Wall clock time and date at job start Mon Mar 30 2020 01:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21255 * 120.00032 * 2 1 4 4 C 1.47176 * 119.99956 * 179.97438 * 2 1 3 5 5 C 1.39879 * 120.14654 * 359.97438 * 4 2 1 6 6 C 1.37892 * 119.93476 * 180.02562 * 5 4 2 7 7 C 1.38328 * 120.24148 * 359.97438 * 6 5 4 8 8 C 1.38854 * 120.29051 * 0.02562 * 7 6 5 9 9 O 1.35915 * 119.96979 * 180.02562 * 8 7 6 10 10 C 1.42906 * 116.99958 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.46809 * 180.02562 * 10 9 8 12 12 O 1.21290 * 120.00699 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99751 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99874 * 359.97438 * 13 11 10 15 15 C 1.37102 * 120.00025 * 179.97438 * 13 11 10 16 16 H 1.07994 * 119.99749 * 24.40058 * 15 13 11 17 17 C 1.38949 * 119.99923 * 204.39201 * 15 13 11 18 18 N 1.31412 * 120.00301 * 12.66237 * 17 15 13 19 19 Si 1.86796 * 120.00063 * 192.65862 * 17 15 13 20 20 H 1.48501 * 109.46904 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47177 * 120.00247 * 19 17 15 22 22 H 1.48503 * 109.47487 * 240.00639 * 19 17 15 23 23 C 1.38422 * 120.06126 * 0.02562 * 8 7 6 24 24 H 1.08998 * 109.47378 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47445 * 300.00285 * 1 2 3 26 26 H 1.09003 * 109.46896 * 60.00043 * 1 2 3 27 27 H 1.07994 * 120.02893 * 359.97438 * 5 4 2 28 28 H 1.08004 * 119.87686 * 180.02562 * 6 5 4 29 29 H 1.07999 * 119.85492 * 180.02562 * 7 6 5 30 30 H 1.08995 * 109.47375 * 300.00327 * 10 9 8 31 31 H 1.09001 * 109.46832 * 60.00731 * 10 9 8 32 32 H 1.08998 * 109.47010 * 85.86505 * 14 13 11 33 33 H 1.09006 * 109.46867 * 205.86442 * 14 13 11 34 34 H 1.08999 * 109.47341 * 325.86273 * 14 13 11 35 35 H 0.96995 * 120.00265 * 179.97438 * 18 17 15 36 36 H 1.07999 * 120.12257 * 180.27351 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5466 -2.4878 0.0017 6 6 2.2404 -3.6794 0.0027 7 6 3.6237 -3.6801 0.0022 8 6 4.3247 -2.4815 0.0011 9 8 5.6838 -2.4898 0.0001 10 6 6.3248 -3.7671 0.0007 11 6 7.8199 -3.5787 0.0000 12 8 8.2905 -2.4608 -0.0014 13 7 8.6344 -4.6526 -0.0001 14 6 8.0661 -6.0029 0.0011 15 6 9.9946 -4.4812 -0.0012 16 1 10.4242 -3.5685 0.3843 17 6 10.8205 -5.4820 -0.4983 18 7 10.3069 -6.4752 -1.1889 19 14 12.6608 -5.4158 -0.1851 20 1 12.9839 -4.2054 0.6124 21 1 13.0794 -6.6278 0.5640 22 1 13.3821 -5.3616 -1.4820 23 6 3.6406 -1.2781 0.0011 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.4666 -2.4911 0.0025 28 1 1.7018 -4.6156 0.0031 29 1 4.1608 -4.6171 0.0026 30 1 6.0292 -4.3215 0.8913 31 1 6.0279 -4.3230 -0.8886 32 1 7.8561 -6.3096 -1.0236 33 1 8.7779 -6.6962 0.4492 34 1 7.1416 -6.0076 0.5785 35 1 10.8834 -7.1736 -1.5362 36 1 4.1848 -0.3453 -0.0042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069592666.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:31 Heat of formation + Delta-G solvation = -68.161388 kcal Electronic energy + Delta-G solvation = -20466.031495 eV Core-core repulsion = 17109.624359 eV Total energy + Delta-G solvation = -3356.407136 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.42832 -39.34520 -38.27932 -36.86388 -34.70800 -31.85728 -31.80792 -31.03544 -29.16377 -28.06647 -26.20001 -24.50331 -23.57392 -22.45335 -20.22807 -19.06631 -18.06647 -16.97756 -16.39967 -16.21258 -15.95603 -15.82927 -15.26258 -15.14867 -14.90818 -14.37000 -13.99193 -13.85190 -13.82061 -13.02571 -12.69812 -12.68539 -12.31613 -12.25381 -11.83132 -11.72566 -11.51977 -11.36387 -11.03736 -10.94295 -10.85880 -10.36246 -10.34553 -9.95567 -9.16426 -9.10499 -8.49688 -8.25451 -7.77672 -6.41428 -3.98112 0.49811 1.32581 2.26805 3.08961 3.10836 3.22941 3.31498 3.67148 3.73273 3.90137 4.13536 4.61844 4.70726 4.76544 4.85644 4.97347 5.01481 5.10625 5.12948 5.27850 5.38299 5.46112 5.51888 5.65362 5.69264 5.81142 6.12099 6.15707 6.21059 6.25662 6.55227 6.70197 7.05779 7.33464 7.46733 7.49760 8.04000 8.38796 9.08552 9.28340 9.83706 10.63807 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.043664 B = 0.003230 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.101054 B = 8666.745371 C = 9224.859626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.396 3.604 3 O -0.455 6.455 4 C -0.137 4.137 5 C -0.123 4.123 6 C -0.091 4.091 7 C -0.182 4.182 8 C 0.129 3.871 9 O -0.283 6.283 10 C 0.051 3.949 11 C 0.447 3.553 12 O -0.566 6.566 13 N -0.441 5.441 14 C 0.107 3.893 15 C -0.306 4.306 16 H 0.101 0.899 17 C 0.031 3.969 18 N -0.881 5.881 19 Si 0.929 3.071 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.095 4.095 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.024 0.976 35 H 0.268 0.732 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.511 0.317 2.245 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.274 3.726 3 O -0.331 6.331 4 C -0.138 4.138 5 C -0.141 4.141 6 C -0.110 4.110 7 C -0.201 4.201 8 C 0.082 3.918 9 O -0.194 6.194 10 C -0.028 4.028 11 C 0.233 3.767 12 O -0.449 6.449 13 N -0.162 5.162 14 C -0.037 4.037 15 C -0.433 4.433 16 H 0.118 0.882 17 C -0.172 4.172 18 N -0.521 5.521 19 Si 0.755 3.245 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.114 4.114 24 H 0.104 0.896 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.151 0.849 28 H 0.149 0.851 29 H 0.153 0.847 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.720 1.405 2.155 18.895 hybrid contribution 0.757 -0.770 -0.023 1.079 sum -17.963 0.635 2.132 18.100 Atomic orbital electron populations 1.22228 0.93633 1.04893 1.04911 1.22497 0.91643 0.87519 0.70990 1.90562 1.72101 1.34339 1.36053 1.20254 0.93308 0.95009 1.05269 1.21315 0.99905 0.91335 1.01527 1.20897 0.93331 0.98208 0.98517 1.21627 0.95576 0.97641 1.05283 1.19080 0.83542 0.93772 0.95378 1.86251 1.14741 1.31093 1.87363 1.22670 0.94306 0.83733 1.02098 1.19502 0.86076 0.86003 0.85088 1.90575 1.76250 1.23764 1.54264 1.43483 1.05893 1.03801 1.63046 1.21565 0.95882 0.85446 1.00780 1.19716 0.79490 1.04922 1.39183 0.88161 1.25377 1.00720 0.96187 0.94941 1.69986 1.36303 1.12625 1.33140 0.85814 0.81894 0.78433 0.78311 1.19099 1.20573 1.20633 1.20687 0.92710 0.97328 1.00669 0.89641 0.88771 0.88769 0.84899 0.85131 0.84714 0.90470 0.90133 0.92674 0.90202 0.95747 0.92143 0.83987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.30 10.19 36.01 0.37 -0.93 16 2 C 0.40 4.48 7.23 -30.68 -0.22 4.26 16 3 O -0.46 -6.91 17.09 5.58 0.10 -6.82 16 4 C -0.14 -1.66 5.87 -105.08 -0.62 -2.27 16 5 C -0.12 -1.14 9.45 -39.09 -0.37 -1.51 16 6 C -0.09 -0.89 10.02 -39.68 -0.40 -1.29 16 7 C -0.18 -2.27 9.04 -39.32 -0.36 -2.63 16 8 C 0.13 2.04 6.68 -39.29 -0.26 1.78 16 9 O -0.28 -5.57 9.67 -39.38 -0.38 -5.95 16 10 C 0.05 0.94 3.82 36.00 0.14 1.08 16 11 C 0.45 11.10 7.70 -10.99 -0.08 11.02 16 12 O -0.57 -16.49 16.21 -14.36 -0.23 -16.73 16 13 N -0.44 -11.18 3.01 -122.19 -0.37 -11.55 16 14 C 0.11 2.26 8.44 59.85 0.51 2.76 16 15 C -0.31 -8.46 9.24 -14.93 -0.14 -8.60 16 16 H 0.10 2.92 7.45 -52.49 -0.39 2.53 16 17 C 0.03 0.81 5.04 -17.47 -0.09 0.72 16 18 N -0.88 -22.96 10.83 55.50 0.60 -22.36 16 19 Si 0.93 20.48 29.57 -169.99 -5.03 15.46 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.10 -1.44 9.54 -38.94 -0.37 -1.81 16 24 H 0.08 0.37 5.60 -51.93 -0.29 0.08 16 25 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.13 0.76 5.92 -52.49 -0.31 0.45 16 28 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 29 H 0.14 1.49 6.28 -52.49 -0.33 1.16 16 30 H 0.08 1.22 6.92 -51.93 -0.36 0.86 16 31 H 0.08 1.33 7.62 -51.93 -0.40 0.93 16 32 H 0.05 1.18 7.83 -51.93 -0.41 0.78 16 33 H 0.08 1.79 6.80 -51.93 -0.35 1.43 16 34 H 0.02 0.41 6.61 -51.93 -0.34 0.06 16 35 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 36 H 0.14 2.31 7.65 -52.49 -0.40 1.91 16 LS Contribution 311.29 15.07 4.69 4.69 Total: -1.00 -33.95 311.29 -6.50 -40.45 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -3.98 Total: 0.23 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -1.89 Total: 2.57 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.23 Total: -33.91 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.52 Total: -29.49 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.95 -6.50 -40.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069592666.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.714 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds