Wall clock time and date at job start Mon Mar 30 2020 01:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53013 * 1 3 3 H 1.09004 * 109.70480 * 2 1 4 4 C 1.52869 * 109.61962 * 239.69624 * 2 1 3 5 5 O 1.42959 * 109.30132 * 188.11500 * 4 2 1 6 6 C 1.42965 * 114.16563 * 62.44338 * 5 4 2 7 7 H 1.09005 * 109.55166 * 57.37439 * 6 5 4 8 8 C 1.52998 * 109.51375 * 177.49900 * 6 5 4 9 9 C 1.53295 * 109.22298 * 297.42673 * 6 5 4 10 10 N 1.47149 * 109.67758 * 120.52963 * 2 1 3 11 11 S 1.65596 * 120.98642 * 350.29018 * 10 2 1 12 12 O 1.42098 * 104.27983 * 167.46434 * 11 10 2 13 13 O 1.42092 * 104.28055 * 39.60031 * 11 10 2 14 14 C 1.81407 * 104.44644 * 283.53000 * 11 10 2 15 15 C 1.53005 * 109.47008 * 179.97438 * 14 11 10 16 16 C 1.50697 * 109.46600 * 180.02562 * 15 14 11 17 17 H 1.07998 * 120.00451 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99653 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00048 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00201 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46934 * 59.99834 * 20 18 16 22 22 H 1.48505 * 109.46973 * 300.00050 * 20 18 16 23 23 H 1.48493 * 109.47327 * 179.97438 * 20 18 16 24 24 H 1.08994 * 109.47195 * 291.47367 * 1 2 3 25 25 H 1.08998 * 109.46971 * 51.47948 * 1 2 3 26 26 H 1.08997 * 109.46370 * 171.47365 * 1 2 3 27 27 H 1.09005 * 109.58711 * 68.09816 * 4 2 1 28 28 H 1.09006 * 109.36700 * 307.99817 * 4 2 1 29 29 H 1.08996 * 109.47430 * 179.74435 * 8 6 5 30 30 H 1.08996 * 109.47146 * 299.75180 * 8 6 5 31 31 H 1.09005 * 109.46790 * 59.74655 * 8 6 5 32 32 H 1.09007 * 109.68181 * 292.57289 * 9 6 5 33 33 H 1.09005 * 109.71213 * 172.04464 * 9 6 5 34 34 H 1.09002 * 109.46622 * 60.00189 * 14 11 10 35 35 H 1.08995 * 109.47445 * 300.00246 * 14 11 10 36 36 H 1.08998 * 109.46706 * 60.00419 * 15 14 11 37 37 H 1.08995 * 109.47358 * 300.00470 * 15 14 11 38 38 H 0.97007 * 120.00022 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8977 1.0262 0.0000 4 6 2.0434 -0.7266 -1.2432 5 8 3.4603 -0.8893 -1.1441 6 6 3.8813 -1.6921 -0.0387 7 1 3.4138 -2.6747 -0.1024 8 6 5.4031 -1.8473 -0.0700 9 6 3.4630 -1.0099 1.2688 10 7 2.0256 -0.7038 1.1935 11 16 0.9951 -1.1447 2.4124 12 8 1.7599 -2.0355 3.2129 13 8 -0.1756 -1.5863 1.7391 14 6 0.6697 0.3977 3.3101 15 6 -0.2826 0.1189 4.4747 16 6 -0.5534 1.4004 5.2199 17 1 -0.0927 2.3216 4.8951 18 6 -1.3893 1.3967 6.3164 19 7 -1.9499 0.2748 6.7122 20 14 -1.7256 2.9853 7.2398 21 1 -2.3461 3.9713 6.3189 22 1 -0.4487 3.5330 7.7640 23 1 -2.6498 2.7147 8.3702 24 1 -0.3633 0.3762 0.9563 25 1 -0.3633 0.6400 -0.8040 26 1 -0.3632 -1.0163 -0.1524 27 1 1.8053 -0.1425 -2.1322 28 1 1.5685 -1.7053 -1.3118 29 1 5.7238 -2.4556 0.7756 30 1 5.6998 -2.3323 -0.9999 31 1 5.8699 -0.8642 -0.0081 32 1 4.0285 -0.0872 1.3988 33 1 3.6525 -1.6779 2.1091 34 1 0.2146 1.1221 2.6345 35 1 1.6072 0.7989 3.6949 36 1 0.1721 -0.6056 5.1503 37 1 -1.2201 -0.2821 4.0895 38 1 -1.7750 -0.5503 6.2329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104110877.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:55 Heat of formation + Delta-G solvation = -145.408008 kcal Electronic energy + Delta-G solvation = -20917.872952 eV Core-core repulsion = 17693.560103 eV Total energy + Delta-G solvation = -3224.312849 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.61872 -38.57517 -37.21249 -36.35137 -36.31215 -34.39896 -33.04638 -31.08948 -27.62322 -26.92713 -26.47300 -24.01922 -23.31872 -22.05248 -20.01332 -19.21464 -18.17726 -18.07433 -17.50169 -17.34412 -16.54556 -16.06759 -15.74506 -15.67344 -15.44840 -15.29876 -14.92130 -14.31691 -14.05924 -13.88387 -13.50638 -13.29433 -13.24084 -13.04625 -12.87326 -12.76128 -12.64944 -12.49449 -12.31504 -12.24952 -12.09068 -11.93416 -11.85455 -11.40152 -11.16266 -10.79398 -10.65004 -9.83380 -8.78310 -6.52793 -0.87728 1.51784 1.52315 1.60281 1.79799 2.52387 2.66245 2.72612 3.04697 3.06296 3.41137 3.63431 3.78090 3.83503 3.96127 4.04105 4.06711 4.23811 4.32217 4.44788 4.56548 4.59272 4.65572 4.70802 4.80311 4.90281 4.95006 4.96227 5.00618 5.06341 5.30437 5.39901 5.48570 5.77305 6.03684 6.13310 6.40873 7.30231 8.61154 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.031710 B = 0.004658 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.780735 B = 6009.334663 C = 6147.529213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.114 3.886 3 H 0.104 0.896 4 C 0.056 3.944 5 O -0.383 6.383 6 C 0.073 3.927 7 H 0.055 0.945 8 C -0.140 4.140 9 C 0.078 3.922 10 N -1.000 6.000 11 S 2.612 3.388 12 O -0.995 6.995 13 O -0.979 6.979 14 C -0.585 4.585 15 C 0.007 3.993 16 C -0.615 4.615 17 H 0.066 0.934 18 C -0.040 4.040 19 N -0.934 5.934 20 Si 1.122 2.878 21 H -0.264 1.264 22 H -0.265 1.265 23 H -0.284 1.284 24 H 0.046 0.954 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.051 0.949 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.001 0.999 37 H 0.005 0.995 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.490 0.779 -17.132 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.009 3.991 3 H 0.122 0.878 4 C -0.022 4.022 5 O -0.301 6.301 6 C 0.014 3.986 7 H 0.073 0.927 8 C -0.197 4.197 9 C -0.047 4.047 10 N -0.839 5.839 11 S 2.711 3.289 12 O -0.986 6.986 13 O -0.969 6.969 14 C -0.716 4.716 15 C -0.032 4.032 16 C -0.654 4.654 17 H 0.084 0.916 18 C -0.238 4.238 19 N -0.570 5.570 20 Si 0.942 3.058 21 H -0.189 1.189 22 H -0.190 1.190 23 H -0.209 1.209 24 H 0.064 0.936 25 H 0.125 0.875 26 H 0.098 0.902 27 H 0.153 0.847 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.019 0.981 37 H 0.023 0.977 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.492 0.585 -15.846 19.583 hybrid contribution 0.388 -0.580 -0.679 0.974 sum 11.880 0.005 -16.525 20.352 Atomic orbital electron populations 1.22621 0.92836 1.05302 1.03624 1.21878 0.94816 0.97529 0.84893 0.87838 1.23046 0.80966 1.00468 0.97703 1.87921 1.22396 1.71844 1.47970 1.22536 0.97821 0.93071 0.85182 0.92728 1.21754 0.90391 1.03747 1.03818 1.22463 0.79334 1.02639 1.00228 1.57833 1.19215 1.74518 1.32382 1.04825 0.73339 0.77076 0.73616 1.93458 1.71157 1.62935 1.71011 1.93584 1.50464 1.80921 1.71902 1.30376 1.09535 1.20987 1.10728 1.18962 0.93126 0.98554 0.92517 1.22311 1.32402 0.94904 1.15752 0.91588 1.27663 0.92775 1.06259 0.97058 1.70931 1.43812 1.00132 1.42174 0.82888 0.77416 0.70202 0.75313 1.18866 1.18984 1.20912 0.93554 0.87496 0.90160 0.84666 0.93091 0.89503 0.90796 0.90808 0.88655 0.88280 0.84181 0.84626 0.98095 0.97716 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.45 7.62 71.99 0.55 -3.90 16 2 C 0.11 2.49 3.69 44.83 0.17 2.65 16 3 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 4 C 0.06 1.06 6.27 71.94 0.45 1.51 16 5 O -0.38 -8.06 10.39 -148.98 -1.55 -9.61 16 6 C 0.07 1.50 3.40 30.69 0.10 1.60 16 7 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 8 C -0.14 -2.02 9.57 71.98 0.69 -1.33 16 9 C 0.08 1.80 5.99 86.35 0.52 2.32 16 10 N -1.00 -26.97 3.26 -490.08 -1.60 -28.57 16 11 S 2.61 94.90 4.86 -56.49 -0.27 94.63 16 12 O -1.00 -41.63 16.33 -127.65 -2.08 -43.72 16 13 O -0.98 -39.21 13.66 -127.65 -1.74 -40.95 16 14 C -0.58 -22.81 5.86 71.98 0.42 -22.39 16 15 C 0.01 0.38 4.29 29.85 0.13 0.50 16 16 C -0.62 -34.69 9.11 25.60 0.23 -34.46 16 17 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 18 C -0.04 -2.30 5.46 84.66 0.46 -1.84 16 19 N -0.93 -58.57 13.65 21.45 0.29 -58.28 16 20 Si 1.12 49.11 29.90 68.60 2.05 51.16 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 22 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H 0.05 1.30 4.87 -2.39 -0.01 1.28 16 25 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 26 H 0.08 2.24 6.49 -2.39 -0.02 2.22 16 27 H 0.14 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.05 1.04 8.08 -2.38 -0.02 1.02 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.10 2.46 6.64 -2.38 -0.02 2.44 16 34 H 0.14 4.86 6.72 -2.39 -0.02 4.84 16 35 H 0.14 4.80 8.14 -2.39 -0.02 4.78 16 36 H 0.00 0.05 8.01 -2.39 -0.02 0.03 16 37 H 0.00 0.26 8.01 -2.39 -0.02 0.24 16 38 H 0.25 16.26 7.22 -92.70 -0.67 15.59 16 Total: -1.00 -74.99 311.67 -0.05 -75.04 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 1.14 Total: 15.61 kcal Atomic # 6 Polarization: -59.04 SS G_CDS: 3.72 Total: -55.32 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -1.31 Total: -86.84 kcal Atomic # 8 Polarization: -88.90 SS G_CDS: -5.37 Total: -94.27 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 2.05 Total: 51.16 kcal Atomic # 16 Polarization: 94.90 SS G_CDS: -0.27 Total: 94.63 kcal Total: -74.99 -0.05 -75.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104110877.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.368 kcal (2) G-P(sol) polarization free energy of solvation -74.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds