Wall clock time and date at job start Mon Mar 30 2020 01:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46840 * 2 1 4 4 N 1.46498 * 109.47054 * 119.99972 * 2 1 3 5 5 S 1.65603 * 120.00005 * 265.00354 * 4 2 1 6 6 O 1.42098 * 104.27627 * 308.92263 * 5 4 2 7 7 O 1.42105 * 104.27665 * 181.07056 * 5 4 2 8 8 C 1.81394 * 104.45217 * 64.99837 * 5 4 2 9 9 C 1.53001 * 109.47307 * 180.02562 * 8 5 4 10 10 C 1.50694 * 109.47168 * 179.97438 * 9 8 5 11 11 H 1.08000 * 120.00563 * 359.97438 * 10 9 8 12 12 C 1.37885 * 119.99902 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99854 * 179.72538 * 12 10 9 15 15 H 1.48504 * 109.47032 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46816 * 120.00323 * 14 12 10 17 17 H 1.48495 * 109.46630 * 240.00111 * 14 12 10 18 18 C 1.52996 * 109.47307 * 239.99819 * 2 1 3 19 19 H 1.09002 * 109.87192 * 63.99130 * 18 2 1 20 20 C 1.54098 * 109.87988 * 184.99976 * 18 2 1 21 21 C 1.54813 * 104.18755 * 121.45630 * 20 18 2 22 22 C 1.55005 * 102.09283 * 20.87910 * 21 20 18 23 23 O 1.43748 * 109.88080 * 302.83694 * 18 2 1 24 24 H 1.09006 * 109.46986 * 59.99994 * 1 2 3 25 25 H 1.09004 * 109.47351 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47381 * 299.99845 * 1 2 3 27 27 H 0.96995 * 120.00146 * 84.99451 * 4 2 1 28 28 H 1.09000 * 109.46941 * 59.99949 * 8 5 4 29 29 H 1.09002 * 109.46879 * 299.99942 * 8 5 4 30 30 H 1.08998 * 109.46837 * 59.99892 * 9 8 5 31 31 H 1.09002 * 109.46926 * 299.99696 * 9 8 5 32 32 H 0.97001 * 119.99646 * 180.02562 * 13 12 10 33 33 H 1.08998 * 110.49061 * 240.12828 * 20 18 2 34 34 H 1.08995 * 110.48761 * 2.64692 * 20 18 2 35 35 H 1.08998 * 110.90940 * 139.07819 * 21 20 18 36 36 H 1.09005 * 110.90646 * 262.65483 * 21 20 18 37 37 H 1.08995 * 110.61369 * 81.47710 * 22 21 20 38 38 H 1.08999 * 110.61704 * 204.32034 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.4121 0.1772 2.5505 6 8 3.2874 1.1906 2.0752 7 8 2.8605 -0.8029 3.4766 8 6 0.8407 0.8989 3.0985 9 6 1.0752 1.7350 4.3582 10 6 -0.2302 2.3351 4.8130 11 1 -1.1364 2.1401 4.2589 12 6 -0.2676 3.1332 5.9368 13 7 0.8361 3.3712 6.6113 14 14 -1.8844 3.8833 6.4962 15 1 -2.9686 3.4703 5.5693 16 1 -2.2003 3.4115 7.8683 17 1 -1.7694 5.3638 6.4960 18 6 2.0400 -0.7213 -1.2492 19 1 1.7397 -0.1730 -2.1421 20 6 3.5758 -0.8370 -1.1971 21 6 3.8441 -2.3601 -1.2683 22 6 2.5272 -2.8932 -1.8881 23 8 1.5119 -2.0575 -1.2920 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.1109 -1.6561 1.1949 28 1 0.1315 0.1009 3.3184 29 1 0.4386 1.5353 2.3101 30 1 1.7842 2.5330 4.1378 31 1 1.4774 1.0990 5.1467 32 1 0.8096 3.9324 7.4021 33 1 4.0258 -0.3301 -2.0507 34 1 3.9581 -0.4235 -0.2639 35 1 4.6939 -2.5755 -1.9159 36 1 4.0014 -2.7743 -0.2724 37 1 2.5364 -2.7724 -2.9713 38 1 2.3729 -3.9386 -1.6209 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104110958.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:27 Heat of formation + Delta-G solvation = -162.335724 kcal Electronic energy + Delta-G solvation = -20517.725879 eV Core-core repulsion = 17292.678989 eV Total energy + Delta-G solvation = -3225.046890 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.65365 -38.17471 -37.03877 -36.70898 -35.89404 -33.16172 -32.91788 -31.30888 -29.08235 -27.55702 -24.50032 -23.55812 -22.44803 -21.79290 -20.37769 -19.16271 -18.39970 -17.78409 -17.19913 -16.94393 -16.57214 -16.49885 -16.21377 -15.36618 -15.06651 -14.58275 -14.46596 -14.37257 -14.15495 -13.80998 -13.40686 -13.20756 -13.13248 -12.94037 -12.82405 -12.69938 -12.53044 -12.40931 -12.24324 -12.12531 -11.95876 -11.84535 -11.72099 -11.45159 -11.14874 -10.67130 -10.64864 -10.30459 -8.25540 -6.39270 -0.66650 1.41612 1.42085 1.55511 1.84554 2.38602 2.80350 2.93571 3.08136 3.27434 3.57946 3.75139 3.98997 4.03758 4.10221 4.12556 4.27390 4.31782 4.44237 4.52017 4.65494 4.72960 4.86859 4.89311 4.97155 5.01994 5.13822 5.22810 5.26899 5.28346 5.30069 5.49097 5.69536 6.00891 6.06979 6.14472 6.74617 7.30947 8.87024 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.034695 B = 0.004361 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.844099 B = 6418.802974 C = 6861.861982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.137 3.863 3 H 0.102 0.898 4 N -1.098 6.098 5 S 2.618 3.382 6 O -0.993 6.993 7 O -1.002 7.002 8 C -0.589 4.589 9 C 0.020 3.980 10 C -0.537 4.537 11 H 0.076 0.924 12 C -0.004 4.004 13 N -0.935 5.935 14 Si 0.974 3.026 15 H -0.256 1.256 16 H -0.279 1.279 17 H -0.278 1.278 18 C 0.079 3.921 19 H 0.101 0.899 20 C -0.162 4.162 21 C -0.156 4.156 22 C 0.043 3.957 23 O -0.384 6.384 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.422 0.578 28 H 0.141 0.859 29 H 0.144 0.856 30 H 0.008 0.992 31 H 0.004 0.996 32 H 0.267 0.733 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.855 -10.525 -20.180 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.030 3.970 3 H 0.120 0.880 4 N -0.859 5.859 5 S 2.714 3.286 6 O -0.983 6.983 7 O -0.992 6.992 8 C -0.721 4.721 9 C -0.019 4.019 10 C -0.576 4.576 11 H 0.094 0.906 12 C -0.202 4.202 13 N -0.574 5.574 14 Si 0.798 3.202 15 H -0.179 1.179 16 H -0.205 1.205 17 H -0.203 1.203 18 C 0.020 3.980 19 H 0.119 0.881 20 C -0.199 4.199 21 C -0.194 4.194 22 C -0.033 4.033 23 O -0.303 6.303 24 H 0.105 0.895 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.259 0.741 28 H 0.159 0.841 29 H 0.162 0.838 30 H 0.026 0.974 31 H 0.023 0.977 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.602 -10.248 -19.627 22.199 hybrid contribution -0.749 0.257 0.722 1.071 sum 0.853 -9.991 -18.905 21.400 Atomic orbital electron populations 1.22380 0.93819 1.03750 1.03474 1.21290 0.95484 0.96316 0.83919 0.88041 1.55300 1.83926 1.19966 1.26702 1.04509 0.77378 0.73673 0.73022 1.93499 1.63252 1.61519 1.80046 1.93498 1.81178 1.60168 1.64376 1.30464 1.20812 1.11978 1.08845 1.18827 0.98455 0.94045 0.90523 1.21545 0.94595 1.30196 1.11240 0.90583 1.26116 1.00687 0.96824 0.96600 1.70112 1.29537 1.38909 1.18886 0.85262 0.78748 0.77940 0.78280 1.17908 1.20472 1.20326 1.23010 0.92961 0.85100 0.96975 0.88093 1.23060 0.95474 0.97778 1.03634 1.23164 0.99421 0.94576 1.02211 1.23707 0.85810 0.95829 0.97919 1.88864 1.40063 1.18548 1.82836 0.89517 0.91121 0.92164 0.74136 0.84124 0.83782 0.97376 0.97732 0.92420 0.88902 0.91723 0.88536 0.91467 0.90674 0.88092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.40 9.31 71.98 0.67 -2.73 16 2 C 0.14 2.94 2.60 44.99 0.12 3.05 16 3 H 0.10 2.20 7.48 -2.39 -0.02 2.19 16 4 N -1.10 -28.22 4.39 -169.40 -0.74 -28.96 16 5 S 2.62 94.21 5.44 -56.49 -0.31 93.90 16 6 O -0.99 -40.85 17.39 -127.65 -2.22 -43.07 16 7 O -1.00 -42.82 18.08 -127.65 -2.31 -45.13 16 8 C -0.59 -22.38 5.16 71.98 0.37 -22.01 16 9 C 0.02 1.07 4.98 29.85 0.15 1.22 16 10 C -0.54 -29.78 9.11 25.60 0.23 -29.55 16 11 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 12 C 0.00 -0.23 5.46 84.66 0.46 0.24 16 13 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 14 Si 0.97 43.35 29.54 68.60 2.03 45.37 16 15 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 18 C 0.08 1.39 3.25 30.96 0.10 1.49 16 19 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 20 C -0.16 -2.85 6.35 31.58 0.20 -2.65 16 21 C -0.16 -2.29 7.15 31.90 0.23 -2.07 16 22 C 0.04 0.59 7.72 72.67 0.56 1.15 16 23 O -0.38 -7.19 10.06 -148.98 -1.50 -8.69 16 24 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.07 1.40 7.63 -2.39 -0.02 1.38 16 26 H 0.06 1.25 5.78 -2.39 -0.01 1.24 16 27 H 0.42 9.89 8.48 -96.75 -0.82 9.07 16 28 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 29 H 0.14 4.72 6.77 -2.39 -0.02 4.70 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.48 7.16 -2.39 -0.02 1.46 16 35 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -74.75 321.38 -1.44 -76.19 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.23 Total: 19.00 kcal Atomic # 6 Polarization: -54.94 SS G_CDS: 3.09 Total: -51.85 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -0.46 Total: -85.73 kcal Atomic # 8 Polarization: -90.86 SS G_CDS: -6.03 Total: -96.89 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 94.21 SS G_CDS: -0.31 Total: 93.90 kcal Total: -74.75 -1.44 -76.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104110958.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.143 kcal (2) G-P(sol) polarization free energy of solvation -74.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds