Wall clock time and date at job start Mon Mar 30 2020 01:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47104 * 2 1 4 4 C 1.36932 * 119.99761 * 275.24317 * 3 2 1 5 5 H 1.08008 * 119.99596 * 146.58206 * 4 3 2 6 6 C 1.38813 * 120.00702 * 326.58394 * 4 3 2 7 7 N 1.31622 * 119.99257 * 336.12845 * 6 4 3 8 8 Si 1.86796 * 120.00431 * 156.12277 * 6 4 3 9 9 H 1.48505 * 109.46762 * 90.00056 * 8 6 4 10 10 H 1.48491 * 109.47299 * 210.00168 * 8 6 4 11 11 H 1.48502 * 109.47134 * 330.00564 * 8 6 4 12 12 S 1.65603 * 119.99924 * 95.25021 * 3 2 1 13 13 O 1.42093 * 104.27575 * 153.92624 * 12 3 2 14 14 O 1.42096 * 104.27738 * 26.06520 * 12 3 2 15 15 C 1.81405 * 104.44532 * 269.99688 * 12 3 2 16 16 C 1.53001 * 109.46930 * 180.02562 * 15 12 3 17 17 C 1.53170 * 109.54598 * 294.55715 * 16 15 12 18 18 C 1.53090 * 109.16814 * 183.15121 * 17 16 15 19 19 O 1.42910 * 109.41160 * 57.60420 * 18 17 16 20 20 C 1.42898 * 114.10048 * 298.84696 * 19 18 17 21 21 C 1.53086 * 109.41663 * 61.15636 * 20 19 18 22 22 H 1.09004 * 109.47428 * 300.00212 * 1 2 3 23 23 H 1.08994 * 109.47337 * 60.00204 * 1 2 3 24 24 H 1.08999 * 109.47338 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46876 * 239.99618 * 2 1 3 26 26 H 1.09005 * 109.46932 * 120.00051 * 2 1 3 27 27 H 0.97006 * 119.99531 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47128 * 59.99988 * 15 12 3 29 29 H 1.09003 * 109.47362 * 300.00013 * 15 12 3 30 30 H 1.09001 * 109.61566 * 54.77821 * 16 15 12 31 31 H 1.09005 * 109.52282 * 303.06082 * 17 16 15 32 32 H 1.08997 * 109.52598 * 63.24382 * 17 16 15 33 33 H 1.08998 * 109.47837 * 297.62893 * 18 17 16 34 34 H 1.08996 * 109.48398 * 177.58769 * 18 17 16 35 35 H 1.09006 * 109.47835 * 301.17391 * 20 19 18 36 36 H 1.09001 * 109.48984 * 181.14670 * 20 19 18 37 37 H 1.09001 * 109.52794 * 182.48576 * 21 20 19 38 38 H 1.08997 * 109.52390 * 62.30073 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1443 2.0628 -1.1809 5 1 1.9694 3.1282 -1.2108 6 6 2.4969 1.3846 -2.3397 7 7 3.1519 0.2456 -2.2620 8 14 2.0416 2.0883 -4.0091 9 1 3.1354 2.9706 -4.4892 10 1 1.8400 0.9791 -4.9755 11 1 0.7877 2.8747 -3.8895 12 16 2.4180 2.1181 1.4282 13 8 3.3746 3.1019 1.0591 14 8 2.7670 1.0443 2.2909 15 6 0.8780 2.9026 1.9791 16 6 1.1203 3.6259 3.3055 17 6 1.4530 2.6014 4.3944 18 6 1.6162 3.3259 5.7332 19 8 0.4174 4.0432 6.0342 20 6 0.0817 5.0475 5.0746 21 6 -0.1431 4.3921 3.7095 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.3980 -0.2286 -3.0717 28 1 0.1106 2.1407 2.1152 29 1 0.5476 3.6212 1.2290 30 1 1.9504 4.3237 3.1955 31 1 0.6444 1.8743 4.4699 32 1 2.3816 2.0897 4.1417 33 1 2.4510 4.0238 5.6693 34 1 1.8108 2.5969 6.5197 35 1 0.8966 5.7679 5.0023 36 1 -0.8289 5.5588 5.3868 37 1 -0.3559 5.1610 2.9668 38 1 -0.9839 3.7014 3.7711 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080647033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:51 Heat of formation + Delta-G solvation = -122.700997 kcal Electronic energy + Delta-G solvation = -21103.927043 eV Core-core repulsion = 17880.598844 eV Total energy + Delta-G solvation = -3223.328199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.41765 -36.07165 -35.84185 -35.03067 -34.68764 -31.65017 -31.15148 -29.21805 -28.53797 -24.58322 -23.64465 -23.29229 -21.53764 -20.12867 -18.40423 -17.23020 -16.43373 -16.14442 -15.97484 -15.75384 -15.12506 -14.80212 -14.49776 -14.26758 -13.60034 -13.48543 -12.91962 -12.87263 -12.47614 -12.27205 -12.05985 -11.91756 -11.43037 -11.27480 -11.17840 -11.09457 -10.97399 -10.92149 -10.83893 -10.65981 -10.41872 -10.36934 -10.14874 -9.91171 -9.77051 -9.48866 -8.97641 -7.67266 -6.21744 -3.90445 1.28986 3.21365 3.28592 3.31106 3.80194 3.90886 4.35610 4.56526 4.61969 4.71960 4.85024 4.95057 5.09096 5.12155 5.17661 5.30230 5.44193 5.53669 5.60426 5.62221 5.77833 5.84455 5.95977 6.05240 6.06791 6.18481 6.23946 6.30333 6.36927 6.59450 6.91707 7.11402 7.30073 7.44615 7.83131 8.45132 9.05474 9.42216 10.80422 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030656 B = 0.005480 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.146605 B = 5108.474133 C = 5282.199160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 N -0.846 5.846 4 C -0.291 4.291 5 H 0.089 0.911 6 C 0.038 3.962 7 N -0.859 5.859 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.271 1.271 12 S 2.562 3.438 13 O -0.967 6.967 14 O -0.990 6.990 15 C -0.628 4.628 16 C -0.077 4.077 17 C -0.179 4.179 18 C 0.063 3.937 19 O -0.385 6.385 20 C 0.059 3.941 21 C -0.143 4.143 22 H 0.033 0.967 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.115 0.885 26 H 0.060 0.940 27 H 0.266 0.734 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.076 0.924 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.326 4.886 9.323 12.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.020 4.020 3 N -0.678 5.678 4 C -0.426 4.426 5 H 0.107 0.893 6 C -0.168 4.168 7 N -0.499 5.499 8 Si 0.738 3.262 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.196 1.196 12 S 2.661 3.339 13 O -0.957 6.957 14 O -0.979 6.979 15 C -0.754 4.754 16 C -0.097 4.097 17 C -0.217 4.217 18 C -0.014 4.014 19 O -0.304 6.304 20 C -0.018 4.018 21 C -0.181 4.181 22 H 0.052 0.948 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.133 0.867 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.095 0.905 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.512 4.738 9.898 12.760 hybrid contribution -0.785 0.472 -1.336 1.619 sum -7.296 5.210 8.562 12.397 Atomic orbital electron populations 1.22233 0.99020 1.00115 1.00937 1.21352 0.91252 0.84506 1.04909 1.52588 1.77116 1.20508 1.17548 1.18992 1.45369 0.93787 0.84415 0.89349 1.25268 0.95163 0.96870 0.99545 1.69987 1.34028 1.16878 1.28985 0.86195 0.79185 0.78615 0.82195 1.20352 1.20844 1.19561 1.06998 0.76428 0.75165 0.75298 1.93468 1.56492 1.63897 1.81857 1.93419 1.82059 1.53064 1.69390 1.30829 1.26181 1.12787 1.05614 1.20881 0.99255 0.97186 0.92338 1.22680 1.04929 0.98738 0.95350 1.22588 0.86829 0.95171 0.96814 1.87902 1.43535 1.51227 1.47748 1.22613 1.00665 0.90037 0.88519 1.22210 0.97988 1.00441 0.97498 0.94753 0.92208 0.93332 0.86741 0.92149 0.92400 0.85804 0.85420 0.90144 0.89992 0.88759 0.92970 0.88424 0.93087 0.88857 0.90522 0.90679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 10.21 37.16 0.38 -2.61 16 2 C 0.11 2.40 5.98 -4.04 -0.02 2.38 16 3 N -0.85 -20.40 2.78 -59.91 -0.17 -20.56 16 4 C -0.29 -7.54 8.78 -15.06 -0.13 -7.67 16 5 H 0.09 2.21 7.94 -52.48 -0.42 1.79 16 6 C 0.04 0.99 4.98 -17.43 -0.09 0.90 16 7 N -0.86 -23.32 11.28 55.49 0.63 -22.69 16 8 Si 0.91 19.94 29.62 -169.99 -5.03 14.90 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 12 S 2.56 56.39 5.05 -107.50 -0.54 55.85 16 13 O -0.97 -24.69 17.22 -57.54 -0.99 -25.68 16 14 O -0.99 -22.95 14.37 -57.54 -0.83 -23.78 16 15 C -0.63 -10.27 5.62 37.16 0.21 -10.06 16 16 C -0.08 -1.12 2.27 -90.44 -0.21 -1.33 16 17 C -0.18 -2.60 5.02 -26.60 -0.13 -2.73 16 18 C 0.06 0.78 6.84 37.20 0.25 1.03 16 19 O -0.39 -5.02 10.77 -35.23 -0.38 -5.40 16 20 C 0.06 0.64 6.84 37.20 0.25 0.90 16 21 C -0.14 -1.70 5.42 -26.59 -0.14 -1.85 16 22 H 0.03 0.55 6.98 -51.93 -0.36 0.19 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.12 2.85 5.31 -51.93 -0.28 2.57 16 26 H 0.06 1.33 6.81 -51.93 -0.35 0.98 16 27 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.12 1.84 6.98 -51.93 -0.36 1.48 16 29 H 0.13 1.95 8.14 -51.92 -0.42 1.53 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.52 5.85 -51.93 -0.30 1.22 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 312.10 15.07 4.70 4.70 Total: -1.00 -31.47 312.10 -8.10 -39.57 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.86 Total: 4.13 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 0.37 Total: -21.03 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.46 Total: -43.25 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -2.20 Total: -54.87 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.90 kcal Atomic # 16 Polarization: 56.39 SS G_CDS: -0.54 Total: 55.85 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.47 -8.10 -39.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080647033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.128 kcal (2) G-P(sol) polarization free energy of solvation -31.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds