Wall clock time and date at job start Mon Mar 30 2020 01:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47104 * 2 1 4 4 C 1.36932 * 119.99761 * 275.24317 * 3 2 1 5 5 H 1.08008 * 119.99596 * 146.58206 * 4 3 2 6 6 C 1.38813 * 120.00702 * 326.58394 * 4 3 2 7 7 N 1.31622 * 119.99257 * 336.12845 * 6 4 3 8 8 Si 1.86796 * 120.00431 * 156.12277 * 6 4 3 9 9 H 1.48505 * 109.46762 * 90.00056 * 8 6 4 10 10 H 1.48491 * 109.47299 * 210.00168 * 8 6 4 11 11 H 1.48502 * 109.47134 * 330.00564 * 8 6 4 12 12 S 1.65603 * 119.99924 * 95.25021 * 3 2 1 13 13 O 1.42093 * 104.27575 * 153.92624 * 12 3 2 14 14 O 1.42096 * 104.27738 * 26.06520 * 12 3 2 15 15 C 1.81405 * 104.44532 * 269.99688 * 12 3 2 16 16 C 1.53001 * 109.46930 * 180.02562 * 15 12 3 17 17 C 1.53170 * 109.54598 * 294.55715 * 16 15 12 18 18 C 1.53090 * 109.16814 * 183.15121 * 17 16 15 19 19 O 1.42910 * 109.41160 * 57.60420 * 18 17 16 20 20 C 1.42898 * 114.10048 * 298.84696 * 19 18 17 21 21 C 1.53086 * 109.41663 * 61.15636 * 20 19 18 22 22 H 1.09004 * 109.47428 * 300.00212 * 1 2 3 23 23 H 1.08994 * 109.47337 * 60.00204 * 1 2 3 24 24 H 1.08999 * 109.47338 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46876 * 239.99618 * 2 1 3 26 26 H 1.09005 * 109.46932 * 120.00051 * 2 1 3 27 27 H 0.97006 * 119.99531 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47128 * 59.99988 * 15 12 3 29 29 H 1.09003 * 109.47362 * 300.00013 * 15 12 3 30 30 H 1.09001 * 109.61566 * 54.77821 * 16 15 12 31 31 H 1.09005 * 109.52282 * 303.06082 * 17 16 15 32 32 H 1.08997 * 109.52598 * 63.24382 * 17 16 15 33 33 H 1.08998 * 109.47837 * 297.62893 * 18 17 16 34 34 H 1.08996 * 109.48398 * 177.58769 * 18 17 16 35 35 H 1.09006 * 109.47835 * 301.17391 * 20 19 18 36 36 H 1.09001 * 109.48984 * 181.14670 * 20 19 18 37 37 H 1.09001 * 109.52794 * 182.48576 * 21 20 19 38 38 H 1.08997 * 109.52390 * 62.30073 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1443 2.0628 -1.1809 5 1 1.9694 3.1282 -1.2108 6 6 2.4969 1.3846 -2.3397 7 7 3.1519 0.2456 -2.2620 8 14 2.0416 2.0883 -4.0091 9 1 3.1354 2.9706 -4.4892 10 1 1.8400 0.9791 -4.9755 11 1 0.7877 2.8747 -3.8895 12 16 2.4180 2.1181 1.4282 13 8 3.3746 3.1019 1.0591 14 8 2.7670 1.0443 2.2909 15 6 0.8780 2.9026 1.9791 16 6 1.1203 3.6259 3.3055 17 6 1.4530 2.6014 4.3944 18 6 1.6162 3.3259 5.7332 19 8 0.4174 4.0432 6.0342 20 6 0.0817 5.0475 5.0746 21 6 -0.1431 4.3921 3.7095 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.3980 -0.2286 -3.0717 28 1 0.1106 2.1407 2.1152 29 1 0.5476 3.6212 1.2290 30 1 1.9504 4.3237 3.1955 31 1 0.6444 1.8743 4.4699 32 1 2.3816 2.0897 4.1417 33 1 2.4510 4.0238 5.6693 34 1 1.8108 2.5969 6.5197 35 1 0.8966 5.7679 5.0023 36 1 -0.8289 5.5588 5.3868 37 1 -0.3559 5.1610 2.9668 38 1 -0.9839 3.7014 3.7711 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080647033.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:50 Heat of formation + Delta-G solvation = -144.946216 kcal Electronic energy + Delta-G solvation = -21104.891668 eV Core-core repulsion = 17880.598844 eV Total energy + Delta-G solvation = -3224.292824 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.40142 -37.89677 -37.65884 -36.68395 -35.99449 -33.53772 -32.08826 -30.91567 -29.75456 -26.46849 -24.60521 -24.44389 -23.18354 -21.20014 -20.21493 -18.99763 -18.17211 -17.44127 -17.14412 -16.95459 -16.75691 -16.24777 -15.81398 -15.58636 -15.21739 -14.75123 -14.44560 -14.18947 -13.99923 -13.66794 -13.51645 -13.19405 -13.00568 -12.90566 -12.78360 -12.61320 -12.59827 -12.31093 -12.25221 -12.12106 -12.01822 -11.92652 -11.52714 -11.39467 -11.19486 -10.83770 -10.49442 -9.54948 -8.14049 -5.88864 -0.39556 1.48604 1.50003 1.61235 2.16453 2.56260 2.92227 2.98300 3.23752 3.36110 3.51383 3.64831 3.73800 4.01191 4.16659 4.23602 4.35176 4.44588 4.46104 4.56134 4.67152 4.73440 4.75181 4.76674 4.78972 4.86579 5.01399 5.07531 5.08914 5.25647 5.31705 5.51587 5.64625 5.99666 6.21506 6.52847 7.13860 7.49100 8.87919 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030656 B = 0.005480 C = 0.005300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.146605 B = 5108.474133 C = 5282.199160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.100 3.900 3 N -0.863 5.863 4 C -0.311 4.311 5 H 0.091 0.909 6 C -0.010 4.010 7 N -0.898 5.898 8 Si 0.974 3.026 9 H -0.282 1.282 10 H -0.280 1.280 11 H -0.255 1.255 12 S 2.556 3.444 13 O -1.013 7.013 14 O -1.012 7.012 15 C -0.592 4.592 16 C -0.085 4.085 17 C -0.184 4.184 18 C 0.063 3.937 19 O -0.396 6.396 20 C 0.053 3.947 21 C -0.137 4.137 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.054 0.946 27 H 0.266 0.734 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.059 0.941 36 H 0.119 0.881 37 H 0.094 0.906 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.865 6.327 10.108 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.027 4.027 3 N -0.694 5.694 4 C -0.445 4.445 5 H 0.109 0.891 6 C -0.213 4.213 7 N -0.539 5.539 8 Si 0.798 3.202 9 H -0.208 1.208 10 H -0.206 1.206 11 H -0.178 1.178 12 S 2.661 3.339 13 O -1.004 7.004 14 O -1.002 7.002 15 C -0.724 4.724 16 C -0.105 4.105 17 C -0.222 4.222 18 C -0.013 4.013 19 O -0.315 6.315 20 C -0.024 4.024 21 C -0.176 4.176 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.106 0.894 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.166 0.834 29 H 0.165 0.835 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.129 0.871 35 H 0.077 0.923 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.009 6.144 10.640 15.236 hybrid contribution -0.004 0.053 -1.425 1.426 sum -9.013 6.197 9.216 14.303 Atomic orbital electron populations 1.22118 0.95490 1.01973 1.01738 1.21362 0.94212 0.83878 1.03263 1.52707 1.77779 1.21049 1.17837 1.19259 1.45599 0.94084 0.85525 0.89106 1.26113 0.94989 0.97243 1.02926 1.70113 1.35542 1.18470 1.29771 0.85247 0.79193 0.77927 0.77875 1.20812 1.20580 1.17828 1.06669 0.78103 0.74603 0.74536 1.93412 1.59964 1.64432 1.82554 1.93393 1.83609 1.54130 1.69051 1.30465 1.21451 1.13393 1.07139 1.21049 1.01054 0.97350 0.91062 1.22705 1.03844 0.98982 0.96669 1.22620 0.87134 0.95578 0.96015 1.87896 1.43512 1.51673 1.48450 1.22832 1.02194 0.89715 0.87637 1.22217 0.96145 1.00692 0.98553 0.92452 0.92769 0.91008 0.89436 0.92807 0.92478 0.83443 0.83479 0.90453 0.89609 0.91154 0.92297 0.87071 0.92316 0.86357 0.88718 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 10.21 71.98 0.73 -4.64 16 2 C 0.10 4.53 5.98 86.38 0.52 5.05 16 3 N -0.86 -41.95 2.78 -343.45 -0.95 -42.91 16 4 C -0.31 -16.27 8.78 84.03 0.74 -15.53 16 5 H 0.09 4.56 7.94 -2.91 -0.02 4.53 16 6 C -0.01 -0.52 4.98 84.86 0.42 -0.09 16 7 N -0.90 -50.27 11.28 21.65 0.24 -50.02 16 8 Si 0.97 41.04 29.62 68.60 2.03 43.07 16 9 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 12 S 2.56 112.97 5.05 -56.49 -0.29 112.69 16 13 O -1.01 -52.91 17.22 -127.65 -2.20 -55.11 16 14 O -1.01 -47.82 14.37 -127.65 -1.83 -49.65 16 15 C -0.59 -17.85 5.62 71.98 0.40 -17.45 16 16 C -0.09 -2.27 2.27 -10.68 -0.02 -2.29 16 17 C -0.18 -5.03 5.02 30.68 0.15 -4.88 16 18 C 0.06 1.44 6.84 72.01 0.49 1.93 16 19 O -0.40 -9.12 10.77 -148.98 -1.60 -10.72 16 20 C 0.05 0.96 6.84 72.01 0.49 1.45 16 21 C -0.14 -2.72 5.42 30.68 0.17 -2.55 16 22 H 0.06 1.69 6.98 -2.39 -0.02 1.68 16 23 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.09 4.50 5.31 -2.39 -0.01 4.49 16 26 H 0.05 2.44 6.81 -2.38 -0.02 2.42 16 27 H 0.27 14.00 8.31 -92.70 -0.77 13.23 16 28 H 0.15 3.84 6.98 -2.39 -0.02 3.82 16 29 H 0.15 3.99 8.14 -2.39 -0.02 3.97 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.07 2.26 5.85 -2.39 -0.01 2.25 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -69.83 312.10 0.54 -69.29 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 1.04 Total: 22.37 kcal Atomic # 6 Polarization: -43.10 SS G_CDS: 4.10 Total: -39.01 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -0.71 Total: -92.93 kcal Atomic # 8 Polarization: -109.85 SS G_CDS: -5.64 Total: -115.49 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Atomic # 16 Polarization: 112.97 SS G_CDS: -0.29 Total: 112.69 kcal Total: -69.83 0.54 -69.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080647033.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.652 kcal (2) G-P(sol) polarization free energy of solvation -69.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds