Wall clock time and date at job start Mon Mar 30 2020 02:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35668 * 117.00029 * 2 1 4 4 C 1.39311 * 119.61388 * 180.30468 * 3 2 1 5 5 C 1.38333 * 119.31383 * 180.02562 * 4 3 2 6 6 C 1.38786 * 118.55700 * 359.97438 * 5 4 3 7 7 C 1.39169 * 119.18763 * 0.02562 * 6 5 4 8 8 C 1.48044 * 119.69432 * 179.97438 * 7 6 5 9 9 O 1.21430 * 119.99911 * 353.89979 * 8 7 6 10 10 O 1.34683 * 119.99800 * 174.18000 * 8 7 6 11 11 C 1.45208 * 116.99769 * 181.69041 * 10 8 7 12 12 C 1.53006 * 109.46839 * 181.17476 * 11 10 8 13 13 C 1.50697 * 115.54842 * 186.34417 * 12 11 10 14 14 H 1.08000 * 119.99765 * 144.44300 * 13 12 11 15 15 C 1.37875 * 120.00278 * 324.45123 * 13 12 11 16 16 N 1.31512 * 120.00566 * 167.75844 * 15 13 12 17 17 Si 1.86811 * 119.99876 * 347.75465 * 15 13 12 18 18 H 1.48496 * 109.46757 * 95.64053 * 17 15 13 19 19 H 1.48501 * 109.47294 * 215.64003 * 17 15 13 20 20 H 1.48493 * 109.46921 * 335.63976 * 17 15 13 21 21 C 1.52998 * 117.49919 * 40.68017 * 12 11 10 22 22 C 1.52993 * 117.49891 * 332.01642 * 12 11 10 23 23 N 1.31880 * 119.61796 * 0.57760 * 3 2 1 24 24 H 1.08990 * 109.47423 * 176.77653 * 1 2 3 25 25 H 1.09000 * 109.46905 * 296.77473 * 1 2 3 26 26 H 1.08997 * 109.47108 * 56.77448 * 1 2 3 27 27 H 1.07999 * 120.34619 * 0.03987 * 4 3 2 28 28 H 1.07991 * 120.72136 * 179.97438 * 5 4 3 29 29 H 1.07999 * 120.40518 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.46900 * 301.17263 * 11 10 8 31 31 H 1.08994 * 109.47244 * 61.17984 * 11 10 8 32 32 H 0.96996 * 120.00515 * 179.97438 * 16 15 13 33 33 H 1.09002 * 117.49942 * 359.97438 * 21 12 11 34 34 H 1.08994 * 117.50259 * 145.01776 * 21 12 11 35 35 H 1.08997 * 117.50187 * 214.97418 * 22 12 11 36 36 H 1.09000 * 117.50107 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4365 1.2723 -0.0064 5 6 4.0581 2.5082 -0.0059 6 6 3.2672 3.6486 0.0006 7 6 1.8820 3.5139 0.0068 8 6 1.0276 4.7229 0.0144 9 8 1.5317 5.8218 0.1268 10 8 -0.3092 4.6034 -0.0979 11 6 -1.0812 5.8330 -0.1210 12 6 -2.5707 5.4980 -0.2228 13 6 -3.4909 6.6772 -0.4070 14 1 -4.3720 6.5832 -1.0245 15 6 -3.2079 7.8759 0.2126 16 7 -3.8619 8.9641 -0.1306 17 14 -1.8954 7.9544 1.5396 18 1 -0.6077 8.3834 0.9373 19 1 -2.3035 8.9299 2.5823 20 1 -1.7319 6.6125 2.1541 21 6 -3.0883 4.3207 0.6059 22 6 -2.9545 4.1878 -0.9132 23 7 1.3193 2.3100 0.0116 24 1 -0.3634 -1.0259 -0.0578 25 1 -0.3633 0.4630 0.9175 26 1 -0.3633 0.5631 -0.8596 27 1 4.0241 0.3662 -0.0121 28 1 5.1353 2.5839 -0.0104 29 1 3.7211 4.6286 0.0008 30 1 -0.8970 6.3949 0.7947 31 1 -0.7841 6.4325 -0.9814 32 1 -3.6631 9.8073 0.3056 33 1 -2.3677 3.7845 1.2234 34 1 -4.0945 4.3988 1.0176 35 1 -3.8729 4.1784 -1.5002 36 1 -2.1460 3.5645 -1.2952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083943185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:27 Heat of formation + Delta-G solvation = -61.711041 kcal Electronic energy + Delta-G solvation = -21349.236516 eV Core-core repulsion = 17993.109088 eV Total energy + Delta-G solvation = -3356.127428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.14909 -41.21747 -39.20089 -38.61020 -37.05524 -34.45730 -33.82091 -32.10927 -29.75440 -28.43697 -27.51817 -25.77396 -24.00951 -23.14864 -22.59738 -21.15391 -19.81223 -19.23732 -18.72874 -17.84920 -17.76756 -17.11280 -17.04905 -16.91445 -16.61819 -15.73492 -15.38188 -15.23343 -14.79630 -14.65859 -14.33711 -14.28963 -13.64540 -13.30243 -13.10472 -12.77592 -12.70450 -12.47117 -12.27744 -12.23498 -12.13293 -11.76693 -11.51432 -11.21820 -11.10135 -10.87237 -10.70318 -10.34175 -9.75248 -8.48065 -6.44106 -0.66971 0.16262 1.17974 1.20179 1.22456 1.27135 1.39370 2.02853 2.15213 2.61095 2.69606 2.85884 3.32612 3.65447 3.78345 3.86284 3.92021 3.94883 4.09223 4.15496 4.37045 4.41651 4.43846 4.46540 4.69247 4.79501 4.85011 4.89323 4.93125 5.00861 5.12826 5.25700 5.27795 5.50418 5.54479 6.02465 6.15982 6.32006 6.55183 6.65559 7.14633 8.68243 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.023820 B = 0.005338 C = 0.004562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.189588 B = 5244.243003 C = 6136.345499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.309 6.309 3 C 0.298 3.702 4 C -0.140 4.140 5 C -0.032 4.032 6 C -0.136 4.136 7 C 0.105 3.895 8 C 0.508 3.492 9 O -0.525 6.525 10 O -0.328 6.328 11 C 0.092 3.908 12 C -0.031 4.031 13 C -0.486 4.486 14 H 0.054 0.946 15 C 0.035 3.965 16 N -0.926 5.926 17 Si 0.923 3.077 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.250 1.250 21 C -0.181 4.181 22 C -0.153 4.153 23 N -0.521 5.521 24 H 0.128 0.872 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.187 0.813 28 H 0.204 0.796 29 H 0.160 0.840 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.272 0.728 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.938 -18.936 1.356 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.216 6.216 3 C 0.116 3.884 4 C -0.160 4.160 5 C -0.056 4.056 6 C -0.157 4.157 7 C -0.028 4.028 8 C 0.352 3.648 9 O -0.414 6.414 10 O -0.243 6.243 11 C 0.019 3.981 12 C -0.032 4.032 13 C -0.523 4.523 14 H 0.073 0.927 15 C -0.165 4.165 16 N -0.564 5.564 17 Si 0.751 3.249 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.176 1.176 21 C -0.219 4.219 22 C -0.191 4.191 23 N -0.248 5.248 24 H 0.146 0.854 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.204 0.796 28 H 0.221 0.779 29 H 0.178 0.822 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.159 -18.683 1.424 25.407 hybrid contribution 0.371 1.156 0.487 1.308 sum 17.530 -17.528 1.911 24.863 Atomic orbital electron populations 1.23030 0.76008 1.04729 1.02049 1.86232 1.23993 1.23494 1.87855 1.20301 0.90702 0.84118 0.93328 1.21902 0.90704 1.01829 1.01581 1.21977 1.02906 0.88712 0.92016 1.22261 0.90979 1.03102 0.99361 1.19527 0.91284 0.87822 1.04186 1.21576 0.81887 0.88870 0.72488 1.90823 1.75412 1.28408 1.46792 1.86617 1.18453 1.37232 1.81979 1.23223 0.90724 0.83388 1.00763 1.19263 0.88477 0.90345 1.05076 1.20425 1.08307 0.93713 1.29902 0.92748 1.25591 0.97973 0.94972 0.97972 1.69986 1.44141 0.99971 1.42305 0.86327 0.79384 0.78252 0.80902 1.20182 1.20869 1.17583 1.23051 1.01665 1.03524 0.93626 1.22750 1.02210 0.99316 0.94781 1.67055 1.42129 0.98470 1.17130 0.85370 0.93137 0.93010 0.79578 0.77936 0.82216 0.92832 0.91715 0.91808 0.89695 0.89565 0.89595 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.40 113.37 1.18 1.88 16 2 O -0.31 -6.50 10.48 -89.85 -0.94 -7.44 16 3 C 0.30 6.71 7.49 84.94 0.64 7.35 16 4 C -0.14 -1.94 10.05 22.55 0.23 -1.72 16 5 C -0.03 -0.38 10.16 22.42 0.23 -0.15 16 6 C -0.14 -2.83 9.63 22.62 0.22 -2.62 16 7 C 0.11 3.16 6.74 41.81 0.28 3.44 16 8 C 0.51 19.60 7.94 70.42 0.56 20.16 16 9 O -0.52 -22.19 16.10 20.06 0.32 -21.86 16 10 O -0.33 -13.89 8.32 -55.92 -0.47 -14.36 16 11 C 0.09 4.38 4.11 71.98 0.30 4.68 16 12 C -0.03 -1.51 1.84 -52.93 -0.10 -1.60 16 13 C -0.49 -28.06 9.57 25.60 0.25 -27.81 16 14 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 15 C 0.04 2.07 5.42 84.65 0.46 2.53 16 16 N -0.93 -57.21 13.96 21.45 0.30 -56.91 16 17 Si 0.92 46.55 24.22 68.60 1.66 48.22 16 18 H -0.28 -13.91 7.11 99.48 0.71 -13.21 16 19 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 20 H -0.25 -12.15 6.36 99.48 0.63 -11.52 16 21 C -0.18 -7.76 9.67 30.62 0.30 -7.46 16 22 C -0.15 -6.41 9.63 30.62 0.29 -6.12 16 23 N -0.52 -15.21 8.95 -298.25 -2.67 -17.87 16 24 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 1.13 8.03 -2.39 -0.02 1.11 16 27 H 0.19 1.20 8.06 -2.91 -0.02 1.18 16 28 H 0.20 0.44 8.06 -2.92 -0.02 0.42 16 29 H 0.16 3.08 7.64 -2.91 -0.02 3.06 16 30 H 0.05 2.69 2.62 -2.39 -0.01 2.68 16 31 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.08 3.43 7.87 -2.39 -0.02 3.41 16 34 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 35 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 36 H 0.10 3.73 7.46 -2.39 -0.02 3.71 16 Total: -1.00 -72.70 312.06 4.05 -68.64 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.02 Total: 9.03 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: 4.82 Total: -7.45 kcal Atomic # 7 Polarization: -72.42 SS G_CDS: -2.37 Total: -74.79 kcal Atomic # 8 Polarization: -42.57 SS G_CDS: -1.08 Total: -43.66 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.66 Total: 48.22 kcal Total: -72.70 4.05 -68.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083943185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.933 kcal (2) G-P(sol) polarization free energy of solvation -72.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds