Wall clock time and date at job start Mon Mar 30 2020 01:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.51705 * 2 1 4 4 C 1.53304 * 109.51398 * 239.89285 * 2 1 3 5 5 N 1.47148 * 108.38548 * 187.77504 * 4 2 1 6 6 S 1.65599 * 120.98109 * 230.56135 * 5 4 2 7 7 O 1.42098 * 104.27918 * 26.04398 * 6 5 4 8 8 O 1.42098 * 104.27550 * 153.90678 * 6 5 4 9 9 C 1.81400 * 104.44725 * 269.97711 * 6 5 4 10 10 C 1.52999 * 109.47185 * 180.02562 * 9 6 5 11 11 C 1.50700 * 109.47188 * 180.02562 * 10 9 6 12 12 H 1.08004 * 120.00228 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00076 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99757 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00173 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46977 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47307 * 119.99916 * 15 13 11 18 18 H 1.48508 * 109.47095 * 240.00354 * 15 13 11 19 19 C 1.47153 * 118.03727 * 50.53660 * 5 4 2 20 20 C 1.53297 * 108.38585 * 309.46622 * 19 5 4 21 21 H 1.09007 * 109.51340 * 292.32730 * 20 19 5 22 22 C 1.52997 * 109.51529 * 172.22460 * 20 19 5 23 23 O 1.42962 * 109.51046 * 120.09739 * 2 1 3 24 24 H 1.09002 * 109.46856 * 180.10499 * 1 2 3 25 25 H 1.09001 * 109.47215 * 300.10592 * 1 2 3 26 26 H 1.08997 * 109.47127 * 60.10471 * 1 2 3 27 27 H 1.09001 * 109.67857 * 68.05378 * 4 2 1 28 28 H 1.09002 * 109.70971 * 307.51810 * 4 2 1 29 29 H 1.09006 * 109.47328 * 299.99978 * 9 6 5 30 30 H 1.09003 * 109.47275 * 60.00054 * 9 6 5 31 31 H 1.08999 * 109.46663 * 299.99627 * 10 9 6 32 32 H 1.09003 * 109.47301 * 59.99665 * 10 9 6 33 33 H 0.96998 * 119.99627 * 180.02562 * 14 13 11 34 34 H 1.08994 * 109.68223 * 189.74119 * 19 5 4 35 35 H 1.09002 * 109.67766 * 69.18617 * 19 5 4 36 36 H 1.09002 * 109.47153 * 60.09941 * 22 20 19 37 37 H 1.09001 * 109.46832 * 300.10131 * 22 20 19 38 38 H 1.09004 * 109.47261 * 180.10113 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0421 -0.7248 -1.2500 5 7 3.5012 -0.8759 -1.1339 6 16 4.5065 -0.4173 -2.3673 7 8 3.7777 0.5883 -3.0580 8 8 5.7374 -0.1183 -1.7234 9 6 4.6699 -1.9036 -3.3944 10 6 5.5872 -1.6046 -4.5819 11 6 5.7224 -2.8392 -5.4354 12 1 5.2062 -3.7465 -5.1584 13 6 6.5053 -2.8105 -6.5701 14 7 7.1336 -1.7055 -6.9077 15 14 6.6735 -4.3410 -7.6277 16 1 5.8735 -5.4427 -7.0349 17 1 6.1802 -4.0523 -8.9983 18 1 8.1013 -4.7450 -7.6903 19 6 4.0407 -1.4459 0.1108 20 6 3.4313 -0.6861 1.2946 21 1 3.8037 0.3384 1.3002 22 6 3.8212 -1.3788 2.6018 23 8 2.0075 -0.6757 1.1658 24 1 -0.3633 -1.0277 0.0019 25 1 -0.3634 0.5155 0.8890 26 1 -0.3633 0.5122 -0.8909 27 1 1.8031 -0.1391 -2.1377 28 1 1.5758 -1.7075 -1.3221 29 1 5.0974 -2.7110 -2.7998 30 1 3.6875 -2.2025 -3.7599 31 1 5.1600 -0.7972 -5.1766 32 1 6.5696 -1.3059 -4.2160 33 1 7.6840 -1.6852 -7.7061 34 1 5.1251 -1.3378 0.1243 35 1 3.7756 -2.5012 0.1763 36 1 4.9069 -1.3878 2.6985 37 1 3.4484 -2.4031 2.5954 38 1 3.3860 -0.8390 3.4429 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104104175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:58 Heat of formation + Delta-G solvation = -153.804404 kcal Electronic energy + Delta-G solvation = -20504.999361 eV Core-core repulsion = 17280.322417 eV Total energy + Delta-G solvation = -3224.676944 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52979 -38.31802 -37.10703 -35.94232 -35.84448 -34.74908 -33.15554 -31.06831 -27.96055 -27.64386 -26.06868 -23.50394 -22.98115 -21.90482 -19.95929 -19.18451 -18.42474 -17.86601 -17.30236 -17.14424 -16.58994 -16.33548 -16.13480 -15.26611 -15.23680 -15.15986 -14.47641 -13.96973 -13.76213 -13.52227 -13.46343 -13.43057 -13.26340 -12.96934 -12.92678 -12.84699 -12.81118 -12.62168 -12.59004 -12.29333 -12.13636 -11.96739 -11.79964 -11.45909 -11.26013 -11.05773 -10.67439 -9.79046 -8.28049 -6.42443 -0.80668 1.40407 1.40903 1.54291 1.60595 2.36786 2.65511 2.77546 3.05085 3.07018 3.57262 3.68062 3.97258 3.98930 4.05796 4.05939 4.15847 4.29552 4.38073 4.41354 4.69813 4.70943 4.75949 4.76716 4.88155 4.99991 5.00876 5.16552 5.21356 5.23857 5.25691 5.36810 5.46315 5.66188 6.03592 6.21375 6.71265 7.28128 8.84466 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.029585 B = 0.004335 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.192646 B = 6456.773404 C = 6601.431554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.073 3.927 3 H 0.052 0.948 4 C 0.079 3.921 5 N -1.003 6.003 6 S 2.612 3.388 7 O -0.990 6.990 8 O -0.990 6.990 9 C -0.585 4.585 10 C 0.020 3.980 11 C -0.539 4.539 12 H 0.075 0.925 13 C -0.003 4.003 14 N -0.934 5.934 15 Si 0.975 3.025 16 H -0.256 1.256 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.079 3.921 20 C 0.073 3.927 21 H 0.052 0.948 22 C -0.138 4.138 23 O -0.380 6.380 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.007 0.993 32 H 0.007 0.993 33 H 0.268 0.732 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.172 -1.226 17.224 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.014 3.986 3 H 0.070 0.930 4 C -0.045 4.045 5 N -0.842 5.842 6 S 2.711 3.289 7 O -0.981 6.981 8 O -0.981 6.981 9 C -0.717 4.717 10 C -0.019 4.019 11 C -0.578 4.578 12 H 0.093 0.907 13 C -0.202 4.202 14 N -0.574 5.574 15 Si 0.799 3.201 16 H -0.179 1.179 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.045 4.045 20 C 0.014 3.986 21 H 0.070 0.930 22 C -0.196 4.196 23 O -0.299 6.299 24 H 0.092 0.908 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.092 0.908 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.804 -0.354 17.147 20.820 hybrid contribution 0.585 -0.709 -1.235 1.539 sum -11.219 -1.063 15.912 19.499 Atomic orbital electron populations 1.21745 0.90102 1.03982 1.03738 1.22517 0.96952 0.94664 0.84471 0.93007 1.22451 0.78398 1.03290 1.00409 1.57747 1.17170 1.80211 1.29037 1.04799 0.72813 0.77210 0.74089 1.93481 1.72651 1.56560 1.75383 1.93481 1.46056 1.84232 1.74306 1.30371 1.10004 1.19704 1.11611 1.18837 0.93178 0.98152 0.91725 1.21535 1.29772 0.97722 1.08792 0.90654 1.26122 0.94838 0.99973 0.99226 1.70109 1.31643 1.29161 1.26475 0.85247 0.78215 0.78631 0.78047 1.17948 1.20297 1.20308 1.22450 1.00075 0.99342 0.82677 1.22518 0.81271 0.98995 0.95826 0.93009 1.21745 1.02612 1.01373 0.93837 1.87917 1.21055 1.77633 1.43339 0.90759 0.91015 0.89416 0.88202 0.88366 0.84103 0.84103 0.97514 0.97508 0.92340 0.88196 0.88366 0.89416 0.90760 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.57 71.98 0.69 -1.36 16 2 C 0.07 1.54 3.40 30.70 0.10 1.65 16 3 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 4 C 0.08 1.81 5.96 86.36 0.51 2.32 16 5 N -1.00 -27.19 3.27 -511.61 -1.67 -28.86 16 6 S 2.61 95.17 5.47 -56.49 -0.31 94.86 16 7 O -0.99 -41.39 16.62 -127.65 -2.12 -43.51 16 8 O -0.99 -41.39 16.62 -127.65 -2.12 -43.51 16 9 C -0.58 -22.26 6.12 71.98 0.44 -21.82 16 10 C 0.02 1.05 4.98 29.85 0.15 1.20 16 11 C -0.54 -29.91 9.11 25.60 0.23 -29.67 16 12 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 13 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 14 N -0.93 -56.81 13.29 21.45 0.28 -56.52 16 15 Si 0.98 43.11 29.54 68.60 2.03 45.14 16 16 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 17 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 18 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 19 C 0.08 1.81 5.96 86.35 0.51 2.32 16 20 C 0.07 1.54 3.40 30.69 0.10 1.64 16 21 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 22 C -0.14 -2.05 9.57 71.98 0.69 -1.36 16 23 O -0.38 -8.41 10.03 -148.98 -1.49 -9.90 16 24 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 2.36 6.88 -2.39 -0.02 2.35 16 28 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 29 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 30 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 31 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.10 2.36 6.88 -2.39 -0.02 2.35 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 Total: -1.00 -74.11 323.46 -0.49 -74.59 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.02 Total: 12.51 kcal Atomic # 6 Polarization: -48.69 SS G_CDS: 3.90 Total: -44.79 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -1.39 Total: -85.38 kcal Atomic # 8 Polarization: -91.18 SS G_CDS: -5.74 Total: -96.92 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 95.17 SS G_CDS: -0.31 Total: 94.86 kcal Total: -74.11 -0.49 -74.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104104175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.213 kcal (2) G-P(sol) polarization free energy of solvation -74.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds