Wall clock time and date at job start Mon Mar 30 2020 02:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35668 * 117.00029 * 2 1 4 4 C 1.39311 * 119.61388 * 180.30468 * 3 2 1 5 5 C 1.38333 * 119.31383 * 180.02562 * 4 3 2 6 6 C 1.38786 * 118.55700 * 359.97438 * 5 4 3 7 7 C 1.39169 * 119.18763 * 0.02562 * 6 5 4 8 8 C 1.48044 * 119.69432 * 179.97438 * 7 6 5 9 9 O 1.21430 * 119.99911 * 353.89979 * 8 7 6 10 10 O 1.34683 * 119.99800 * 174.18000 * 8 7 6 11 11 C 1.45208 * 116.99769 * 181.69041 * 10 8 7 12 12 C 1.53006 * 109.46839 * 181.17476 * 11 10 8 13 13 C 1.50697 * 115.54842 * 186.34417 * 12 11 10 14 14 H 1.08000 * 119.99765 * 144.44300 * 13 12 11 15 15 C 1.37875 * 120.00278 * 324.45123 * 13 12 11 16 16 N 1.31512 * 120.00566 * 167.75844 * 15 13 12 17 17 Si 1.86811 * 119.99876 * 347.75465 * 15 13 12 18 18 H 1.48496 * 109.46757 * 95.64053 * 17 15 13 19 19 H 1.48501 * 109.47294 * 215.64003 * 17 15 13 20 20 H 1.48493 * 109.46921 * 335.63976 * 17 15 13 21 21 C 1.52998 * 117.49919 * 40.68017 * 12 11 10 22 22 C 1.52993 * 117.49891 * 332.01642 * 12 11 10 23 23 N 1.31880 * 119.61796 * 0.57760 * 3 2 1 24 24 H 1.08990 * 109.47423 * 176.77653 * 1 2 3 25 25 H 1.09000 * 109.46905 * 296.77473 * 1 2 3 26 26 H 1.08997 * 109.47108 * 56.77448 * 1 2 3 27 27 H 1.07999 * 120.34619 * 0.03987 * 4 3 2 28 28 H 1.07991 * 120.72136 * 179.97438 * 5 4 3 29 29 H 1.07999 * 120.40518 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.46900 * 301.17263 * 11 10 8 31 31 H 1.08994 * 109.47244 * 61.17984 * 11 10 8 32 32 H 0.96996 * 120.00515 * 179.97438 * 16 15 13 33 33 H 1.09002 * 117.49942 * 359.97438 * 21 12 11 34 34 H 1.08994 * 117.50259 * 145.01776 * 21 12 11 35 35 H 1.08997 * 117.50187 * 214.97418 * 22 12 11 36 36 H 1.09000 * 117.50107 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4365 1.2723 -0.0064 5 6 4.0581 2.5082 -0.0059 6 6 3.2672 3.6486 0.0006 7 6 1.8820 3.5139 0.0068 8 6 1.0276 4.7229 0.0144 9 8 1.5317 5.8218 0.1268 10 8 -0.3092 4.6034 -0.0979 11 6 -1.0812 5.8330 -0.1210 12 6 -2.5707 5.4980 -0.2228 13 6 -3.4909 6.6772 -0.4070 14 1 -4.3720 6.5832 -1.0245 15 6 -3.2079 7.8759 0.2126 16 7 -3.8619 8.9641 -0.1306 17 14 -1.8954 7.9544 1.5396 18 1 -0.6077 8.3834 0.9373 19 1 -2.3035 8.9299 2.5823 20 1 -1.7319 6.6125 2.1541 21 6 -3.0883 4.3207 0.6059 22 6 -2.9545 4.1878 -0.9132 23 7 1.3193 2.3100 0.0116 24 1 -0.3634 -1.0259 -0.0578 25 1 -0.3633 0.4630 0.9175 26 1 -0.3633 0.5631 -0.8596 27 1 4.0241 0.3662 -0.0121 28 1 5.1353 2.5839 -0.0104 29 1 3.7211 4.6286 0.0008 30 1 -0.8970 6.3949 0.7947 31 1 -0.7841 6.4325 -0.9814 32 1 -3.6631 9.8073 0.3056 33 1 -2.3677 3.7845 1.2234 34 1 -4.0945 4.3988 1.0176 35 1 -3.8729 4.1784 -1.5002 36 1 -2.1460 3.5645 -1.2952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083943185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:27 Heat of formation + Delta-G solvation = -39.424385 kcal Electronic energy + Delta-G solvation = -21348.270094 eV Core-core repulsion = 17993.109088 eV Total energy + Delta-G solvation = -3355.161006 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.05185 -39.87287 -38.06153 -37.09867 -35.36129 -32.94539 -32.28347 -31.15644 -28.02185 -27.45128 -25.74271 -24.43918 -23.14670 -21.39963 -21.26686 -19.17814 -18.59855 -18.07219 -16.90949 -16.41004 -16.36721 -16.26801 -15.93672 -15.67108 -14.75238 -14.35778 -14.04131 -13.80769 -13.64855 -13.19002 -12.82810 -12.68384 -12.46180 -11.94834 -11.77543 -11.36661 -11.14628 -10.83384 -10.75877 -10.46172 -10.40514 -10.27874 -9.96584 -9.72806 -9.51108 -9.25162 -8.85378 -8.71503 -8.34371 -6.26787 -4.20608 0.33878 0.97858 2.47745 2.72899 2.87244 3.22785 3.31617 3.33785 3.59274 3.94515 4.26860 4.61915 4.67035 4.71932 4.74865 4.97853 5.16789 5.18518 5.27869 5.35105 5.58674 5.62983 5.70094 5.77569 5.82642 5.97244 6.00497 6.22571 6.52815 6.61863 6.68893 6.86966 6.92805 6.99912 7.25171 7.40013 7.61426 7.98990 8.39364 8.78441 9.35972 10.85266 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.005338 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.189588 B = 5244.243003 C = 6136.345499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.308 6.308 3 C 0.318 3.682 4 C -0.163 4.163 5 C -0.049 4.049 6 C -0.146 4.146 7 C 0.143 3.857 8 C 0.511 3.489 9 O -0.498 6.498 10 O -0.325 6.325 11 C 0.082 3.918 12 C 0.004 3.996 13 C -0.482 4.482 14 H 0.086 0.914 15 C 0.079 3.921 16 N -0.883 5.883 17 Si 0.869 3.131 18 H -0.272 1.272 19 H -0.289 1.289 20 H -0.259 1.259 21 C -0.198 4.198 22 C -0.176 4.176 23 N -0.491 5.491 24 H 0.097 0.903 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.149 0.851 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.269 0.731 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.899 -16.141 0.727 21.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.214 6.214 3 C 0.136 3.864 4 C -0.184 4.184 5 C -0.074 4.074 6 C -0.167 4.167 7 C 0.007 3.993 8 C 0.353 3.647 9 O -0.386 6.386 10 O -0.240 6.240 11 C 0.011 3.989 12 C 0.003 3.997 13 C -0.519 4.519 14 H 0.104 0.896 15 C -0.125 4.125 16 N -0.519 5.519 17 Si 0.699 3.301 18 H -0.198 1.198 19 H -0.216 1.216 20 H -0.184 1.184 21 C -0.236 4.236 22 C -0.214 4.214 23 N -0.217 5.217 24 H 0.115 0.885 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.166 0.834 28 H 0.170 0.830 29 H 0.171 0.829 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.118 -15.868 0.794 21.254 hybrid contribution 1.244 0.446 0.758 1.524 sum 15.362 -15.422 1.552 21.823 Atomic orbital electron populations 1.22953 0.76364 1.03111 1.03399 1.86223 1.23598 1.23844 1.87755 1.19832 0.89323 0.84677 0.92581 1.21363 0.92014 0.99950 1.05057 1.21420 1.00931 0.90566 0.94527 1.22005 0.92432 1.01290 1.00977 1.19846 0.90720 0.89059 0.99660 1.20769 0.82643 0.87481 0.73782 1.90856 1.75385 1.27026 1.45366 1.86628 1.17031 1.38932 1.81360 1.23682 0.90675 0.82536 1.02055 1.19361 0.88406 0.90449 1.01532 1.20294 1.08569 0.92123 1.30899 0.89584 1.24983 0.96044 0.95265 0.96214 1.69893 1.42051 0.99267 1.40661 0.87213 0.81926 0.77879 0.83086 1.19821 1.21626 1.18450 1.23095 1.01539 1.05952 0.93001 1.22732 1.01780 1.01891 0.94956 1.67296 1.40593 0.97917 1.15886 0.88471 0.91886 0.91566 0.83373 0.82961 0.82858 0.91531 0.90390 0.92125 0.90978 0.89766 0.90054 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.40 101.05 1.05 1.43 16 2 O -0.31 -3.60 10.48 -18.71 -0.20 -3.80 16 3 C 0.32 3.99 7.49 -17.13 -0.13 3.86 16 4 C -0.16 -1.52 10.05 -39.15 -0.39 -1.92 16 5 C -0.05 -0.42 10.16 -39.34 -0.40 -0.82 16 6 C -0.15 -1.73 9.63 -39.03 -0.38 -2.10 16 7 C 0.14 2.22 6.74 -83.04 -0.56 1.66 16 8 C 0.51 9.85 7.94 34.75 0.28 10.13 16 9 O -0.50 -10.45 16.10 -19.21 -0.31 -10.76 16 10 O -0.33 -6.87 8.32 -40.45 -0.34 -7.20 16 11 C 0.08 1.95 4.11 37.16 0.15 2.10 16 12 C 0.00 0.09 1.84 -155.66 -0.29 -0.20 16 13 C -0.48 -13.52 9.57 -34.44 -0.33 -13.85 16 14 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 15 C 0.08 2.26 5.42 -17.82 -0.10 2.17 16 16 N -0.88 -26.45 13.96 55.43 0.77 -25.67 16 17 Si 0.87 22.05 24.22 -169.99 -4.12 17.93 16 18 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.26 -6.41 6.36 56.52 0.36 -6.05 16 21 C -0.20 -4.34 9.67 -26.69 -0.26 -4.60 16 22 C -0.18 -3.75 9.63 -26.70 -0.26 -4.01 16 23 N -0.49 -7.46 8.95 -9.89 -0.09 -7.55 16 24 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.75 8.03 -51.93 -0.42 0.33 16 27 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 29 H 0.15 1.66 7.64 -52.49 -0.40 1.26 16 30 H 0.07 1.66 2.62 -51.93 -0.14 1.52 16 31 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 32 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 33 H 0.07 1.51 7.87 -51.93 -0.41 1.10 16 34 H 0.08 1.82 8.14 -51.93 -0.42 1.40 16 35 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 36 H 0.08 1.61 7.46 -51.93 -0.39 1.22 16 LS Contribution 312.06 15.07 4.70 4.70 Total: -1.00 -32.11 312.06 -5.49 -37.60 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.31 Total: 0.90 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.61 Total: -6.15 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.69 Total: -33.22 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.84 Total: -21.76 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.12 Total: 17.93 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.11 -5.49 -37.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083943185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.825 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds