Wall clock time and date at job start Mon Mar 30 2020 02:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35410 * 116.99959 * 2 1 4 4 N 1.32230 * 119.80580 * 0.26079 * 3 2 1 5 5 C 1.31885 * 121.80571 * 180.31544 * 4 3 2 6 6 C 1.38367 * 121.19936 * 359.68409 * 5 4 3 7 7 C 1.38321 * 119.46430 * 0.02562 * 6 5 4 8 8 C 1.40042 * 118.34379 * 359.97438 * 7 6 5 9 9 C 1.47384 * 120.60321 * 179.97438 * 8 7 6 10 10 O 1.21513 * 120.00290 * 185.24670 * 9 8 7 11 11 O 1.34756 * 120.00102 * 5.24422 * 9 8 7 12 12 C 1.45196 * 117.00221 * 185.08016 * 11 9 8 13 13 C 1.52998 * 109.47287 * 184.90737 * 12 11 9 14 14 C 1.50699 * 115.55000 * 301.66923 * 13 12 11 15 15 H 1.08004 * 119.99962 * 95.21980 * 14 13 12 16 16 C 1.37881 * 120.00226 * 275.22063 * 14 13 12 17 17 N 1.31512 * 119.99661 * 5.68299 * 16 14 13 18 18 Si 1.86799 * 119.99992 * 185.68064 * 16 14 13 19 19 H 1.48502 * 109.46717 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.47321 * 299.99785 * 18 16 14 21 21 H 1.48497 * 109.47151 * 60.00204 * 18 16 14 22 22 C 1.52996 * 117.49853 * 87.33918 * 13 12 11 23 23 C 1.52997 * 117.49934 * 155.99650 * 13 12 11 24 24 H 1.08995 * 109.46958 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47148 * 300.00746 * 1 2 3 26 26 H 1.09008 * 109.46722 * 60.00486 * 1 2 3 27 27 H 1.08006 * 119.40171 * 179.70009 * 5 4 3 28 28 H 1.08005 * 120.26992 * 180.02562 * 6 5 4 29 29 H 1.07996 * 120.82680 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.46830 * 64.90926 * 12 11 9 31 31 H 1.09005 * 109.47311 * 304.90968 * 12 11 9 32 32 H 0.97003 * 119.99986 * 355.11645 * 17 16 14 33 33 H 1.09002 * 117.50028 * 215.00804 * 22 13 12 34 34 H 1.09001 * 117.50260 * 0.02562 * 22 13 12 35 35 H 1.09000 * 117.49934 * 359.97438 * 23 13 12 36 36 H 1.09008 * 117.50085 * 144.97541 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2065 0.0000 4 7 1.3198 2.3130 0.0052 5 6 1.8772 3.5083 -0.0007 6 6 3.2527 3.6578 -0.0063 7 6 4.0592 2.5340 -0.0061 8 6 3.4455 1.2752 0.0003 9 6 4.2570 0.0449 0.0002 10 8 3.7163 -1.0396 -0.0904 11 8 5.5985 0.1225 0.1007 12 6 6.3416 -1.1191 -0.0198 13 6 7.8255 -0.8528 0.2408 14 6 8.4743 0.1576 -0.6699 15 1 8.5542 1.1896 -0.3616 16 6 8.9658 -0.2355 -1.8966 17 7 8.7700 -1.4651 -2.3201 18 14 9.9099 0.9784 -2.9571 19 1 10.3273 0.3140 -4.2179 20 1 9.0400 2.1394 -3.2745 21 1 11.1122 1.4470 -2.2223 22 6 8.3093 -0.9099 1.6911 23 6 8.6816 -2.0287 0.7151 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.2484 4.3865 -0.0011 28 1 3.6932 4.6439 -0.0107 29 1 5.1353 2.6251 -0.0108 30 1 6.2158 -1.5216 -1.0249 31 1 5.9680 -1.8384 0.7091 32 1 8.3423 -2.1152 -1.7410 33 1 9.0969 -0.2167 1.9866 34 1 7.5706 -1.1376 2.4596 35 1 8.1876 -2.9920 0.8419 36 1 9.7141 -2.0719 0.3682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091697326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:29 Heat of formation + Delta-G solvation = -60.811988 kcal Electronic energy + Delta-G solvation = -21247.439189 eV Core-core repulsion = 17891.350747 eV Total energy + Delta-G solvation = -3356.088442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.89935 -39.33883 -37.95902 -36.98215 -35.26713 -32.80401 -31.90514 -30.97242 -27.55446 -26.94392 -24.96420 -24.45296 -22.97976 -21.43609 -20.83818 -19.54101 -18.47409 -17.42504 -17.17986 -16.73155 -16.20329 -15.80719 -15.40696 -15.11111 -14.19605 -14.18240 -13.75186 -13.64155 -13.46274 -13.06959 -12.76847 -12.52236 -12.13278 -11.92361 -11.75004 -11.31834 -10.94712 -10.82331 -10.52049 -10.22626 -10.12507 -10.03192 -9.98442 -9.85345 -9.53461 -8.67053 -8.56074 -8.49208 -8.38301 -6.37386 -4.11222 0.57665 1.16817 2.87809 2.94694 3.19322 3.42132 3.43224 3.62392 3.76539 4.12826 4.49426 4.75127 4.78261 4.89360 5.08626 5.15348 5.21637 5.23789 5.29922 5.49211 5.53060 5.79244 5.84504 5.98010 6.06094 6.12697 6.26583 6.29922 6.44375 6.54048 6.78494 7.00597 7.11365 7.17218 7.26330 7.60009 8.18572 8.37684 8.39923 8.83863 9.62710 11.01611 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.005035 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.008694 B = 5559.506107 C = 6194.887106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.273 6.273 3 C 0.372 3.628 4 N -0.550 5.550 5 C 0.166 3.834 6 C -0.226 4.226 7 C 0.019 3.981 8 C -0.190 4.190 9 C 0.502 3.498 10 O -0.500 6.500 11 O -0.328 6.328 12 C 0.114 3.886 13 C 0.014 3.986 14 C -0.563 4.563 15 H 0.056 0.944 16 C 0.025 3.975 17 N -0.906 5.906 18 Si 1.068 2.932 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.287 1.287 22 C -0.191 4.191 23 C -0.168 4.168 24 H 0.098 0.902 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.165 0.835 28 H 0.146 0.854 29 H 0.162 0.838 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.273 0.727 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.831 8.633 5.133 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.177 6.177 3 C 0.192 3.808 4 N -0.275 5.275 5 C 0.009 3.991 6 C -0.246 4.246 7 C -0.006 4.006 8 C -0.195 4.195 9 C 0.345 3.655 10 O -0.390 6.390 11 O -0.244 6.244 12 C 0.041 3.959 13 C 0.013 3.987 14 C -0.601 4.601 15 H 0.074 0.926 16 C -0.180 4.180 17 N -0.541 5.541 18 Si 0.896 3.104 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.214 1.214 22 C -0.228 4.228 23 C -0.206 4.206 24 H 0.116 0.884 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.182 0.818 28 H 0.164 0.836 29 H 0.180 0.820 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.019 8.062 3.638 15.739 hybrid contribution -0.170 -0.151 1.502 1.519 sum -13.189 7.911 5.140 16.216 Atomic orbital electron populations 1.22949 0.77536 1.03256 1.02240 1.86534 1.22391 1.23131 1.85683 1.19831 0.87844 0.85248 0.87862 1.67489 1.40005 0.98584 1.21374 1.22675 0.93195 0.93632 0.89573 1.22009 0.94547 1.00173 1.07878 1.22009 1.02189 0.89760 0.86632 1.19310 0.90294 0.93863 1.15990 1.20618 0.82471 0.88305 0.74072 1.90831 1.73404 1.29362 1.45425 1.86574 1.17025 1.39167 1.81612 1.22877 0.91237 0.81245 1.00561 1.19068 0.88272 0.98058 0.93291 1.21181 1.40881 0.94574 1.03416 0.92584 1.25825 0.96066 0.99706 0.96448 1.70757 1.40971 1.04199 1.38143 0.83561 0.76137 0.74654 0.76061 1.20812 1.21402 1.21370 1.22913 1.03395 1.02717 0.93749 1.22790 1.01098 0.92197 1.04511 0.88404 0.92278 0.92215 0.81832 0.83627 0.82017 0.91504 0.93856 0.91576 0.89750 0.91314 0.91224 0.89126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.27 -4.53 8.59 -39.64 -0.34 -4.87 16 3 C 0.37 6.00 7.51 -16.59 -0.12 5.87 16 4 N -0.55 -7.38 9.21 -12.97 -0.12 -7.49 16 5 C 0.17 1.71 11.17 -17.48 -0.20 1.52 16 6 C -0.23 -2.37 10.09 -39.50 -0.40 -2.77 16 7 C 0.02 0.27 9.73 -38.87 -0.38 -0.11 16 8 C -0.19 -3.28 5.90 -104.71 -0.62 -3.90 16 9 C 0.50 10.54 7.88 34.45 0.27 10.82 16 10 O -0.50 -11.53 14.91 -26.55 -0.40 -11.93 16 11 O -0.33 -7.41 9.37 -40.64 -0.38 -7.79 16 12 C 0.11 2.73 5.37 37.16 0.20 2.93 16 13 C 0.01 0.34 1.22 -155.67 -0.19 0.15 16 14 C -0.56 -15.29 8.65 -34.44 -0.30 -15.59 16 15 H 0.06 1.52 7.82 -52.48 -0.41 1.11 16 16 C 0.02 0.69 5.39 -17.82 -0.10 0.59 16 17 N -0.91 -26.50 13.57 55.43 0.75 -25.75 16 18 Si 1.07 24.49 29.91 -169.99 -5.08 19.41 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 22 C -0.19 -4.12 9.94 -26.70 -0.27 -4.39 16 23 C -0.17 -3.82 8.66 -26.70 -0.23 -4.05 16 24 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 26 H 0.06 0.63 8.11 -51.92 -0.42 0.21 16 27 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 28 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 29 H 0.16 2.25 7.71 -52.49 -0.40 1.84 16 30 H 0.07 1.73 7.87 -51.93 -0.41 1.32 16 31 H 0.04 0.97 7.94 -51.93 -0.41 0.56 16 32 H 0.27 7.92 6.18 -40.82 -0.25 7.67 16 33 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.09 2.16 8.14 -51.92 -0.42 1.74 16 LS Contribution 319.31 15.07 4.81 4.81 Total: -1.00 -32.81 319.31 -6.52 -39.33 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -4.49 Total: 1.75 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.28 Total: -7.48 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.63 Total: -33.24 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -1.12 Total: -24.59 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.81 -6.52 -39.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091697326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.481 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds