Wall clock time and date at job start Mon Mar 30 2020 02:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47135 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47061 * 119.99902 * 8 6 4 11 11 H 1.48503 * 109.47075 * 240.00004 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 O 1.42899 * 109.46876 * 179.72354 * 14 12 2 16 16 C 1.35910 * 116.99557 * 179.97438 * 15 14 12 17 17 C 1.38895 * 119.97632 * 359.72216 * 16 15 14 18 18 C 1.38285 * 120.29637 * 179.76415 * 17 16 15 19 19 C 1.37936 * 120.23672 * 0.51385 * 18 17 16 20 20 C 1.39840 * 119.93644 * 359.74215 * 19 18 17 21 21 C 1.47171 * 120.14714 * 180.02562 * 20 19 18 22 22 O 1.21259 * 120.00181 * 179.97438 * 21 20 19 23 23 C 1.38389 * 119.96802 * 179.97438 * 16 15 14 24 24 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 25 25 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 26 26 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 27 27 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 28 28 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 29 29 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 31 31 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 32 32 H 1.08003 * 119.84739 * 359.97438 * 17 16 15 33 33 H 1.07998 * 119.88325 * 180.25464 * 18 17 16 34 34 H 1.07993 * 120.03198 * 179.76273 * 19 18 17 35 35 H 1.08006 * 120.00153 * 359.97290 * 21 20 19 36 36 H 1.08002 * 120.11620 * 359.95172 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.8598 2.4169 -4.3674 10 1 2.8005 4.7380 -3.6667 11 1 4.9001 3.5247 -3.6680 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 8 2.3142 -3.5584 -0.0100 16 6 1.7948 -4.8143 -0.0151 17 6 0.4177 -4.9957 -0.0096 18 6 -0.1180 -6.2706 -0.0196 19 6 0.7116 -7.3726 -0.0244 20 6 2.0995 -7.2013 -0.0246 21 6 2.9889 -8.3738 -0.0303 22 8 4.1920 -8.2223 -0.0309 23 6 2.6384 -5.9113 -0.0204 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3632 -0.8900 -0.5138 27 1 1.6083 2.0285 0.5137 28 1 3.1499 1.1385 0.5139 29 1 4.0317 4.4431 -0.8505 30 1 0.7588 -2.5340 0.8844 31 1 0.7590 -2.5261 -0.8955 32 1 -0.2375 -4.1372 -0.0010 33 1 -1.1897 -6.4039 -0.0195 34 1 0.2897 -8.3667 -0.0284 35 1 2.5701 -9.3694 -0.0339 36 1 3.7093 -5.7713 -0.0213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069055870.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:27 Heat of formation + Delta-G solvation = -97.355980 kcal Electronic energy + Delta-G solvation = -20337.042694 eV Core-core repulsion = 16979.369585 eV Total energy + Delta-G solvation = -3357.673108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.53308 -40.60822 -39.78090 -38.00874 -36.66581 -34.79426 -32.30251 -31.74777 -30.47114 -28.68649 -27.28604 -25.94284 -24.73471 -23.37499 -21.95138 -20.24852 -19.40887 -18.75436 -17.85938 -17.52932 -17.42107 -17.25189 -16.84780 -16.24872 -16.09109 -15.82733 -15.54032 -15.28903 -14.66601 -14.49730 -14.35093 -13.84456 -13.80360 -13.51887 -13.39521 -13.14952 -12.84023 -12.78199 -12.57334 -12.25260 -12.13545 -12.09960 -11.71177 -10.84154 -10.72799 -10.68274 -10.05782 -9.52851 -9.28961 -8.26429 -6.41333 -0.37477 0.41870 1.34171 1.37536 1.48162 1.50336 1.59605 1.66304 2.34843 2.65500 2.82373 3.03736 3.36810 3.48785 3.79300 3.91083 4.04833 4.08190 4.14877 4.28707 4.40170 4.44919 4.70843 4.71792 4.91280 4.92452 4.97277 5.17578 5.25438 5.30505 5.39172 5.49396 5.70339 5.77573 6.00695 6.30723 6.49100 6.61865 6.68900 7.21205 7.35542 8.81266 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.027409 B = 0.003334 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.331606 B = 8397.448007 C = 8861.409816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.602 5.602 3 C 0.258 3.742 4 C -0.546 4.546 5 H 0.055 0.945 6 C 0.006 3.994 7 N -0.928 5.928 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.266 1.266 11 H -0.284 1.284 12 C 0.491 3.509 13 O -0.590 6.590 14 C 0.057 3.943 15 O -0.331 6.331 16 C 0.090 3.910 17 C -0.176 4.176 18 C -0.087 4.087 19 C -0.089 4.089 20 C -0.169 4.169 21 C 0.391 3.609 22 O -0.512 6.512 23 C -0.131 4.131 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.033 0.967 28 H -0.005 1.005 29 H 0.268 0.732 30 H 0.128 0.872 31 H 0.123 0.877 32 H 0.158 0.842 33 H 0.174 0.826 34 H 0.183 0.817 35 H 0.173 0.827 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.153 -23.081 1.570 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.335 5.335 3 C 0.137 3.863 4 C -0.584 4.584 5 H 0.073 0.927 6 C -0.193 4.193 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.190 1.190 11 H -0.210 1.210 12 C 0.279 3.721 13 O -0.470 6.470 14 C -0.020 4.020 15 O -0.245 6.245 16 C 0.046 3.954 17 C -0.195 4.195 18 C -0.105 4.105 19 C -0.107 4.107 20 C -0.170 4.170 21 C 0.252 3.748 22 O -0.388 6.388 23 C -0.150 4.150 24 H 0.097 0.903 25 H 0.091 0.909 26 H 0.118 0.882 27 H 0.051 0.949 28 H 0.013 0.987 29 H 0.077 0.923 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.176 0.824 33 H 0.192 0.808 34 H 0.200 0.800 35 H 0.188 0.812 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.623 -22.750 1.623 27.646 hybrid contribution 0.842 1.271 -0.640 1.654 sum -14.781 -21.480 0.983 26.092 Atomic orbital electron populations 1.22110 0.76949 1.04711 1.03333 1.48096 1.08875 1.05589 1.70944 1.18825 0.91212 0.80034 0.96229 1.21743 1.37046 1.06606 0.93013 0.92696 1.25888 0.94801 0.96448 1.02122 1.70053 1.38826 1.14863 1.33045 0.85341 0.77818 0.78532 0.78952 1.19059 1.19042 1.21003 1.20869 0.87815 0.86319 0.77120 1.90690 1.16870 1.87910 1.51525 1.22639 0.90895 0.82167 1.06309 1.86170 1.36373 1.12816 1.89099 1.19270 0.93687 0.83489 0.98989 1.21917 0.92110 1.01436 1.04004 1.21476 1.02248 0.90390 0.96370 1.21814 0.90211 1.01821 0.96822 1.21079 0.96991 0.93662 1.05261 1.25003 0.87101 0.95006 0.67656 1.90560 1.20883 1.90471 1.36898 1.20758 0.99488 0.91566 1.03223 0.90260 0.90935 0.88233 0.94899 0.98688 0.92315 0.85399 0.85985 0.82429 0.80820 0.79999 0.81162 0.87831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.85 10.25 127.77 1.31 3.15 16 2 N -0.60 -25.18 2.86 -851.12 -2.43 -27.61 16 3 C 0.26 14.04 5.16 85.63 0.44 14.48 16 4 C -0.55 -31.78 9.39 25.60 0.24 -31.54 16 5 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 6 C 0.01 0.38 5.46 84.66 0.46 0.84 16 7 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 8 Si 0.97 45.43 29.54 68.60 2.03 47.45 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 C 0.49 21.23 7.75 87.66 0.68 21.91 16 13 O -0.59 -33.49 16.08 16.00 0.26 -33.24 16 14 C 0.06 1.63 3.77 71.24 0.27 1.90 16 15 O -0.33 -11.58 9.67 -73.50 -0.71 -12.29 16 16 C 0.09 2.42 6.68 22.46 0.15 2.57 16 17 C -0.18 -2.89 9.04 22.44 0.20 -2.68 16 18 C -0.09 -0.86 10.02 22.21 0.22 -0.64 16 19 C -0.09 -0.84 9.79 22.59 0.22 -0.62 16 20 C -0.17 -3.04 5.87 -20.16 -0.12 -3.16 16 21 C 0.39 6.16 11.46 70.17 0.80 6.96 16 22 O -0.51 -14.15 17.17 -2.97 -0.05 -14.21 16 23 C -0.13 -3.63 9.54 22.69 0.22 -3.41 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 26 H 0.10 1.73 6.43 -2.39 -0.02 1.71 16 27 H 0.03 1.78 8.07 -2.39 -0.02 1.76 16 28 H -0.01 -0.32 7.42 -2.38 -0.02 -0.34 16 29 H 0.27 15.29 8.31 -92.72 -0.77 14.52 16 30 H 0.13 2.50 7.61 -2.38 -0.02 2.48 16 31 H 0.12 2.57 6.92 -2.39 -0.02 2.55 16 32 H 0.16 1.70 6.28 -2.91 -0.02 1.68 16 33 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 34 H 0.18 -0.05 8.06 -2.91 -0.02 -0.07 16 35 H 0.17 0.51 8.06 -2.91 -0.02 0.48 16 36 H 0.10 3.51 7.65 -2.91 -0.02 3.49 16 Total: -1.00 -91.76 320.96 5.57 -86.19 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: 1.09 Total: 0.40 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 5.10 Total: 9.77 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.15 Total: -84.08 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -0.50 Total: -59.73 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -91.76 5.57 -86.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069055870.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.165 kcal (2) G-P(sol) polarization free energy of solvation -91.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds