Wall clock time and date at job start Mon Mar 30 2020 01:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 H 1.09004 * 109.70480 * 2 1 4 4 C 1.52869 * 109.61962 * 239.69624 * 2 1 3 5 5 O 1.42959 * 109.30132 * 188.11500 * 4 2 1 6 6 C 1.42965 * 114.16563 * 62.44338 * 5 4 2 7 7 H 1.09005 * 109.55166 * 57.37439 * 6 5 4 8 8 C 1.52998 * 109.51375 * 177.49900 * 6 5 4 9 9 C 1.53295 * 109.22298 * 297.42673 * 6 5 4 10 10 N 1.47149 * 109.67758 * 120.52963 * 2 1 3 11 11 S 1.65596 * 120.98642 * 350.29018 * 10 2 1 12 12 O 1.42098 * 104.27983 * 167.46434 * 11 10 2 13 13 O 1.42092 * 104.28055 * 39.60031 * 11 10 2 14 14 C 1.81407 * 104.44644 * 283.53000 * 11 10 2 15 15 C 1.53005 * 109.47008 * 179.97438 * 14 11 10 16 16 C 1.50697 * 109.46600 * 180.02562 * 15 14 11 17 17 H 1.07998 * 120.00451 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99653 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00048 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00201 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46934 * 59.99834 * 20 18 16 22 22 H 1.48505 * 109.46973 * 300.00050 * 20 18 16 23 23 H 1.48493 * 109.47327 * 179.97438 * 20 18 16 24 24 H 1.08994 * 109.47195 * 291.47367 * 1 2 3 25 25 H 1.08998 * 109.46971 * 51.47948 * 1 2 3 26 26 H 1.08997 * 109.46370 * 171.47365 * 1 2 3 27 27 H 1.09005 * 109.58711 * 68.09816 * 4 2 1 28 28 H 1.09006 * 109.36700 * 307.99817 * 4 2 1 29 29 H 1.08996 * 109.47430 * 179.74435 * 8 6 5 30 30 H 1.08996 * 109.47146 * 299.75180 * 8 6 5 31 31 H 1.09005 * 109.46790 * 59.74655 * 8 6 5 32 32 H 1.09007 * 109.68181 * 292.57289 * 9 6 5 33 33 H 1.09005 * 109.71213 * 172.04464 * 9 6 5 34 34 H 1.09002 * 109.46622 * 60.00189 * 14 11 10 35 35 H 1.08995 * 109.47445 * 300.00246 * 14 11 10 36 36 H 1.08998 * 109.46706 * 60.00419 * 15 14 11 37 37 H 1.08995 * 109.47358 * 300.00470 * 15 14 11 38 38 H 0.97007 * 120.00022 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8977 1.0262 0.0000 4 6 2.0434 -0.7266 -1.2432 5 8 3.4603 -0.8893 -1.1441 6 6 3.8813 -1.6921 -0.0387 7 1 3.4138 -2.6747 -0.1024 8 6 5.4031 -1.8473 -0.0700 9 6 3.4630 -1.0099 1.2688 10 7 2.0256 -0.7038 1.1935 11 16 0.9951 -1.1447 2.4124 12 8 1.7599 -2.0355 3.2129 13 8 -0.1756 -1.5863 1.7391 14 6 0.6697 0.3977 3.3101 15 6 -0.2826 0.1189 4.4747 16 6 -0.5534 1.4004 5.2199 17 1 -0.0927 2.3216 4.8951 18 6 -1.3893 1.3967 6.3164 19 7 -1.9499 0.2748 6.7122 20 14 -1.7256 2.9853 7.2398 21 1 -2.3461 3.9713 6.3189 22 1 -0.4487 3.5330 7.7640 23 1 -2.6498 2.7147 8.3702 24 1 -0.3633 0.3762 0.9563 25 1 -0.3633 0.6400 -0.8040 26 1 -0.3632 -1.0163 -0.1524 27 1 1.8053 -0.1425 -2.1322 28 1 1.5685 -1.7053 -1.3118 29 1 5.7238 -2.4556 0.7756 30 1 5.6998 -2.3323 -0.9999 31 1 5.8699 -0.8642 -0.0081 32 1 4.0285 -0.0872 1.3988 33 1 3.6525 -1.6779 2.1091 34 1 0.2146 1.1221 2.6345 35 1 1.6072 0.7989 3.6949 36 1 0.1721 -0.6056 5.1503 37 1 -1.2201 -0.2821 4.0895 38 1 -1.7750 -0.5503 6.2329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104110877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:55 Heat of formation + Delta-G solvation = -120.189160 kcal Electronic energy + Delta-G solvation = -20916.779381 eV Core-core repulsion = 17693.560103 eV Total energy + Delta-G solvation = -3223.219278 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68348 -37.08175 -35.72463 -35.21007 -34.30511 -33.48580 -31.09518 -30.15792 -26.51524 -25.57972 -25.01679 -22.55635 -21.86468 -21.07486 -18.62034 -17.39266 -17.01495 -16.63586 -16.32329 -16.00625 -15.30645 -15.03594 -14.75940 -14.34018 -13.80328 -13.62962 -13.27317 -12.87806 -12.83052 -12.56783 -12.29098 -12.11396 -12.08904 -11.90783 -11.68284 -11.58056 -11.29594 -11.04514 -10.92144 -10.58528 -10.55853 -10.49655 -10.28933 -10.09271 -10.04863 -8.93941 -8.60492 -8.48669 -6.50279 -4.23289 0.59440 2.80938 3.37259 3.38961 3.54295 3.58244 4.12205 4.39348 4.44556 4.48735 4.59084 4.79335 4.90858 4.94469 5.07031 5.20592 5.25013 5.38483 5.41236 5.44513 5.49009 5.54486 5.56770 5.65033 5.74804 5.86733 5.91783 6.06017 6.27948 6.43896 6.52434 6.92710 6.99370 7.02636 7.93159 8.26885 8.69735 9.49065 10.89446 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031710 B = 0.004658 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.780735 B = 6009.334663 C = 6147.529213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.119 3.881 3 H 0.081 0.919 4 C 0.057 3.943 5 O -0.378 6.378 6 C 0.076 3.924 7 H 0.063 0.937 8 C -0.144 4.144 9 C 0.087 3.913 10 N -1.006 6.006 11 S 2.589 3.411 12 O -0.967 6.967 13 O -0.959 6.959 14 C -0.583 4.583 15 C 0.016 3.984 16 C -0.601 4.601 17 H 0.055 0.945 18 C 0.017 3.983 19 N -0.905 5.905 20 Si 1.073 2.927 21 H -0.286 1.286 22 H -0.286 1.286 23 H -0.280 1.280 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.023 0.977 37 H 0.024 0.976 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.065 -1.101 -15.540 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.012 3.988 3 H 0.099 0.901 4 C -0.021 4.021 5 O -0.297 6.297 6 C 0.016 3.984 7 H 0.081 0.919 8 C -0.201 4.201 9 C -0.039 4.039 10 N -0.844 5.844 11 S 2.689 3.311 12 O -0.957 6.957 13 O -0.950 6.950 14 C -0.716 4.716 15 C -0.023 4.023 16 C -0.640 4.640 17 H 0.073 0.927 18 C -0.188 4.188 19 N -0.540 5.540 20 Si 0.901 3.099 21 H -0.213 1.213 22 H -0.213 1.213 23 H -0.205 1.205 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.058 -1.297 -14.245 17.486 hybrid contribution 0.789 0.044 -1.066 1.327 sum 10.847 -1.252 -15.311 18.806 Atomic orbital electron populations 1.22622 0.92185 1.05774 1.03471 1.21581 0.95266 0.96426 0.85491 0.90069 1.22906 0.81463 1.00370 0.97353 1.87914 1.21952 1.71876 1.47933 1.22433 0.96115 0.93748 0.86076 0.91899 1.21741 0.92535 1.02979 1.02881 1.22181 0.80594 1.01537 0.99569 1.58121 1.18765 1.74352 1.33134 1.05767 0.73571 0.78086 0.73648 1.93502 1.70515 1.62132 1.69590 1.93596 1.48943 1.80727 1.71686 1.30423 1.10236 1.18806 1.12154 1.19067 0.92615 0.99868 0.90764 1.21834 1.32850 0.93684 1.15624 0.92684 1.25982 0.93189 1.03880 0.95771 1.70790 1.41978 0.99813 1.41394 0.83482 0.76546 0.73694 0.76227 1.21268 1.21270 1.20507 0.91526 0.90895 0.88302 0.87787 0.92412 0.90600 0.91548 0.91512 0.90717 0.87489 0.86051 0.86105 0.95848 0.95769 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 7.62 37.16 0.28 -2.05 16 2 C 0.12 1.44 3.69 -67.64 -0.25 1.19 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C 0.06 0.62 6.27 37.09 0.23 0.85 16 5 O -0.38 -4.52 10.39 -35.23 -0.37 -4.89 16 6 C 0.08 0.85 3.40 -26.58 -0.09 0.76 16 7 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 8 C -0.14 -1.22 9.57 37.16 0.36 -0.86 16 9 C 0.09 1.08 5.99 -3.53 -0.02 1.06 16 10 N -1.01 -14.29 3.26 -106.25 -0.35 -14.64 16 11 S 2.59 46.75 4.86 -107.50 -0.52 46.23 16 12 O -0.97 -19.86 16.33 -57.54 -0.94 -20.80 16 13 O -0.96 -18.86 13.66 -57.54 -0.79 -19.64 16 14 C -0.58 -11.40 5.86 37.16 0.22 -11.18 16 15 C 0.02 0.40 4.29 -27.88 -0.12 0.28 16 16 C -0.60 -16.84 9.11 -34.44 -0.31 -17.15 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 19 N -0.90 -27.60 13.65 55.43 0.76 -26.85 16 20 Si 1.07 24.77 29.90 -169.99 -5.08 19.69 16 21 H -0.29 -6.26 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H 0.07 0.96 4.87 -51.93 -0.25 0.71 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.10 1.41 6.49 -51.93 -0.34 1.07 16 27 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.11 1.37 6.64 -51.93 -0.34 1.03 16 34 H 0.12 2.15 6.72 -51.92 -0.35 1.81 16 35 H 0.12 2.19 8.14 -51.93 -0.42 1.77 16 36 H 0.02 0.62 8.01 -51.93 -0.42 0.21 16 37 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 38 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 LS Contribution 311.67 15.07 4.70 4.70 Total: -1.00 -34.22 311.67 -8.23 -42.45 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.84 Total: 0.47 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 0.20 Total: -26.72 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.41 Total: -41.49 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -2.09 Total: -45.33 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Atomic # 16 Polarization: 46.75 SS G_CDS: -0.52 Total: 46.23 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.22 -8.23 -42.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104110877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.741 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds