Wall clock time and date at job start Mon Mar 30 2020 01:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.51705 * 2 1 4 4 C 1.53304 * 109.51398 * 239.89285 * 2 1 3 5 5 N 1.47148 * 108.38548 * 187.77504 * 4 2 1 6 6 S 1.65599 * 120.98109 * 230.56135 * 5 4 2 7 7 O 1.42098 * 104.27918 * 26.04398 * 6 5 4 8 8 O 1.42098 * 104.27550 * 153.90678 * 6 5 4 9 9 C 1.81400 * 104.44725 * 269.97711 * 6 5 4 10 10 C 1.52999 * 109.47185 * 180.02562 * 9 6 5 11 11 C 1.50700 * 109.47188 * 180.02562 * 10 9 6 12 12 H 1.08004 * 120.00228 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00076 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99757 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00173 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46977 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47307 * 119.99916 * 15 13 11 18 18 H 1.48508 * 109.47095 * 240.00354 * 15 13 11 19 19 C 1.47153 * 118.03727 * 50.53660 * 5 4 2 20 20 C 1.53297 * 108.38585 * 309.46622 * 19 5 4 21 21 H 1.09007 * 109.51340 * 292.32730 * 20 19 5 22 22 C 1.52997 * 109.51529 * 172.22460 * 20 19 5 23 23 O 1.42962 * 109.51046 * 120.09739 * 2 1 3 24 24 H 1.09002 * 109.46856 * 180.10499 * 1 2 3 25 25 H 1.09001 * 109.47215 * 300.10592 * 1 2 3 26 26 H 1.08997 * 109.47127 * 60.10471 * 1 2 3 27 27 H 1.09001 * 109.67857 * 68.05378 * 4 2 1 28 28 H 1.09002 * 109.70971 * 307.51810 * 4 2 1 29 29 H 1.09006 * 109.47328 * 299.99978 * 9 6 5 30 30 H 1.09003 * 109.47275 * 60.00054 * 9 6 5 31 31 H 1.08999 * 109.46663 * 299.99627 * 10 9 6 32 32 H 1.09003 * 109.47301 * 59.99665 * 10 9 6 33 33 H 0.96998 * 119.99627 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.68223 * 189.74119 * 19 5 4 35 35 H 1.09002 * 109.67766 * 69.18617 * 19 5 4 36 36 H 1.09002 * 109.47153 * 60.09941 * 22 20 19 37 37 H 1.09001 * 109.46832 * 300.10131 * 22 20 19 38 38 H 1.09004 * 109.47261 * 180.10113 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0421 -0.7248 -1.2500 5 7 3.5012 -0.8759 -1.1339 6 16 4.5065 -0.4173 -2.3673 7 8 3.7777 0.5883 -3.0580 8 8 5.7374 -0.1183 -1.7234 9 6 4.6699 -1.9036 -3.3944 10 6 5.5872 -1.6046 -4.5819 11 6 5.7224 -2.8392 -5.4354 12 1 5.2062 -3.7465 -5.1584 13 6 6.5053 -2.8105 -6.5701 14 7 7.1336 -1.7055 -6.9077 15 14 6.6735 -4.3410 -7.6277 16 1 5.8735 -5.4427 -7.0349 17 1 6.1802 -4.0523 -8.9983 18 1 8.1013 -4.7450 -7.6903 19 6 4.0407 -1.4459 0.1108 20 6 3.4313 -0.6861 1.2946 21 1 3.8037 0.3384 1.3002 22 6 3.8212 -1.3788 2.6018 23 8 2.0075 -0.6757 1.1658 24 1 -0.3633 -1.0277 0.0019 25 1 -0.3634 0.5155 0.8890 26 1 -0.3633 0.5122 -0.8909 27 1 1.8031 -0.1391 -2.1377 28 1 1.5758 -1.7075 -1.3221 29 1 5.0974 -2.7110 -2.7998 30 1 3.6875 -2.2025 -3.7599 31 1 5.1600 -0.7972 -5.1766 32 1 6.5696 -1.3059 -4.2160 33 1 7.6840 -1.6852 -7.7061 34 1 5.1251 -1.3378 0.1243 35 1 3.7756 -2.5012 0.1763 36 1 4.9069 -1.3878 2.6985 37 1 3.4484 -2.4031 2.5954 38 1 3.3860 -0.8390 3.4429 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104104175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:58 Heat of formation + Delta-G solvation = -128.800601 kcal Electronic energy + Delta-G solvation = -20503.915115 eV Core-core repulsion = 17280.322417 eV Total energy + Delta-G solvation = -3223.592698 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.59898 -36.74845 -35.53983 -34.79346 -33.91635 -33.91614 -31.18643 -30.26835 -27.08363 -25.70833 -25.01351 -22.15483 -21.59092 -20.94737 -18.59117 -17.67292 -16.89431 -16.59741 -16.12880 -15.63314 -15.30596 -14.83324 -14.57872 -14.37721 -14.18191 -13.46739 -13.08581 -12.81066 -12.54061 -12.42335 -12.31800 -12.18061 -11.85667 -11.81017 -11.78601 -11.65071 -11.32568 -11.15471 -11.11030 -10.99023 -10.56767 -10.42126 -10.40817 -10.18519 -9.77032 -9.29930 -8.67769 -8.53059 -6.14918 -4.20612 0.67593 2.90413 3.23770 3.31086 3.34585 3.48956 4.23488 4.35908 4.38439 4.64111 4.66445 4.86881 4.87935 5.00883 5.10569 5.20378 5.26003 5.28827 5.40021 5.54278 5.54862 5.59495 5.64429 5.72241 5.75972 5.79501 5.91026 6.00661 6.12133 6.45127 6.51616 7.09546 7.26621 7.32375 7.78300 8.14739 8.83035 9.44418 10.96168 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029585 B = 0.004335 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.192646 B = 6456.773404 C = 6601.431554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.077 3.923 3 H 0.063 0.937 4 C 0.088 3.912 5 N -1.011 6.011 6 S 2.588 3.412 7 O -0.963 6.963 8 O -0.963 6.963 9 C -0.587 4.587 10 C 0.027 3.973 11 C -0.520 4.520 12 H 0.062 0.938 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.088 3.912 20 C 0.077 3.923 21 H 0.063 0.937 22 C -0.143 4.143 23 O -0.376 6.376 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.764 0.717 16.186 19.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.018 3.982 3 H 0.081 0.919 4 C -0.038 4.038 5 N -0.847 5.847 6 S 2.688 3.312 7 O -0.953 6.953 8 O -0.953 6.953 9 C -0.720 4.720 10 C -0.012 4.012 11 C -0.560 4.560 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.528 5.528 15 Si 0.728 3.272 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.038 4.038 20 C 0.018 3.982 21 H 0.081 0.919 22 C -0.201 4.201 23 O -0.295 6.295 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.138 0.862 30 H 0.138 0.862 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.392 1.598 16.107 19.235 hybrid contribution 0.186 -1.362 -0.994 1.696 sum -10.206 0.236 15.113 18.238 Atomic orbital electron populations 1.21739 0.92361 1.03168 1.02814 1.22394 0.95210 0.95470 0.85114 0.91883 1.22151 0.79888 1.01806 0.99924 1.58098 1.16609 1.80225 1.29747 1.05780 0.73258 0.78012 0.74127 1.93525 1.72138 1.55473 1.74189 1.93525 1.44125 1.83905 1.73769 1.30477 1.10256 1.17977 1.13319 1.18981 0.93196 0.99315 0.89679 1.21039 1.29845 0.96737 1.08334 0.91985 1.25073 0.95290 0.96530 0.97588 1.69967 1.30638 1.26585 1.25658 0.86406 0.77996 0.82680 0.80161 1.19639 1.20759 1.20764 1.22151 1.00107 0.97965 0.83541 1.22395 0.81539 0.99312 0.94947 0.91884 1.21740 1.01742 1.01253 0.95348 1.87907 1.20784 1.77682 1.43154 0.91557 0.91615 0.90600 0.87803 0.90695 0.86234 0.86233 0.94846 0.94844 0.92556 0.87799 0.90695 0.90600 0.91559 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.57 37.16 0.36 -0.87 16 2 C 0.08 0.88 3.40 -26.57 -0.09 0.79 16 3 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 4 C 0.09 1.08 5.96 -3.53 -0.02 1.06 16 5 N -1.01 -14.36 3.27 -113.06 -0.37 -14.73 16 6 S 2.59 47.06 5.47 -107.50 -0.59 46.47 16 7 O -0.96 -19.81 16.62 -57.54 -0.96 -20.77 16 8 O -0.96 -19.81 16.62 -57.54 -0.96 -20.77 16 9 C -0.59 -11.31 6.12 37.16 0.23 -11.09 16 10 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 11 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 12 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 15 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.09 1.08 5.96 -3.53 -0.02 1.06 16 20 C 0.08 0.88 3.40 -26.58 -0.09 0.79 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 22 C -0.14 -1.23 9.57 37.16 0.36 -0.87 16 23 O -0.38 -4.55 10.03 -35.23 -0.35 -4.91 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.10 1.29 6.88 -51.93 -0.36 0.93 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 30 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.10 1.29 6.88 -51.93 -0.36 0.93 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 323.46 15.07 4.87 4.87 Total: -1.00 -34.12 323.46 -8.64 -42.76 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -6.17 Total: -1.61 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 0.17 Total: -21.75 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 0.37 Total: -40.44 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -2.27 Total: -46.44 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 47.06 SS G_CDS: -0.59 Total: 46.47 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.12 -8.64 -42.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104104175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.037 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds