Wall clock time and date at job start Mon Mar 30 2020 01:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46840 * 2 1 4 4 N 1.46498 * 109.47054 * 119.99972 * 2 1 3 5 5 S 1.65603 * 120.00005 * 265.00354 * 4 2 1 6 6 O 1.42098 * 104.27627 * 308.92263 * 5 4 2 7 7 O 1.42105 * 104.27665 * 181.07056 * 5 4 2 8 8 C 1.81394 * 104.45217 * 64.99837 * 5 4 2 9 9 C 1.53001 * 109.47307 * 180.02562 * 8 5 4 10 10 C 1.50694 * 109.47168 * 179.97438 * 9 8 5 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99854 * 179.72538 * 12 10 9 15 15 H 1.48504 * 109.47032 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46816 * 120.00323 * 14 12 10 17 17 H 1.48495 * 109.46630 * 240.00111 * 14 12 10 18 18 C 1.52996 * 109.47307 * 239.99819 * 2 1 3 19 19 H 1.09002 * 109.87192 * 63.99130 * 18 2 1 20 20 C 1.54098 * 109.87988 * 184.99976 * 18 2 1 21 21 C 1.54813 * 104.18755 * 121.45630 * 20 18 2 22 22 C 1.55005 * 102.09283 * 20.87910 * 21 20 18 23 23 O 1.43748 * 109.88080 * 302.83694 * 18 2 1 24 24 H 1.09006 * 109.46986 * 59.99994 * 1 2 3 25 25 H 1.09004 * 109.47351 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47381 * 299.99845 * 1 2 3 27 27 H 0.96995 * 120.00146 * 84.99451 * 4 2 1 28 28 H 1.09000 * 109.46941 * 59.99949 * 8 5 4 29 29 H 1.09002 * 109.46879 * 299.99942 * 8 5 4 30 30 H 1.08998 * 109.46837 * 59.99892 * 9 8 5 31 31 H 1.09002 * 109.46926 * 299.99696 * 9 8 5 32 32 H 0.97001 * 119.99646 * 180.02562 * 13 12 10 33 33 H 1.08998 * 110.49061 * 240.12828 * 20 18 2 34 34 H 1.08995 * 110.48761 * 2.64692 * 20 18 2 35 35 H 1.08998 * 110.90940 * 139.07819 * 21 20 18 36 36 H 1.09005 * 110.90646 * 262.65483 * 21 20 18 37 37 H 1.08995 * 110.61369 * 81.47710 * 22 21 20 38 38 H 1.08999 * 110.61704 * 204.32034 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4121 0.1772 2.5505 6 8 3.2874 1.1906 2.0752 7 8 2.8605 -0.8029 3.4766 8 6 0.8407 0.8989 3.0985 9 6 1.0752 1.7350 4.3582 10 6 -0.2302 2.3351 4.8130 11 1 -1.1364 2.1401 4.2589 12 6 -0.2676 3.1332 5.9368 13 7 0.8361 3.3712 6.6113 14 14 -1.8844 3.8833 6.4962 15 1 -2.9686 3.4703 5.5693 16 1 -2.2003 3.4115 7.8683 17 1 -1.7694 5.3638 6.4960 18 6 2.0400 -0.7213 -1.2492 19 1 1.7397 -0.1730 -2.1421 20 6 3.5758 -0.8370 -1.1971 21 6 3.8441 -2.3601 -1.2683 22 6 2.5272 -2.8932 -1.8881 23 8 1.5119 -2.0575 -1.2920 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.1109 -1.6561 1.1949 28 1 0.1315 0.1009 3.3184 29 1 0.4386 1.5353 2.3101 30 1 1.7842 2.5330 4.1378 31 1 1.4774 1.0990 5.1467 32 1 0.8096 3.9324 7.4021 33 1 4.0258 -0.3301 -2.0507 34 1 3.9581 -0.4235 -0.2639 35 1 4.6939 -2.5755 -1.9159 36 1 4.0014 -2.7743 -0.2724 37 1 2.5364 -2.7724 -2.9713 38 1 2.3729 -3.9386 -1.6209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104110958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:28 Heat of formation + Delta-G solvation = -136.088782 kcal Electronic energy + Delta-G solvation = -20516.587726 eV Core-core repulsion = 17292.678989 eV Total energy + Delta-G solvation = -3223.908737 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.89410 -36.61475 -35.75944 -35.39378 -33.88984 -32.22999 -31.17740 -30.30713 -28.30187 -25.57964 -23.69810 -21.88606 -21.49955 -20.92572 -18.99855 -17.58761 -16.92806 -16.55875 -16.24410 -15.54200 -15.31892 -15.14973 -14.54190 -14.29180 -13.80739 -13.53337 -13.46626 -13.23931 -12.63028 -12.38774 -11.94972 -11.74222 -11.66064 -11.57780 -11.48760 -11.46880 -11.23099 -11.13423 -11.07150 -10.92229 -10.69292 -10.37844 -10.34933 -9.91103 -9.78799 -9.42750 -8.99790 -8.49701 -6.11655 -4.16932 0.82950 3.16138 3.26037 3.33345 3.36844 3.64417 4.26282 4.35399 4.39585 4.50068 4.71195 4.74799 4.77442 5.03309 5.07706 5.21810 5.23719 5.35995 5.42176 5.48803 5.54538 5.62838 5.63864 5.77508 5.81798 5.86221 5.99051 6.17441 6.31088 6.54531 6.71190 7.20028 7.31559 7.37796 7.81800 8.18795 8.86804 9.47858 10.99457 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.004361 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.844099 B = 6418.802974 C = 6861.861982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.148 3.852 3 H 0.102 0.898 4 N -1.117 6.117 5 S 2.591 3.409 6 O -0.969 6.969 7 O -0.969 6.969 8 C -0.591 4.591 9 C 0.027 3.973 10 C -0.519 4.519 11 H 0.062 0.938 12 C 0.057 3.943 13 N -0.891 5.891 14 Si 0.899 3.101 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.076 3.924 19 H 0.079 0.921 20 C -0.156 4.156 21 C -0.156 4.156 22 C 0.046 3.954 23 O -0.367 6.367 24 H 0.065 0.935 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.415 0.585 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.264 0.736 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 -10.036 -18.117 20.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.040 3.960 3 H 0.120 0.880 4 N -0.874 5.874 5 S 2.688 3.312 6 O -0.959 6.959 7 O -0.959 6.959 8 C -0.724 4.724 9 C -0.011 4.011 10 C -0.558 4.558 11 H 0.080 0.920 12 C -0.145 4.145 13 N -0.529 5.529 14 Si 0.727 3.273 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.208 1.208 18 C 0.017 3.983 19 H 0.097 0.903 20 C -0.194 4.194 21 C -0.194 4.194 22 C -0.031 4.031 23 O -0.286 6.286 24 H 0.084 0.916 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.248 0.752 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.150 -9.748 -17.556 20.326 hybrid contribution -1.277 0.155 0.165 1.297 sum 1.872 -9.593 -17.391 19.950 Atomic orbital electron populations 1.22387 0.94726 1.03622 1.02827 1.20974 0.94707 0.96138 0.84153 0.88017 1.55767 1.84121 1.19849 1.27665 1.05584 0.78292 0.74407 0.72921 1.93535 1.62524 1.60282 1.79524 1.93551 1.80624 1.59315 1.62401 1.30550 1.19039 1.11759 1.11070 1.18968 0.99568 0.94295 0.88317 1.21045 0.93493 1.30318 1.10962 0.91975 1.25073 0.96778 0.96262 0.96397 1.69968 1.26876 1.37859 1.18183 0.86419 0.83307 0.78962 0.78633 1.19635 1.20822 1.20811 1.22982 0.92977 0.85008 0.97345 0.90323 1.23020 0.95471 0.96728 1.04178 1.23148 0.98365 0.95613 1.02278 1.23543 0.86790 0.95697 0.97084 1.88886 1.39128 1.18209 1.82359 0.91596 0.91017 0.91367 0.75152 0.86002 0.86163 0.94863 0.94888 0.92608 0.90630 0.89223 0.90350 0.90336 0.92359 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 9.31 37.16 0.35 -1.58 16 2 C 0.15 1.72 2.60 -67.93 -0.18 1.54 16 3 H 0.10 1.18 7.48 -51.93 -0.39 0.79 16 4 N -1.12 -14.86 4.39 -4.89 -0.02 -14.88 16 5 S 2.59 46.25 5.44 -107.50 -0.58 45.67 16 6 O -0.97 -19.63 17.39 -57.54 -1.00 -20.63 16 7 O -0.97 -20.30 18.08 -57.54 -1.04 -21.34 16 8 C -0.59 -11.28 5.16 37.16 0.19 -11.09 16 9 C 0.03 0.70 4.98 -27.89 -0.14 0.56 16 10 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 14 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 C 0.08 0.77 3.25 -26.16 -0.09 0.68 16 19 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 20 C -0.16 -1.52 6.35 -25.20 -0.16 -1.68 16 21 C -0.16 -1.30 7.15 -24.72 -0.18 -1.48 16 22 C 0.05 0.37 7.72 38.22 0.29 0.66 16 23 O -0.37 -3.90 10.06 -35.23 -0.35 -4.25 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.80 7.63 -51.93 -0.40 0.40 16 26 H 0.07 0.79 5.78 -51.93 -0.30 0.49 16 27 H 0.41 5.05 8.48 -34.47 -0.29 4.76 16 28 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 29 H 0.12 2.04 6.77 -51.92 -0.35 1.69 16 30 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.05 7.16 -51.93 -0.37 0.68 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 321.38 15.07 4.84 4.84 Total: -1.00 -34.37 321.38 -8.63 -43.00 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.87 Total: 2.68 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: -0.32 Total: -25.49 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.71 Total: -40.67 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -2.40 Total: -46.22 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 46.25 SS G_CDS: -0.58 Total: 45.67 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.37 -8.63 -43.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104110958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.093 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds