Wall clock time and date at job start Mon Mar 30 2020 01:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47227 * 2 1 4 4 C 1.36937 * 119.99863 * 293.72273 * 3 2 1 5 5 H 1.08000 * 119.99750 * 149.44103 * 4 3 2 6 6 C 1.38816 * 120.00054 * 329.43658 * 4 3 2 7 7 N 1.31612 * 119.99914 * 337.45398 * 6 4 3 8 8 Si 1.86796 * 119.99962 * 157.45619 * 6 4 3 9 9 H 1.48506 * 109.47300 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47048 * 120.00159 * 8 6 4 11 11 H 1.48504 * 109.47258 * 240.00049 * 8 6 4 12 12 S 1.65600 * 120.00311 * 113.72263 * 3 2 1 13 13 O 1.42096 * 104.27798 * 206.07190 * 12 3 2 14 14 O 1.42101 * 104.27719 * 333.93048 * 12 3 2 15 15 C 1.81405 * 104.44926 * 89.99825 * 12 3 2 16 16 C 1.52997 * 109.46911 * 180.02562 * 15 12 3 17 17 C 1.53000 * 109.46831 * 180.02562 * 16 15 12 18 18 H 1.08998 * 109.82457 * 305.56248 * 17 16 15 19 19 C 1.54390 * 109.82938 * 184.58759 * 17 16 15 20 20 C 1.55308 * 102.24971 * 219.13013 * 19 17 16 21 21 C 1.54944 * 100.94352 * 34.12736 * 20 19 17 22 22 O 1.43230 * 109.83519 * 66.45275 * 17 16 15 23 23 H 1.09001 * 109.47267 * 60.00231 * 1 2 3 24 24 H 1.09000 * 109.47126 * 299.99884 * 1 2 3 25 25 H 1.09004 * 109.46865 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46886 * 120.00426 * 2 1 3 27 27 H 1.09005 * 109.46702 * 239.99538 * 2 1 3 28 28 H 0.97003 * 120.00238 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46714 * 300.00154 * 15 12 3 30 30 H 1.08997 * 109.46730 * 59.99958 * 15 12 3 31 31 H 1.09002 * 109.47185 * 299.99409 * 16 15 12 32 32 H 1.08994 * 109.47546 * 59.99725 * 16 15 12 33 33 H 1.09001 * 110.84323 * 337.31292 * 19 17 16 34 34 H 1.08996 * 110.85191 * 100.93741 * 19 17 16 35 35 H 1.09001 * 111.12082 * 276.20828 * 20 19 17 36 36 H 1.09002 * 111.16217 * 152.06650 * 20 19 17 37 37 H 1.08997 * 110.30730 * 204.63794 * 21 20 19 38 38 H 1.09005 * 110.30847 * 82.47626 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 1.7968 2.1857 -1.0857 5 1 1.6842 3.2517 -0.9538 6 6 1.7169 1.6311 -2.3558 7 7 2.2719 0.4630 -2.5998 8 14 0.8218 2.5429 -3.7184 9 1 0.2908 3.8252 -3.1902 10 1 1.7651 2.8193 -4.8316 11 1 -0.3015 1.7092 -4.2170 12 16 2.8383 1.9695 1.3129 13 8 2.6119 3.3716 1.2680 14 8 2.3670 1.1858 2.4005 15 6 4.5787 1.5942 0.9651 16 6 5.4489 2.0943 2.1199 17 6 6.9168 1.7783 1.8262 18 1 7.0316 0.7144 1.6187 19 6 7.7901 2.1750 3.0360 20 6 9.0517 2.7681 2.3513 21 6 8.4235 3.4274 1.0977 22 8 7.3630 2.5437 0.7008 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 2.2158 0.0752 -3.4873 29 1 4.7033 0.5167 0.8568 30 1 4.8796 2.0894 0.0419 31 1 5.3243 3.1717 2.2286 32 1 5.1478 1.5988 3.0428 33 1 7.2896 2.9275 3.6454 34 1 8.0476 1.2998 3.6322 35 1 9.7532 1.9820 2.0719 36 1 9.5317 3.5118 2.9874 37 1 9.1644 3.5105 0.3026 38 1 8.0235 4.4102 1.3473 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084761250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:53 Heat of formation + Delta-G solvation = -145.689785 kcal Electronic energy + Delta-G solvation = -20692.749202 eV Core-core repulsion = 17468.424134 eV Total energy + Delta-G solvation = -3224.325068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.48080 -37.88193 -37.66505 -36.50152 -34.70624 -33.58991 -33.02719 -30.95970 -29.36036 -26.73230 -24.91569 -23.28843 -22.53691 -21.87635 -20.16332 -18.83941 -18.32377 -17.99885 -17.24588 -16.79984 -16.52981 -16.35992 -15.59561 -15.32049 -15.04815 -14.63143 -14.42874 -14.03875 -13.87719 -13.72947 -13.36547 -13.07968 -12.78102 -12.71249 -12.69487 -12.61097 -12.57702 -12.39497 -12.29892 -12.11971 -11.96013 -11.91534 -11.73351 -11.55036 -11.18885 -11.05019 -10.49275 -9.64347 -8.28281 -5.94679 -0.18466 1.47752 1.51601 1.64050 2.19934 2.53399 2.88144 2.91350 3.31131 3.53938 3.60341 3.76137 3.92471 4.00255 4.05801 4.20206 4.36164 4.40195 4.51884 4.66519 4.72147 4.74331 4.78704 4.81377 4.87502 4.93855 5.01928 5.04254 5.11340 5.25817 5.29048 5.43141 5.64130 5.83275 6.12366 6.49574 6.89879 7.36727 8.63384 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.021607 B = 0.005675 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.589515 B = 4932.650820 C = 5618.717263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.104 3.896 3 N -0.824 5.824 4 C -0.281 4.281 5 H 0.091 0.909 6 C 0.011 3.989 7 N -0.851 5.851 8 Si 0.974 3.026 9 H -0.267 1.267 10 H -0.274 1.274 11 H -0.267 1.267 12 S 2.502 3.498 13 O -1.016 7.016 14 O -1.018 7.018 15 C -0.628 4.628 16 C -0.123 4.123 17 C 0.082 3.918 18 H 0.083 0.917 19 C -0.152 4.152 20 C -0.145 4.145 21 C 0.032 3.968 22 O -0.407 6.407 23 H 0.047 0.953 24 H 0.037 0.963 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.279 0.721 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.958 -0.389 5.093 11.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 N -0.649 5.649 4 C -0.425 4.425 5 H 0.109 0.891 6 C -0.200 4.200 7 N -0.489 5.489 8 Si 0.797 3.203 9 H -0.191 1.191 10 H -0.200 1.200 11 H -0.192 1.192 12 S 2.607 3.393 13 O -1.006 7.006 14 O -1.008 7.008 15 C -0.753 4.753 16 C -0.161 4.161 17 C 0.024 3.976 18 H 0.101 0.899 19 C -0.190 4.190 20 C -0.182 4.182 21 C -0.043 4.043 22 O -0.327 6.327 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.089 0.911 29 H 0.137 0.863 30 H 0.126 0.874 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.106 0.894 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.632 -0.136 5.732 11.209 hybrid contribution 0.178 0.176 -0.949 0.981 sum 9.810 0.040 4.783 10.914 Atomic orbital electron populations 1.21840 0.95929 1.01385 1.00807 1.21518 0.95138 0.82785 1.02760 1.53500 1.57069 1.20573 1.33730 1.19693 1.44398 0.92755 0.85635 0.89128 1.26247 0.96746 0.97272 0.99694 1.69948 1.37690 1.18103 1.23200 0.85157 0.78527 0.78951 0.77616 1.19115 1.19950 1.19163 1.11439 0.77726 0.73946 0.76237 1.93319 1.85415 1.34288 1.87611 1.93323 1.80100 1.71203 1.56209 1.30676 1.27777 1.09804 1.07081 1.21781 0.96291 1.01437 0.96634 1.22821 0.92080 0.96028 0.86687 0.89881 1.23270 0.95627 1.03090 0.96966 1.23251 0.97357 1.01409 0.96190 1.23661 0.89075 0.93356 0.98255 1.88473 1.54376 1.55668 1.34205 0.93340 0.94369 0.90613 0.91835 0.88591 0.91111 0.86305 0.87404 0.91658 0.89040 0.89898 0.87745 0.89400 0.87627 0.88646 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.74 9.96 71.98 0.72 -5.02 16 2 C 0.10 4.71 5.78 86.38 0.50 5.21 16 3 N -0.82 -41.04 2.91 -343.45 -1.00 -42.04 16 4 C -0.28 -14.61 8.63 84.03 0.73 -13.89 16 5 H 0.09 4.94 7.26 -2.91 -0.02 4.92 16 6 C 0.01 0.52 4.63 84.86 0.39 0.92 16 7 N -0.85 -41.67 11.06 21.65 0.24 -41.43 16 8 Si 0.97 39.02 29.61 68.60 2.03 41.05 16 9 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 10 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 11 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 12 S 2.50 119.95 5.36 -56.49 -0.30 119.65 16 13 O -1.02 -55.01 16.82 -127.65 -2.15 -57.16 16 14 O -1.02 -50.66 16.65 -127.65 -2.13 -52.78 16 15 C -0.63 -25.66 6.09 71.98 0.44 -25.22 16 16 C -0.12 -4.20 4.79 30.59 0.15 -4.05 16 17 C 0.08 2.37 3.52 31.07 0.11 2.48 16 18 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 19 C -0.15 -3.03 6.54 31.86 0.21 -2.83 16 20 C -0.14 -2.44 7.16 32.05 0.23 -2.21 16 21 C 0.03 0.76 7.78 72.65 0.56 1.32 16 22 O -0.41 -13.42 10.63 -148.98 -1.58 -15.01 16 23 H 0.05 2.06 7.41 -2.39 -0.02 2.04 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 26 H 0.06 2.71 7.01 -2.38 -0.02 2.69 16 27 H 0.10 4.52 5.53 -2.38 -0.01 4.51 16 28 H 0.28 12.63 8.31 -92.71 -0.77 11.86 16 29 H 0.12 4.54 8.14 -2.39 -0.02 4.53 16 30 H 0.11 4.80 7.88 -2.39 -0.02 4.78 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.08 1.60 7.85 -2.39 -0.02 1.58 16 34 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -65.09 320.05 0.17 -64.92 By element: Atomic # 1 Polarization: 25.05 SS G_CDS: 1.03 Total: 26.08 kcal Atomic # 6 Polarization: -47.32 SS G_CDS: 4.03 Total: -43.29 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -0.76 Total: -83.47 kcal Atomic # 8 Polarization: -119.09 SS G_CDS: -5.86 Total: -124.95 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: 119.95 SS G_CDS: -0.30 Total: 119.65 kcal Total: -65.09 0.17 -64.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084761250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.769 kcal (2) G-P(sol) polarization free energy of solvation -65.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds