Wall clock time and date at job start Mon Mar 30 2020 01:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21255 * 120.00032 * 2 1 4 4 C 1.47176 * 119.99956 * 179.97438 * 2 1 3 5 5 C 1.39879 * 120.14654 * 359.97438 * 4 2 1 6 6 C 1.37892 * 119.93476 * 180.02562 * 5 4 2 7 7 C 1.38328 * 120.24148 * 359.97438 * 6 5 4 8 8 C 1.38854 * 120.29051 * 0.02562 * 7 6 5 9 9 O 1.35915 * 119.96979 * 180.02562 * 8 7 6 10 10 C 1.42906 * 116.99958 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.46809 * 180.02562 * 10 9 8 12 12 O 1.21290 * 120.00699 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99751 * 180.02562 * 11 10 9 14 14 C 1.46505 * 119.99874 * 359.97438 * 13 11 10 15 15 C 1.37102 * 120.00025 * 179.97438 * 13 11 10 16 16 H 1.07994 * 119.99749 * 24.40058 * 15 13 11 17 17 C 1.38949 * 119.99923 * 204.39201 * 15 13 11 18 18 N 1.31412 * 120.00301 * 12.66237 * 17 15 13 19 19 Si 1.86796 * 120.00063 * 192.65862 * 17 15 13 20 20 H 1.48501 * 109.46904 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47177 * 120.00247 * 19 17 15 22 22 H 1.48503 * 109.47487 * 240.00639 * 19 17 15 23 23 C 1.38422 * 120.06126 * 0.02562 * 8 7 6 24 24 H 1.08998 * 109.47378 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47445 * 300.00285 * 1 2 3 26 26 H 1.09003 * 109.46896 * 60.00043 * 1 2 3 27 27 H 1.07994 * 120.02893 * 359.97438 * 5 4 2 28 28 H 1.08004 * 119.87686 * 180.02562 * 6 5 4 29 29 H 1.07999 * 119.85492 * 180.02562 * 7 6 5 30 30 H 1.08995 * 109.47375 * 300.00327 * 10 9 8 31 31 H 1.09001 * 109.46832 * 60.00731 * 10 9 8 32 32 H 1.08998 * 109.47010 * 85.86505 * 14 13 11 33 33 H 1.09006 * 109.46867 * 205.86442 * 14 13 11 34 34 H 1.08999 * 109.47341 * 325.86273 * 14 13 11 35 35 H 0.96995 * 120.00265 * 179.97438 * 18 17 15 36 36 H 1.07999 * 120.12257 * 180.27351 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5466 -2.4878 0.0017 6 6 2.2404 -3.6794 0.0027 7 6 3.6237 -3.6801 0.0022 8 6 4.3247 -2.4815 0.0011 9 8 5.6838 -2.4898 0.0001 10 6 6.3248 -3.7671 0.0007 11 6 7.8199 -3.5787 0.0000 12 8 8.2905 -2.4608 -0.0014 13 7 8.6344 -4.6526 -0.0001 14 6 8.0661 -6.0029 0.0011 15 6 9.9946 -4.4812 -0.0012 16 1 10.4242 -3.5685 0.3843 17 6 10.8205 -5.4820 -0.4983 18 7 10.3069 -6.4752 -1.1889 19 14 12.6608 -5.4158 -0.1851 20 1 12.9839 -4.2054 0.6124 21 1 13.0794 -6.6278 0.5640 22 1 13.3821 -5.3616 -1.4820 23 6 3.6406 -1.2781 0.0011 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.4666 -2.4911 0.0025 28 1 1.7018 -4.6156 0.0031 29 1 4.1608 -4.6171 0.0026 30 1 6.0292 -4.3215 0.8913 31 1 6.0279 -4.3230 -0.8886 32 1 7.8561 -6.3096 -1.0236 33 1 8.7779 -6.6962 0.4492 34 1 7.1416 -6.0076 0.5785 35 1 10.8834 -7.1736 -1.5362 36 1 4.1848 -0.3453 -0.0042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069592666.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:31 Heat of formation + Delta-G solvation = -90.518001 kcal Electronic energy + Delta-G solvation = -20467.000950 eV Core-core repulsion = 17109.624359 eV Total energy + Delta-G solvation = -3357.376591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.52972 -40.63699 -39.83633 -38.03909 -36.70062 -33.80074 -32.72605 -32.05236 -30.10457 -29.46114 -27.96447 -26.23764 -24.67225 -23.40271 -21.52285 -20.54390 -19.20306 -18.91409 -17.85850 -17.42278 -17.34448 -16.92885 -16.66302 -16.19947 -16.06447 -15.97678 -15.53682 -15.44074 -14.70078 -14.47272 -13.94816 -13.74914 -13.45834 -13.32308 -13.26778 -13.18126 -12.99229 -12.68799 -12.61120 -12.44154 -12.13739 -12.05674 -12.03130 -11.06875 -10.84633 -10.47622 -10.09492 -9.76410 -9.30884 -8.41470 -6.07338 -0.42282 0.38808 1.32901 1.38955 1.39559 1.52573 1.80570 1.87265 2.31227 2.76391 2.99468 3.01061 3.22935 3.68318 3.85549 3.93762 3.99476 4.07648 4.14723 4.17968 4.33539 4.48409 4.58529 4.69144 4.79583 4.89529 4.98014 5.08711 5.28093 5.28239 5.32376 5.39614 5.40022 5.69007 6.00048 6.29279 6.45553 6.50638 7.08266 7.32407 7.89006 8.61820 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.043664 B = 0.003230 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.101054 B = 8666.745371 C = 9224.859626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.393 3.607 3 O -0.510 6.510 4 C -0.150 4.150 5 C -0.096 4.096 6 C -0.081 4.081 7 C -0.179 4.179 8 C 0.093 3.907 9 O -0.327 6.327 10 C 0.068 3.932 11 C 0.429 3.571 12 O -0.627 6.627 13 N -0.452 5.452 14 C 0.112 3.888 15 C -0.348 4.348 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.890 5.890 19 Si 0.991 3.009 20 H -0.277 1.277 21 H -0.260 1.260 22 H -0.275 1.275 23 C -0.129 4.129 24 H 0.118 0.882 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.184 0.816 28 H 0.177 0.823 29 H 0.153 0.847 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.277 0.723 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.930 -2.611 2.336 23.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.274 3.726 3 O -0.389 6.389 4 C -0.151 4.151 5 C -0.113 4.113 6 C -0.099 4.099 7 C -0.198 4.198 8 C 0.048 3.952 9 O -0.240 6.240 10 C -0.010 4.010 11 C 0.218 3.782 12 O -0.514 6.514 13 N -0.172 5.172 14 C -0.031 4.031 15 C -0.476 4.476 16 H 0.086 0.914 17 C -0.200 4.200 18 N -0.528 5.528 19 Si 0.814 3.186 20 H -0.202 1.202 21 H -0.184 1.184 22 H -0.200 1.200 23 C -0.148 4.148 24 H 0.136 0.864 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.201 0.799 28 H 0.195 0.805 29 H 0.170 0.830 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -22.186 -1.591 2.241 22.356 hybrid contribution 1.704 0.118 -0.078 1.710 sum -20.483 -1.473 2.163 20.649 Atomic orbital electron populations 1.22275 0.88918 1.07394 1.06013 1.23327 0.94026 0.86339 0.68861 1.90552 1.73627 1.35954 1.38778 1.20573 0.91998 0.97100 1.05400 1.21893 1.02217 0.89630 0.97596 1.21471 0.92144 1.00231 0.96041 1.21920 0.97087 0.96593 1.04187 1.19306 0.81991 0.95418 0.98461 1.86171 1.17406 1.31666 1.88789 1.22448 0.89608 0.84195 1.04770 1.20587 0.88928 0.84996 0.83682 1.90521 1.78085 1.26076 1.56764 1.43761 1.05481 1.05566 1.62413 1.21622 0.97312 0.82841 1.01285 1.19624 0.81481 1.04862 1.41655 0.91432 1.26090 1.04560 0.95327 0.93999 1.70032 1.37827 1.12592 1.32329 0.84918 0.76744 0.78605 0.78300 1.20152 1.18438 1.20018 1.20677 0.94550 0.96156 1.03452 0.86401 0.87493 0.87547 0.79910 0.80518 0.82961 0.87006 0.87576 0.93045 0.91759 0.90729 0.91329 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.75 10.19 71.24 0.73 -1.03 16 2 C 0.39 8.60 7.23 28.04 0.20 8.80 16 3 O -0.51 -16.38 17.09 -2.95 -0.05 -16.43 16 4 C -0.15 -3.44 5.87 -20.16 -0.12 -3.56 16 5 C -0.10 -1.32 9.45 22.59 0.21 -1.11 16 6 C -0.08 -1.15 10.02 22.21 0.22 -0.93 16 7 C -0.18 -3.95 9.04 22.44 0.20 -3.75 16 8 C 0.09 3.00 6.68 22.46 0.15 3.15 16 9 O -0.33 -13.50 9.67 -73.55 -0.71 -14.21 16 10 C 0.07 2.51 3.82 71.24 0.27 2.78 16 11 C 0.43 22.17 7.70 87.66 0.68 22.84 16 12 O -0.63 -39.21 16.21 15.97 0.26 -38.95 16 13 N -0.45 -23.47 3.01 -658.88 -1.98 -25.46 16 14 C 0.11 4.61 8.44 127.77 1.08 5.69 16 15 C -0.35 -20.10 9.24 84.04 0.78 -19.32 16 16 H 0.07 4.24 7.45 -2.91 -0.02 4.21 16 17 C 0.00 0.16 5.04 84.93 0.43 0.58 16 18 N -0.89 -45.98 10.83 21.66 0.23 -45.74 16 19 Si 0.99 42.30 29.57 68.60 2.03 44.32 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 23 C -0.13 -4.16 9.54 22.68 0.22 -3.95 16 24 H 0.12 0.27 5.60 -2.39 -0.01 0.26 16 25 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.18 0.69 5.92 -2.91 -0.02 0.67 16 28 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 29 H 0.15 2.73 6.28 -2.91 -0.02 2.71 16 30 H 0.11 3.28 6.92 -2.39 -0.02 3.26 16 31 H 0.11 3.32 7.62 -2.39 -0.02 3.31 16 32 H 0.05 2.14 7.83 -2.39 -0.02 2.12 16 33 H 0.06 2.83 6.80 -2.38 -0.02 2.81 16 34 H 0.07 2.28 6.61 -2.39 -0.02 2.26 16 35 H 0.28 13.26 8.31 -92.71 -0.77 12.49 16 36 H 0.11 4.01 7.65 -2.91 -0.02 3.98 16 Total: -1.00 -83.26 311.29 5.93 -77.33 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: 1.11 Total: 8.93 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 5.05 Total: 10.21 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.75 Total: -71.20 kcal Atomic # 8 Polarization: -69.09 SS G_CDS: -0.50 Total: -69.59 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -83.26 5.93 -77.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069592666.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.191 kcal (2) G-P(sol) polarization free energy of solvation -83.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds