Wall clock time and date at job start Mon Mar 30 2020 01:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.71018 * 2 1 4 4 C 1.53712 * 109.74918 * 120.77223 * 2 1 3 5 5 O 1.42959 * 109.14731 * 172.16739 * 4 2 1 6 6 C 1.42964 * 114.16839 * 297.28751 * 5 4 2 7 7 C 1.53296 * 109.22044 * 62.57969 * 6 5 4 8 8 N 1.47149 * 109.68258 * 239.46771 * 2 1 3 9 9 S 1.65607 * 120.98175 * 9.76378 * 8 2 1 10 10 O 1.42097 * 104.27684 * 160.47804 * 9 8 2 11 11 O 1.42095 * 104.27613 * 32.61736 * 9 8 2 12 12 C 1.81408 * 104.44624 * 276.54769 * 9 8 2 13 13 C 1.52995 * 109.46909 * 180.02562 * 12 9 8 14 14 C 1.53002 * 109.47226 * 180.02562 * 13 12 9 15 15 C 1.50696 * 109.47196 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00111 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00117 * 179.72021 * 15 14 13 18 18 N 1.31519 * 120.00041 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00228 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46849 * 90.00379 * 19 17 15 21 21 H 1.48509 * 109.47124 * 210.00035 * 19 17 15 22 22 H 1.48494 * 109.47121 * 330.00251 * 19 17 15 23 23 H 1.09000 * 109.47166 * 165.59065 * 1 2 3 24 24 H 1.09004 * 109.47192 * 285.59138 * 1 2 3 25 25 H 1.08995 * 109.47381 * 45.59179 * 1 2 3 26 26 H 1.08996 * 109.65362 * 52.19948 * 4 2 1 27 27 H 1.09001 * 109.44307 * 292.00737 * 4 2 1 28 28 H 1.09006 * 109.50887 * 302.65849 * 6 5 4 29 29 H 1.08992 * 109.55883 * 182.53198 * 6 5 4 30 30 H 1.09002 * 109.68281 * 187.97676 * 7 6 5 31 31 H 1.09004 * 109.68002 * 67.42653 * 7 6 5 32 32 H 1.08999 * 109.46555 * 59.99983 * 12 9 8 33 33 H 1.08996 * 109.46949 * 299.99710 * 12 9 8 34 34 H 1.09004 * 109.47598 * 60.00022 * 13 12 9 35 35 H 1.09002 * 109.46955 * 300.00029 * 13 12 9 36 36 H 1.08995 * 109.47193 * 59.99092 * 14 13 12 37 37 H 1.09002 * 109.46894 * 299.99719 * 14 13 12 38 38 H 0.96993 * 120.00350 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0494 -0.7402 1.2430 5 8 3.4670 -0.8928 1.1396 6 6 3.8908 -1.6866 0.0287 7 6 3.4647 -0.9999 -1.2740 8 7 2.0256 -0.7039 -1.1934 9 16 0.9952 -1.1437 -2.4130 10 8 1.8454 -1.3500 -3.5327 11 8 0.0068 -0.1229 -2.4219 12 6 0.2814 -2.7162 -1.8575 13 6 -0.6993 -3.2320 -2.9124 14 6 -1.3018 -4.5579 -2.4436 15 6 -2.2683 -5.0657 -3.4824 16 1 -2.4363 -4.4991 -4.3865 17 6 -2.9340 -6.2561 -3.2813 18 7 -2.7261 -6.9484 -2.1825 19 14 -4.1326 -6.8852 -4.5686 20 1 -3.4087 -7.7413 -5.5424 21 1 -5.1979 -7.6804 -3.9065 22 1 -4.7439 -5.7341 -5.2801 23 1 -0.3633 -0.9953 -0.2557 24 1 -0.3634 0.2762 0.9899 25 1 -0.3634 0.7191 -0.7341 26 1 1.5811 -1.7223 1.3072 27 1 1.8095 -0.1627 2.1358 28 1 3.4292 -2.6723 0.0885 29 1 4.9755 -1.7909 0.0474 30 1 3.6566 -1.6625 -2.1180 31 1 4.0238 -0.0727 -1.4000 32 1 -0.2449 -2.5634 -0.9153 33 1 1.0780 -3.4463 -1.7146 34 1 -0.1726 -3.3847 -3.8545 35 1 -1.4958 -2.5019 -3.0558 36 1 -1.8285 -4.4048 -1.5018 37 1 -0.5055 -5.2882 -2.3000 38 1 -3.1941 -7.7860 -2.0411 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104111404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:12 Heat of formation + Delta-G solvation = -118.053272 kcal Electronic energy + Delta-G solvation = -20675.882179 eV Core-core repulsion = 17452.755520 eV Total energy + Delta-G solvation = -3223.126659 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.59737 -37.24019 -35.90005 -35.27867 -34.74262 -32.73811 -32.21100 -28.22251 -27.88066 -26.46481 -23.81986 -23.20463 -21.63743 -20.38250 -18.86721 -17.50747 -16.93015 -16.59310 -16.32972 -15.79889 -15.48384 -15.14686 -14.97227 -14.62570 -14.48470 -14.25052 -13.08051 -12.92576 -12.63780 -12.34937 -12.14724 -12.09197 -11.99741 -11.89607 -11.80129 -11.51996 -11.29853 -11.14473 -10.94656 -10.84324 -10.65540 -10.48231 -10.24108 -9.98772 -9.45196 -9.21332 -8.88039 -8.43761 -6.08675 -4.11985 0.36066 2.60607 3.28476 3.34703 3.38715 3.58564 3.92351 4.21469 4.34415 4.40559 4.49784 4.73657 4.86343 4.93042 5.02006 5.07578 5.14526 5.22632 5.27820 5.34633 5.35365 5.50205 5.63932 5.73774 5.87393 5.93466 6.19512 6.29193 6.39616 6.41995 6.82258 6.86413 7.52835 7.62350 7.89038 8.29290 8.94196 9.53021 11.02560 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027761 B = 0.004351 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.351152 B = 6434.225464 C = 6659.526917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.124 3.876 3 H 0.086 0.914 4 C 0.049 3.951 5 O -0.379 6.379 6 C 0.045 3.955 7 C 0.086 3.914 8 N -1.006 6.006 9 S 2.598 3.402 10 O -0.962 6.962 11 O -0.954 6.954 12 C -0.613 4.613 13 C -0.105 4.105 14 C 0.031 3.969 15 C -0.527 4.527 16 H 0.058 0.942 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 H 0.059 0.941 24 H 0.078 0.922 25 H 0.112 0.888 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.765 12.559 7.362 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.018 3.982 3 H 0.104 0.896 4 C -0.030 4.030 5 O -0.297 6.297 6 C -0.033 4.033 7 C -0.039 4.039 8 N -0.843 5.843 9 S 2.697 3.303 10 O -0.952 6.952 11 O -0.945 6.945 12 C -0.744 4.744 13 C -0.144 4.144 14 C -0.007 4.007 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.130 0.870 26 H 0.078 0.922 27 H 0.122 0.878 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.720 13.012 6.778 18.778 hybrid contribution -0.842 -1.175 -0.268 1.470 sum 10.877 11.837 6.510 17.344 Atomic orbital electron populations 1.22774 0.92605 1.04882 1.05279 1.21705 0.95043 0.96720 0.84755 0.89604 1.23198 0.81672 1.00473 0.97611 1.87935 1.21932 1.72328 1.47522 1.23013 1.00805 0.93810 0.85683 1.22097 0.80583 1.01938 0.99326 1.58143 1.17918 1.72307 1.35982 1.05501 0.73978 0.77477 0.73369 1.93541 1.65836 1.87348 1.48478 1.93563 1.60813 1.54162 1.85918 1.30759 1.11771 1.20515 1.11357 1.21503 0.95896 1.02081 0.94953 1.19058 0.95609 0.89186 0.96863 1.21246 1.24347 1.06173 1.04747 0.92361 1.25016 0.96984 0.96692 0.95628 1.69954 1.42840 1.15024 1.25627 0.86553 0.80769 0.78969 0.81513 1.20544 1.21140 1.19716 0.92187 0.90320 0.86975 0.92202 0.87783 0.92335 0.87660 0.87919 0.90404 0.85318 0.85561 0.91615 0.91535 0.96148 0.96151 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.10 7.76 37.16 0.29 -1.81 16 2 C 0.12 1.28 3.65 -67.21 -0.25 1.03 16 3 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 4 C 0.05 0.45 6.27 37.53 0.24 0.68 16 5 O -0.38 -3.99 10.74 -35.23 -0.38 -4.37 16 6 C 0.05 0.41 6.99 37.31 0.26 0.67 16 7 C 0.09 0.87 6.54 -3.53 -0.02 0.85 16 8 N -1.01 -11.97 3.26 -105.80 -0.35 -12.31 16 9 S 2.60 38.86 4.80 -107.50 -0.52 38.35 16 10 O -0.96 -16.92 16.59 -57.54 -0.95 -17.87 16 11 O -0.95 -16.00 14.06 -57.54 -0.81 -16.81 16 12 C -0.61 -9.44 5.89 37.15 0.22 -9.22 16 13 C -0.10 -2.11 5.16 -26.73 -0.14 -2.25 16 14 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.75 9.11 -34.44 -0.31 -15.06 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 19 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H 0.06 0.68 4.69 -51.93 -0.24 0.43 16 24 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 25 H 0.11 1.40 6.10 -51.93 -0.32 1.08 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.10 1.02 7.02 -51.93 -0.36 0.66 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.13 1.78 6.03 -51.92 -0.31 1.46 16 33 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 312.92 15.07 4.72 4.72 Total: -1.00 -33.89 312.92 -8.37 -42.26 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.85 Total: -1.79 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 0.05 Total: -22.91 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.39 Total: -38.00 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -2.14 Total: -39.05 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 38.86 SS G_CDS: -0.52 Total: 38.35 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.89 -8.37 -42.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104111404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.792 kcal (2) G-P(sol) polarization free energy of solvation -33.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds