Wall clock time and date at job start Mon Mar 30 2020 01:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.50841 * 2 1 4 4 C 1.52877 * 109.62804 * 240.00541 * 2 1 3 5 5 N 1.47150 * 108.60761 * 187.89907 * 4 2 1 6 6 S 1.65600 * 120.97975 * 230.49985 * 5 4 2 7 7 O 1.42099 * 104.27906 * 153.64467 * 6 5 4 8 8 O 1.42101 * 104.27759 * 25.78703 * 6 5 4 9 9 C 1.81396 * 104.45054 * 269.71687 * 6 5 4 10 10 C 1.52996 * 109.47320 * 179.97438 * 9 6 5 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 6 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.46983 * 120.00379 * 15 13 11 18 18 H 1.48503 * 109.47491 * 240.00192 * 15 13 11 19 19 C 1.47150 * 118.03580 * 50.22606 * 5 4 2 20 20 H 1.09006 * 109.67642 * 189.95653 * 19 5 4 21 21 C 1.52994 * 109.68359 * 69.44157 * 19 5 4 22 22 C 1.53292 * 108.38622 * 309.71278 * 19 5 4 23 23 O 1.42967 * 109.50941 * 120.09561 * 2 1 3 24 24 H 1.08995 * 109.47261 * 299.89982 * 1 2 3 25 25 H 1.08995 * 109.47195 * 59.90661 * 1 2 3 26 26 H 1.09003 * 109.46756 * 179.90205 * 1 2 3 27 27 H 1.09001 * 109.61609 * 68.07344 * 4 2 1 28 28 H 1.09007 * 109.52104 * 307.66340 * 4 2 1 29 29 H 1.09004 * 109.46947 * 59.99849 * 9 6 5 30 30 H 1.09000 * 109.47486 * 300.00277 * 9 6 5 31 31 H 1.09004 * 109.47066 * 60.00127 * 10 9 6 32 32 H 1.08994 * 109.47405 * 299.99958 * 10 9 6 33 33 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 34 34 H 1.09006 * 109.47172 * 59.99508 * 21 19 5 35 35 H 1.09007 * 109.47242 * 179.97438 * 21 19 5 36 36 H 1.08998 * 109.47066 * 300.00096 * 21 19 5 37 37 H 1.08995 * 109.51316 * 172.22912 * 22 19 5 38 38 H 1.08995 * 109.51603 * 292.38321 * 22 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0436 -0.7199 -1.2471 5 7 3.5024 -0.8750 -1.1324 6 16 4.5079 -0.4164 -2.3657 7 8 5.7383 -0.1160 -1.7214 8 8 3.7787 0.5883 -3.0573 9 6 4.6730 -1.9031 -3.3918 10 6 5.5895 -1.6038 -4.5797 11 6 5.7272 -2.8392 -5.4317 12 1 5.2121 -3.7469 -5.1540 13 6 6.5057 -2.8088 -6.5694 14 7 7.1326 -1.7033 -6.9077 15 14 6.6701 -4.3378 -7.6296 16 1 5.8716 -5.4401 -7.0360 17 1 6.1716 -4.0473 -8.9980 18 1 8.0976 -4.7416 -7.6983 19 6 4.0417 -1.4439 0.1129 20 1 5.1262 -1.3354 0.1264 21 6 3.6708 -2.9253 0.2056 22 6 3.4312 -0.6838 1.2958 23 8 2.0075 -0.6757 1.1659 24 1 -0.3633 0.5122 0.8908 25 1 -0.3633 0.5153 -0.8891 26 1 -0.3633 -1.0277 -0.0018 27 1 1.8054 -0.1316 -2.1333 28 1 1.5746 -1.7012 -1.3203 29 1 3.6909 -2.2030 -3.7575 30 1 5.1008 -2.7098 -2.7965 31 1 6.5716 -1.3036 -4.2143 32 1 5.1613 -0.7974 -5.1749 33 1 7.6807 -1.6821 -7.7079 34 1 4.0905 -3.4590 -0.6472 35 1 4.0722 -3.3433 1.1288 36 1 2.5858 -3.0292 0.2009 37 1 3.7090 -1.1765 2.2275 38 1 3.8021 0.3411 1.3005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104110873.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:53 Heat of formation + Delta-G solvation = -127.592686 kcal Electronic energy + Delta-G solvation = -20777.514421 eV Core-core repulsion = 17553.974102 eV Total energy + Delta-G solvation = -3223.540319 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.70601 -36.75174 -35.54326 -35.15034 -33.91899 -33.41727 -31.18705 -30.01160 -26.45203 -26.05615 -25.52529 -22.64422 -21.60778 -20.33031 -18.49293 -17.78493 -16.78337 -16.62870 -15.89515 -15.59954 -15.31943 -14.89983 -14.75319 -14.54687 -13.95022 -13.49231 -13.31899 -12.57418 -12.50964 -12.47483 -12.39513 -12.04810 -11.87195 -11.77646 -11.65723 -11.64325 -11.23586 -11.14851 -11.10993 -10.98273 -10.54770 -10.41734 -10.39028 -10.12692 -9.76874 -9.29363 -8.68204 -8.52947 -6.14805 -4.20425 0.68694 2.89966 3.23725 3.31078 3.34517 3.59862 4.24029 4.36011 4.41576 4.58631 4.68439 4.87722 4.97113 5.00372 5.16523 5.20507 5.23296 5.43042 5.44821 5.50017 5.53958 5.59628 5.63599 5.71517 5.79077 5.83379 5.94597 6.10714 6.24216 6.46371 6.57955 7.05077 7.26925 7.32679 7.78412 8.14957 8.83211 9.44564 10.96295 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030226 B = 0.004588 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.141114 B = 6102.047775 C = 6168.991542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.076 3.924 3 H 0.063 0.937 4 C 0.088 3.912 5 N -1.005 6.005 6 S 2.588 3.412 7 O -0.963 6.963 8 O -0.963 6.963 9 C -0.586 4.586 10 C 0.028 3.972 11 C -0.520 4.520 12 H 0.062 0.938 13 C 0.058 3.942 14 N -0.890 5.890 15 Si 0.900 3.100 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.108 3.892 20 H 0.111 0.889 21 C -0.161 4.161 22 C 0.059 3.941 23 O -0.376 6.376 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.265 0.735 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.989 0.300 15.505 19.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.017 3.983 3 H 0.081 0.919 4 C -0.037 4.037 5 N -0.841 5.841 6 S 2.688 3.312 7 O -0.954 6.954 8 O -0.954 6.954 9 C -0.720 4.720 10 C -0.011 4.011 11 C -0.559 4.559 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.529 5.529 15 Si 0.727 3.273 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.002 3.998 20 H 0.129 0.871 21 C -0.220 4.220 22 C -0.019 4.019 23 O -0.294 6.294 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.121 0.879 28 H 0.093 0.907 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.624 1.192 15.423 18.766 hybrid contribution 0.235 -1.371 -0.990 1.708 sum -10.390 -0.179 14.432 17.784 Atomic orbital electron populations 1.21735 0.92413 1.03134 1.02803 1.22330 0.95202 0.95509 0.85282 0.91905 1.22035 0.80063 1.01745 0.99890 1.58174 1.16545 1.79771 1.29651 1.05766 0.73277 0.77993 0.74133 1.93523 1.44199 1.83887 1.73774 1.93525 1.72143 1.55549 1.74169 1.30485 1.10227 1.17996 1.13299 1.18975 0.93194 0.99286 0.89688 1.21037 1.30007 0.96664 1.08206 0.91993 1.25072 0.95308 0.96506 0.97589 1.69967 1.30763 1.26562 1.25562 0.86410 0.77991 0.82683 0.80182 1.19643 1.20772 1.20762 1.21686 0.99877 0.93888 0.84368 0.87128 1.22103 1.02885 0.94622 1.02353 1.22887 0.81263 0.99955 0.97805 1.87908 1.20822 1.77554 1.43147 0.91620 0.90641 0.91594 0.87873 0.90736 0.86252 0.86259 0.94885 0.94880 0.92561 0.91974 0.91491 0.91573 0.87840 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.57 37.16 0.36 -0.85 16 2 C 0.08 0.84 3.38 -26.79 -0.09 0.75 16 3 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 4 C 0.09 1.07 5.55 -3.75 -0.02 1.04 16 5 N -1.01 -14.04 2.97 -106.27 -0.32 -14.36 16 6 S 2.59 46.96 5.47 -107.50 -0.59 46.37 16 7 O -0.96 -19.82 16.62 -57.54 -0.96 -20.78 16 8 O -0.96 -19.82 16.61 -57.54 -0.96 -20.77 16 9 C -0.59 -11.29 6.11 37.16 0.23 -11.06 16 10 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 11 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 12 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 15 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 16 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 C 0.11 1.31 3.26 -67.43 -0.22 1.09 16 20 H 0.11 1.38 6.88 -51.93 -0.36 1.03 16 21 C -0.16 -1.67 9.25 37.15 0.34 -1.32 16 22 C 0.06 0.64 6.36 37.31 0.24 0.87 16 23 O -0.38 -4.37 10.01 -35.23 -0.35 -4.72 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.10 1.27 6.87 -51.93 -0.36 0.91 16 28 H 0.07 0.78 7.68 -51.93 -0.40 0.38 16 29 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 30 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 31 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.69 7.24 -51.93 -0.38 0.31 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 321.28 15.07 4.84 4.84 Total: -1.00 -33.98 321.28 -8.43 -42.42 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.10 Total: -1.36 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 0.28 Total: -22.05 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.42 Total: -40.08 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -2.26 Total: -46.27 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 46.96 SS G_CDS: -0.59 Total: 46.37 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.98 -8.43 -42.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104110873.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.177 kcal (2) G-P(sol) polarization free energy of solvation -33.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds