Wall clock time and date at job start Mon Mar 30 2020 01:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47227 * 2 1 4 4 C 1.36937 * 119.99863 * 293.72273 * 3 2 1 5 5 H 1.08000 * 119.99750 * 149.44103 * 4 3 2 6 6 C 1.38816 * 120.00054 * 329.43658 * 4 3 2 7 7 N 1.31612 * 119.99914 * 337.45398 * 6 4 3 8 8 Si 1.86796 * 119.99962 * 157.45619 * 6 4 3 9 9 H 1.48506 * 109.47300 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47048 * 120.00159 * 8 6 4 11 11 H 1.48504 * 109.47258 * 240.00049 * 8 6 4 12 12 S 1.65600 * 120.00311 * 113.72263 * 3 2 1 13 13 O 1.42096 * 104.27798 * 206.07190 * 12 3 2 14 14 O 1.42101 * 104.27719 * 333.93048 * 12 3 2 15 15 C 1.81405 * 104.44926 * 89.99825 * 12 3 2 16 16 C 1.52997 * 109.46911 * 180.02562 * 15 12 3 17 17 C 1.53000 * 109.46831 * 180.02562 * 16 15 12 18 18 H 1.08998 * 109.82457 * 305.56248 * 17 16 15 19 19 C 1.54390 * 109.82938 * 184.58759 * 17 16 15 20 20 C 1.55308 * 102.24971 * 219.13013 * 19 17 16 21 21 C 1.54944 * 100.94352 * 34.12736 * 20 19 17 22 22 O 1.43230 * 109.83519 * 66.45275 * 17 16 15 23 23 H 1.09001 * 109.47267 * 60.00231 * 1 2 3 24 24 H 1.09000 * 109.47126 * 299.99884 * 1 2 3 25 25 H 1.09004 * 109.46865 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46886 * 120.00426 * 2 1 3 27 27 H 1.09005 * 109.46702 * 239.99538 * 2 1 3 28 28 H 0.97003 * 120.00238 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46714 * 300.00154 * 15 12 3 30 30 H 1.08997 * 109.46730 * 59.99958 * 15 12 3 31 31 H 1.09002 * 109.47185 * 299.99409 * 16 15 12 32 32 H 1.08994 * 109.47546 * 59.99725 * 16 15 12 33 33 H 1.09001 * 110.84323 * 337.31292 * 19 17 16 34 34 H 1.08996 * 110.85191 * 100.93741 * 19 17 16 35 35 H 1.09001 * 111.12082 * 276.20828 * 20 19 17 36 36 H 1.09002 * 111.16217 * 152.06650 * 20 19 17 37 37 H 1.08997 * 110.30730 * 204.63794 * 21 20 19 38 38 H 1.09005 * 110.30847 * 82.47626 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 1.7968 2.1857 -1.0857 5 1 1.6842 3.2517 -0.9538 6 6 1.7169 1.6311 -2.3558 7 7 2.2719 0.4630 -2.5998 8 14 0.8218 2.5429 -3.7184 9 1 0.2908 3.8252 -3.1902 10 1 1.7651 2.8193 -4.8316 11 1 -0.3015 1.7092 -4.2170 12 16 2.8383 1.9695 1.3129 13 8 2.6119 3.3716 1.2680 14 8 2.3670 1.1858 2.4005 15 6 4.5787 1.5942 0.9651 16 6 5.4489 2.0943 2.1199 17 6 6.9168 1.7783 1.8262 18 1 7.0316 0.7144 1.6187 19 6 7.7901 2.1750 3.0360 20 6 9.0517 2.7681 2.3513 21 6 8.4235 3.4274 1.0977 22 8 7.3630 2.5437 0.7008 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 2.2158 0.0752 -3.4873 29 1 4.7033 0.5167 0.8568 30 1 4.8796 2.0894 0.0419 31 1 5.3243 3.1717 2.2286 32 1 5.1478 1.5988 3.0428 33 1 7.2896 2.9275 3.6454 34 1 8.0476 1.2998 3.6322 35 1 9.7532 1.9820 2.0719 36 1 9.5317 3.5118 2.9874 37 1 9.1644 3.5105 0.3026 38 1 8.0235 4.4102 1.3473 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084761250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:54 Heat of formation + Delta-G solvation = -125.091822 kcal Electronic energy + Delta-G solvation = -20691.856007 eV Core-core repulsion = 17468.424134 eV Total energy + Delta-G solvation = -3223.431873 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.39625 -36.04762 -35.63428 -34.45695 -33.28630 -32.04700 -31.75058 -29.18480 -28.14012 -24.87886 -23.58482 -21.62990 -21.50068 -20.63207 -18.27588 -16.95007 -16.89089 -16.45417 -15.93748 -15.03398 -14.78702 -14.70027 -14.24297 -13.85633 -13.49965 -13.40935 -12.79661 -12.63890 -12.25689 -12.00647 -11.89270 -11.77427 -11.34368 -11.23607 -10.99940 -10.93838 -10.88893 -10.86872 -10.68838 -10.64097 -10.55857 -10.40168 -10.12920 -9.74562 -9.57231 -9.31296 -9.13163 -7.79823 -6.46001 -4.02059 1.70656 3.12723 3.20496 3.28178 3.91714 3.97965 4.34771 4.46044 4.73388 4.77668 4.85559 5.14124 5.18857 5.30459 5.34731 5.48237 5.60869 5.66070 5.69524 5.74189 5.79962 5.94172 6.07357 6.15247 6.20086 6.37719 6.46401 6.50759 6.76461 6.80668 7.02465 7.19802 7.27965 7.40015 7.63161 8.38107 8.77084 9.24316 10.44247 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021607 B = 0.005675 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.589515 B = 4932.650820 C = 5618.717263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.109 3.891 3 N -0.807 5.807 4 C -0.244 4.244 5 H 0.110 0.890 6 C 0.036 3.964 7 N -0.830 5.830 8 Si 0.919 3.081 9 H -0.262 1.262 10 H -0.279 1.279 11 H -0.277 1.277 12 S 2.484 3.516 13 O -0.985 6.985 14 O -1.006 7.006 15 C -0.648 4.648 16 C -0.115 4.115 17 C 0.088 3.912 18 H 0.081 0.919 19 C -0.155 4.155 20 C -0.156 4.156 21 C 0.047 3.953 22 O -0.370 6.370 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.104 0.896 28 H 0.273 0.727 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.660 0.101 4.537 9.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 N -0.631 5.631 4 C -0.391 4.391 5 H 0.128 0.872 6 C -0.177 4.177 7 N -0.469 5.469 8 Si 0.745 3.255 9 H -0.186 1.186 10 H -0.204 1.204 11 H -0.202 1.202 12 S 2.586 3.414 13 O -0.975 6.975 14 O -0.996 6.996 15 C -0.769 4.769 16 C -0.154 4.154 17 C 0.029 3.971 18 H 0.099 0.901 19 C -0.193 4.193 20 C -0.194 4.194 21 C -0.030 4.030 22 O -0.290 6.290 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.121 0.879 28 H 0.083 0.917 29 H 0.124 0.876 30 H 0.140 0.860 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.388 0.355 5.207 9.879 hybrid contribution 0.470 0.031 -0.883 1.000 sum 8.857 0.386 4.325 9.864 Atomic orbital electron populations 1.21872 0.97210 0.99612 1.01673 1.21408 0.93887 0.83555 1.02844 1.53664 1.55297 1.20008 1.34171 1.19824 1.41260 0.93301 0.84674 0.87216 1.25699 0.96798 0.96628 0.98551 1.69913 1.37222 1.17286 1.22451 0.85961 0.79334 0.80136 0.80069 1.18569 1.20450 1.20234 1.12805 0.76684 0.74969 0.76945 1.93353 1.84326 1.32584 1.87263 1.93338 1.79173 1.71220 1.55877 1.30988 1.30559 1.08975 1.06346 1.21616 0.94657 1.01693 0.97391 1.22757 0.93301 0.95893 0.85120 0.90149 1.23251 0.95836 1.01909 0.98324 1.23261 0.97913 1.00782 0.97457 1.23376 0.89514 0.93775 0.96328 1.88512 1.52887 1.54792 1.32774 0.92247 0.93811 0.93721 0.92580 0.87869 0.91684 0.87608 0.86009 0.91073 0.90749 0.90255 0.90019 0.90523 0.90144 0.89963 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.96 37.16 0.37 -2.61 16 2 C 0.11 2.48 5.78 -4.05 -0.02 2.45 16 3 N -0.81 -19.80 2.91 -59.91 -0.17 -19.97 16 4 C -0.24 -6.19 8.63 -15.06 -0.13 -6.32 16 5 H 0.11 2.86 7.26 -52.49 -0.38 2.48 16 6 C 0.04 0.86 4.63 -17.43 -0.08 0.78 16 7 N -0.83 -20.27 11.06 55.49 0.61 -19.66 16 8 Si 0.92 18.98 29.61 -169.99 -5.03 13.94 16 9 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 10 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 11 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 12 S 2.48 59.02 5.36 -107.50 -0.58 58.45 16 13 O -0.99 -26.10 16.82 -57.54 -0.97 -27.06 16 14 O -1.01 -25.20 16.65 -57.54 -0.96 -26.16 16 15 C -0.65 -13.31 6.09 37.16 0.23 -13.08 16 16 C -0.11 -2.03 4.79 -26.73 -0.13 -2.16 16 17 C 0.09 1.34 3.52 -26.00 -0.09 1.25 16 18 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 19 C -0.16 -1.79 6.54 -24.78 -0.16 -1.95 16 20 C -0.16 -1.57 7.16 -24.48 -0.18 -1.75 16 21 C 0.05 0.58 7.78 38.18 0.30 0.88 16 22 O -0.37 -6.27 10.63 -35.23 -0.37 -6.64 16 23 H 0.06 1.26 7.41 -51.93 -0.39 0.88 16 24 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.21 7.01 -51.93 -0.36 0.84 16 27 H 0.10 2.42 5.53 -51.93 -0.29 2.14 16 28 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 29 H 0.11 2.06 8.14 -51.92 -0.42 1.64 16 30 H 0.12 2.67 7.88 -51.93 -0.41 2.26 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 0.88 7.85 -51.93 -0.41 0.47 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -30.33 320.05 -8.56 -38.89 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.02 Total: 5.90 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 0.10 Total: -22.51 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.44 Total: -39.63 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -2.30 Total: -59.87 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.94 kcal Atomic # 16 Polarization: 59.02 SS G_CDS: -0.58 Total: 58.45 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.33 -8.56 -38.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084761250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.201 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds