Wall clock time and date at job start Mon Mar 30 2020 02:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35410 * 116.99959 * 2 1 4 4 N 1.32230 * 119.80580 * 0.26079 * 3 2 1 5 5 C 1.31885 * 121.80571 * 180.31544 * 4 3 2 6 6 C 1.38367 * 121.19936 * 359.68409 * 5 4 3 7 7 C 1.38321 * 119.46430 * 0.02562 * 6 5 4 8 8 C 1.40042 * 118.34379 * 359.97438 * 7 6 5 9 9 C 1.47384 * 120.60321 * 179.97438 * 8 7 6 10 10 O 1.21513 * 120.00290 * 185.24670 * 9 8 7 11 11 O 1.34756 * 120.00102 * 5.24422 * 9 8 7 12 12 C 1.45196 * 117.00221 * 185.08016 * 11 9 8 13 13 C 1.52998 * 109.47287 * 184.90737 * 12 11 9 14 14 C 1.50699 * 115.55000 * 301.66923 * 13 12 11 15 15 H 1.08004 * 119.99962 * 95.21980 * 14 13 12 16 16 C 1.37881 * 120.00226 * 275.22063 * 14 13 12 17 17 N 1.31512 * 119.99661 * 5.68299 * 16 14 13 18 18 Si 1.86799 * 119.99992 * 185.68064 * 16 14 13 19 19 H 1.48502 * 109.46717 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.47321 * 299.99785 * 18 16 14 21 21 H 1.48497 * 109.47151 * 60.00204 * 18 16 14 22 22 C 1.52996 * 117.49853 * 87.33918 * 13 12 11 23 23 C 1.52997 * 117.49934 * 155.99650 * 13 12 11 24 24 H 1.08995 * 109.46958 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47148 * 300.00746 * 1 2 3 26 26 H 1.09008 * 109.46722 * 60.00486 * 1 2 3 27 27 H 1.08006 * 119.40171 * 179.70009 * 5 4 3 28 28 H 1.08005 * 120.26992 * 180.02562 * 6 5 4 29 29 H 1.07996 * 120.82680 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.46830 * 64.90926 * 12 11 9 31 31 H 1.09005 * 109.47311 * 304.90968 * 12 11 9 32 32 H 0.97003 * 119.99986 * 355.11645 * 17 16 14 33 33 H 1.09002 * 117.50028 * 215.00804 * 22 13 12 34 34 H 1.09001 * 117.50260 * 0.02562 * 22 13 12 35 35 H 1.09000 * 117.49934 * 359.97438 * 23 13 12 36 36 H 1.09008 * 117.50085 * 144.97541 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2065 0.0000 4 7 1.3198 2.3130 0.0052 5 6 1.8772 3.5083 -0.0007 6 6 3.2527 3.6578 -0.0063 7 6 4.0592 2.5340 -0.0061 8 6 3.4455 1.2752 0.0003 9 6 4.2570 0.0449 0.0002 10 8 3.7163 -1.0396 -0.0904 11 8 5.5985 0.1225 0.1007 12 6 6.3416 -1.1191 -0.0198 13 6 7.8255 -0.8528 0.2408 14 6 8.4743 0.1576 -0.6699 15 1 8.5542 1.1896 -0.3616 16 6 8.9658 -0.2355 -1.8966 17 7 8.7700 -1.4651 -2.3201 18 14 9.9099 0.9784 -2.9571 19 1 10.3273 0.3140 -4.2179 20 1 9.0400 2.1394 -3.2745 21 1 11.1122 1.4470 -2.2223 22 6 8.3093 -0.9099 1.6911 23 6 8.6816 -2.0287 0.7151 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.2484 4.3865 -0.0011 28 1 3.6932 4.6439 -0.0107 29 1 5.1353 2.6251 -0.0108 30 1 6.2158 -1.5216 -1.0249 31 1 5.9680 -1.8384 0.7091 32 1 8.3423 -2.1152 -1.7410 33 1 9.0969 -0.2167 1.9866 34 1 7.5706 -1.1376 2.4596 35 1 8.1876 -2.9920 0.8419 36 1 9.7141 -2.0719 0.3682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091697326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:29 Heat of formation + Delta-G solvation = -81.520799 kcal Electronic energy + Delta-G solvation = -21248.337190 eV Core-core repulsion = 17891.350747 eV Total energy + Delta-G solvation = -3356.986443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.08712 -40.90530 -39.02117 -38.81774 -37.02331 -33.99967 -33.88808 -32.00118 -29.00945 -28.20577 -26.96765 -25.77795 -24.03376 -23.19577 -22.31613 -21.50720 -19.56096 -18.91035 -18.84063 -18.16407 -17.51428 -17.33644 -16.92999 -16.11340 -15.86376 -15.60290 -15.18836 -15.11560 -14.69541 -14.57849 -14.37927 -13.91519 -13.81466 -13.48896 -12.89665 -12.74286 -12.63207 -12.29323 -12.27037 -11.93813 -11.81472 -11.78268 -11.45951 -11.14006 -10.87467 -10.51803 -10.47793 -10.37489 -9.70359 -8.55054 -6.29068 -0.54629 0.15103 1.42942 1.56174 1.60013 1.63871 1.82592 1.96416 2.60088 2.66076 3.11297 3.21093 3.24340 3.60881 3.76328 3.90524 3.95900 4.12778 4.17739 4.26722 4.35023 4.37005 4.40243 4.45296 4.63211 4.67491 4.77075 4.88942 4.95243 5.05449 5.17165 5.35801 5.38616 5.49745 6.09740 6.13564 6.22838 6.59203 6.65722 6.73333 7.52480 8.84855 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.005035 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.008694 B = 5559.506107 C = 6194.887106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.307 6.307 3 C 0.362 3.638 4 N -0.552 5.552 5 C 0.181 3.819 6 C -0.206 4.206 7 C 0.012 3.988 8 C -0.229 4.229 9 C 0.498 3.502 10 O -0.533 6.533 11 O -0.337 6.337 12 C 0.126 3.874 13 C -0.022 4.022 14 C -0.569 4.569 15 H 0.050 0.950 16 C -0.022 4.022 17 N -0.934 5.934 18 Si 1.111 2.889 19 H -0.289 1.289 20 H -0.272 1.272 21 H -0.268 1.268 22 C -0.165 4.165 23 C -0.165 4.165 24 H 0.113 0.887 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.217 0.783 28 H 0.189 0.811 29 H 0.156 0.844 30 H 0.034 0.966 31 H 0.051 0.949 32 H 0.262 0.738 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.803 11.648 5.809 18.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.212 6.212 3 C 0.183 3.817 4 N -0.277 5.277 5 C 0.025 3.975 6 C -0.226 4.226 7 C -0.013 4.013 8 C -0.233 4.233 9 C 0.344 3.656 10 O -0.425 6.425 11 O -0.252 6.252 12 C 0.052 3.948 13 C -0.022 4.022 14 C -0.607 4.607 15 H 0.069 0.931 16 C -0.222 4.222 17 N -0.571 5.571 18 Si 0.933 3.067 19 H -0.215 1.215 20 H -0.197 1.197 21 H -0.193 1.193 22 C -0.202 4.202 23 C -0.203 4.203 24 H 0.132 0.868 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.233 0.767 28 H 0.206 0.794 29 H 0.174 0.826 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.006 11.088 4.344 18.384 hybrid contribution -0.002 -0.972 1.340 1.655 sum -14.008 10.116 5.684 18.190 Atomic orbital electron populations 1.23196 0.75325 1.04688 1.03073 1.86480 1.24833 1.24177 1.85726 1.19917 0.87544 0.86002 0.88255 1.67642 1.39631 0.98832 1.21610 1.23641 0.93969 0.93925 0.86009 1.22455 0.94342 1.00614 1.05165 1.22111 1.02434 0.89812 0.86992 1.19270 0.90637 0.93200 1.20200 1.21392 0.81807 0.89610 0.72832 1.90790 1.73549 1.30922 1.47228 1.86574 1.18250 1.38366 1.82045 1.22550 0.91367 0.82075 0.98827 1.19160 0.88573 0.99148 0.95323 1.21440 1.40416 0.94863 1.03945 0.93140 1.27151 0.96514 1.00401 0.98089 1.70863 1.42732 1.05058 1.38423 0.83017 0.75924 0.73246 0.74520 1.21462 1.19691 1.19318 1.22940 1.03245 1.01466 0.92535 1.22733 0.99970 0.92897 1.04652 0.86829 0.91189 0.91474 0.76670 0.79364 0.82629 0.94782 0.93032 0.92726 0.89172 0.89028 0.89670 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.38 113.37 1.18 1.87 16 2 O -0.31 -10.34 8.59 -66.28 -0.57 -10.91 16 3 C 0.36 11.54 7.51 85.15 0.64 12.18 16 4 N -0.55 -13.42 9.21 -307.96 -2.84 -16.26 16 5 C 0.18 2.92 11.17 84.72 0.95 3.87 16 6 C -0.21 -3.50 10.09 22.32 0.23 -3.27 16 7 C 0.01 0.32 9.73 22.73 0.22 0.54 16 8 C -0.23 -7.97 5.90 -19.92 -0.12 -8.09 16 9 C 0.50 21.82 7.88 70.23 0.55 22.38 16 10 O -0.53 -25.88 14.91 26.75 0.40 -25.48 16 11 O -0.34 -15.76 9.37 -56.67 -0.53 -16.29 16 12 C 0.13 6.23 5.37 71.98 0.39 6.62 16 13 C -0.02 -1.08 1.22 -52.93 -0.06 -1.14 16 14 C -0.57 -31.29 8.65 25.60 0.22 -31.07 16 15 H 0.05 2.76 7.82 -2.91 -0.02 2.73 16 16 C -0.02 -1.25 5.39 84.66 0.46 -0.79 16 17 N -0.93 -56.14 13.57 21.45 0.29 -55.85 16 18 Si 1.11 49.26 29.91 68.60 2.05 51.31 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 22 C -0.16 -6.97 9.94 30.61 0.30 -6.67 16 23 C -0.16 -7.53 8.66 30.62 0.27 -7.27 16 24 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 26 H 0.07 1.35 8.11 -2.38 -0.02 1.33 16 27 H 0.22 1.25 8.06 -2.91 -0.02 1.23 16 28 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 29 H 0.16 4.27 7.71 -2.91 -0.02 4.25 16 30 H 0.03 1.87 7.87 -2.39 -0.02 1.85 16 31 H 0.05 2.40 7.94 -2.38 -0.02 2.38 16 32 H 0.26 15.84 6.18 -92.71 -0.57 15.27 16 33 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 34 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 35 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.07 3.63 8.14 -2.38 -0.02 3.61 16 Total: -1.00 -74.46 319.31 5.30 -69.15 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 1.28 Total: 15.17 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 5.21 Total: -10.85 kcal Atomic # 7 Polarization: -69.56 SS G_CDS: -2.54 Total: -72.10 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -0.70 Total: -52.68 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.05 Total: 51.31 kcal Total: -74.46 5.30 -69.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091697326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.366 kcal (2) G-P(sol) polarization free energy of solvation -74.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds