23 C -0.092 4.092 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.264 0.736 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.745 -20.514 2.501 24.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.333 5.333 3 C 0.127 3.873 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.290 3.710 13 O -0.391 6.391 14 C -0.037 4.037 15 O -0.196 6.196 16 C 0.078 3.922 17 C -0.200 4.200 18 C -0.111 4.111 19 C -0.132 4.132 20 C -0.157 4.157 21 C 0.241 3.759 22 O -0.326 6.326 23 C -0.111 4.111 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.106 0.894 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.125 0.875 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.122 -20.161 2.547 23.166 hybrid contribution -0.435 0.575 -0.988 1.223 sum -11.557 -19.587 1.559 22.796 Atomic orbital electron populations 1.21713 0.81247 1.02821 1.00695 1.48098 1.06261 1.07261 1.71632 1.19363 0.92663 0.77459 0.97767 1.21458 1.36762 1.06397 0.92201 0.92334 1.24945 0.95222 0.96352 0.97578 1.69938 1.38232 1.14354 1.30733 0.86417 0.78191 0.78276 0.84398 1.19786 1.20916 1.20781 1.19684 0.88186 0.84217 0.78960 1.90735 1.13419 1.86625 1.48305 1.22726 0.92147 0.85960 1.02915 1.86246 1.34428 1.11112 1.87810 1.19044 0.91836 0.85177 0.96119 1.21583 0.93909 0.99136 1.05345 1.20901 1.00080 0.91568 0.98584 1.21231 0.91947 0.99364 1.00662 1.20732 0.95062 0.94796 1.05123 1.24088 0.88248 0.93222 0.70390 1.90561 1.18310 1.89766 1.34001 1.20735 1.00912 0.89290 1.00175 0.93349 0.90211 0.92702 0.94582 0.93628 0.92669 0.89541 0.89391 0.84849 0.85078 0.84958 0.87493 0.83922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 10.25 59.85 0.61 1.75 16 2 N -0.60 -12.36 2.86 -182.95 -0.52 -12.88 16 3 C 0.25 6.37 5.16 -5.20 -0.03 6.34 16 4 C -0.53 -14.94 9.39 -34.44 -0.32 -15.27 16 5 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.51 10.60 7.75 -10.98 -0.09 10.52 16 13 O -0.52 -13.60 16.08 -14.35 -0.23 -13.83 16 14 C 0.04 0.61 3.77 36.01 0.14 0.75 16 15 O -0.28 -4.79 9.67 -39.37 -0.38 -5.17 16 16 C 0.12 1.67 6.68 -39.28 -0.26 1.41 16 17 C -0.18 -1.81 9.04 -39.32 -0.36 -2.17 16 18 C -0.09 -0.72 10.02 -39.67 -0.40 -1.12 16 19 C -0.11 -0.83 9.79 -39.09 -0.38 -1.22 16 20 C -0.16 -1.53 5.87 -105.08 -0.62 -2.15 16 21 C 0.38 3.34 11.46 34.36 0.39 3.73 16 22 O -0.45 -6.03 17.17 5.58 0.10 -5.93 16 23 C -0.09 -1.20 9.54 -38.94 -0.37 -1.57 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 26 H 0.05 0.60 6.43 -51.93 -0.33 0.27 16 27 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 28 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.09 0.99 7.61 -51.93 -0.40 0.60 16 31 H 0.09 1.08 6.92 -51.93 -0.36 0.72 16 32 H 0.13 1.08 6.28 -52.48 -0.33 0.75 16 33 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 35 H 0.11 0.42 8.06 -52.48 -0.42 0.00 16 36 H 0.14 2.05 7.65 -52.49 -0.40 1.65 16 LS Contribution 320.96 15.07 4.84 4.84 Total: -1.00 -36.67 320.96 -6.54 -43.21 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: -4.28 Total: -3.96 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -1.78 Total: 2.65 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.21 Total: -38.63 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.52 Total: -24.93 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -36.67 -6.54 -43.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069055870.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.291 kcal (2) G-P(sol) polarization free energy of solvation -36.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds