Wall clock time and date at job start Mon Mar 30 2020 01:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.71018 * 2 1 4 4 C 1.53712 * 109.74918 * 120.77223 * 2 1 3 5 5 O 1.42959 * 109.14731 * 172.16739 * 4 2 1 6 6 C 1.42964 * 114.16839 * 297.28751 * 5 4 2 7 7 C 1.53296 * 109.22044 * 62.57969 * 6 5 4 8 8 N 1.47149 * 109.68258 * 239.46771 * 2 1 3 9 9 S 1.65607 * 120.98175 * 9.76378 * 8 2 1 10 10 O 1.42097 * 104.27684 * 160.47804 * 9 8 2 11 11 O 1.42095 * 104.27613 * 32.61736 * 9 8 2 12 12 C 1.81408 * 104.44624 * 276.54769 * 9 8 2 13 13 C 1.52995 * 109.46909 * 180.02562 * 12 9 8 14 14 C 1.53002 * 109.47226 * 180.02562 * 13 12 9 15 15 C 1.50696 * 109.47196 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00111 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00117 * 179.72021 * 15 14 13 18 18 N 1.31519 * 120.00041 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00228 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46849 * 90.00379 * 19 17 15 21 21 H 1.48509 * 109.47124 * 210.00035 * 19 17 15 22 22 H 1.48494 * 109.47121 * 330.00251 * 19 17 15 23 23 H 1.09000 * 109.47166 * 165.59065 * 1 2 3 24 24 H 1.09004 * 109.47192 * 285.59138 * 1 2 3 25 25 H 1.08995 * 109.47381 * 45.59179 * 1 2 3 26 26 H 1.08996 * 109.65362 * 52.19948 * 4 2 1 27 27 H 1.09001 * 109.44307 * 292.00737 * 4 2 1 28 28 H 1.09006 * 109.50887 * 302.65849 * 6 5 4 29 29 H 1.08992 * 109.55883 * 182.53198 * 6 5 4 30 30 H 1.09002 * 109.68281 * 187.97676 * 7 6 5 31 31 H 1.09004 * 109.68002 * 67.42653 * 7 6 5 32 32 H 1.08999 * 109.46555 * 59.99983 * 12 9 8 33 33 H 1.08996 * 109.46949 * 299.99710 * 12 9 8 34 34 H 1.09004 * 109.47598 * 60.00022 * 13 12 9 35 35 H 1.09002 * 109.46955 * 300.00029 * 13 12 9 36 36 H 1.08995 * 109.47193 * 59.99092 * 14 13 12 37 37 H 1.09002 * 109.46894 * 299.99719 * 14 13 12 38 38 H 0.96993 * 120.00350 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0494 -0.7402 1.2430 5 8 3.4670 -0.8928 1.1396 6 6 3.8908 -1.6866 0.0287 7 6 3.4647 -0.9999 -1.2740 8 7 2.0256 -0.7039 -1.1934 9 16 0.9952 -1.1437 -2.4130 10 8 1.8454 -1.3500 -3.5327 11 8 0.0068 -0.1229 -2.4219 12 6 0.2814 -2.7162 -1.8575 13 6 -0.6993 -3.2320 -2.9124 14 6 -1.3018 -4.5579 -2.4436 15 6 -2.2683 -5.0657 -3.4824 16 1 -2.4363 -4.4991 -4.3865 17 6 -2.9340 -6.2561 -3.2813 18 7 -2.7261 -6.9484 -2.1825 19 14 -4.1326 -6.8852 -4.5686 20 1 -3.4087 -7.7413 -5.5424 21 1 -5.1979 -7.6804 -3.9065 22 1 -4.7439 -5.7341 -5.2801 23 1 -0.3633 -0.9953 -0.2557 24 1 -0.3634 0.2762 0.9899 25 1 -0.3634 0.7191 -0.7341 26 1 1.5811 -1.7223 1.3072 27 1 1.8095 -0.1627 2.1358 28 1 3.4292 -2.6723 0.0885 29 1 4.9755 -1.7909 0.0474 30 1 3.6566 -1.6625 -2.1180 31 1 4.0238 -0.0727 -1.4000 32 1 -0.2449 -2.5634 -0.9153 33 1 1.0780 -3.4463 -1.7146 34 1 -0.1726 -3.3847 -3.8545 35 1 -1.4958 -2.5019 -3.0558 36 1 -1.8285 -4.4048 -1.5018 37 1 -0.5055 -5.2882 -2.3000 38 1 -3.1941 -7.7860 -2.0411 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104111404.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:12 Heat of formation + Delta-G solvation = -142.747519 kcal Electronic energy + Delta-G solvation = -20676.953002 eV Core-core repulsion = 17452.755520 eV Total energy + Delta-G solvation = -3224.197482 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38027 -38.48815 -37.15611 -36.52198 -36.17144 -34.22852 -33.50262 -29.74571 -28.99811 -27.27955 -25.66279 -24.00200 -22.83861 -21.83994 -19.97848 -18.75867 -18.37953 -17.87894 -17.28402 -17.10444 -16.54284 -16.27645 -16.18790 -15.82736 -15.62165 -15.47513 -14.54268 -14.17070 -13.96249 -13.91230 -13.41521 -13.25215 -13.16485 -13.03139 -12.91044 -12.79099 -12.73892 -12.59167 -12.40113 -12.16221 -12.03388 -11.74306 -11.47473 -11.36598 -11.32957 -10.87481 -10.59280 -9.79885 -8.24426 -6.35696 -0.84558 1.39622 1.40152 1.51609 1.54511 2.38621 2.72381 2.90630 3.07178 3.09399 3.44976 3.68048 3.76483 3.78844 4.05883 4.11028 4.18865 4.28716 4.36476 4.47396 4.56958 4.63659 4.66640 4.78774 4.86260 4.90920 5.00785 5.08345 5.10534 5.42185 5.45731 5.51246 5.59441 5.76897 6.16134 6.17289 6.79695 7.33962 8.87111 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.027761 B = 0.004351 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.351152 B = 6434.225464 C = 6659.526917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.121 3.879 3 H 0.095 0.905 4 C 0.048 3.952 5 O -0.391 6.391 6 C 0.044 3.956 7 C 0.078 3.922 8 N -1.001 6.001 9 S 2.620 3.380 10 O -0.989 6.989 11 O -0.974 6.974 12 C -0.613 4.613 13 C -0.104 4.104 14 C 0.032 3.968 15 C -0.553 4.553 16 H 0.060 0.940 17 C 0.004 3.996 18 N -0.930 5.930 19 Si 0.963 3.037 20 H -0.272 1.272 21 H -0.279 1.279 22 H -0.264 1.264 23 H 0.050 0.950 24 H 0.107 0.893 25 H 0.092 0.908 26 H 0.061 0.939 27 H 0.128 0.872 28 H 0.060 0.940 29 H 0.129 0.871 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.003 0.997 37 H 0.002 0.998 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.230 13.113 7.825 19.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.016 3.984 3 H 0.113 0.887 4 C -0.030 4.030 5 O -0.309 6.309 6 C -0.034 4.034 7 C -0.046 4.046 8 N -0.841 5.841 9 S 2.718 3.282 10 O -0.979 6.979 11 O -0.964 6.964 12 C -0.743 4.743 13 C -0.143 4.143 14 C -0.006 4.006 15 C -0.591 4.591 16 H 0.078 0.922 17 C -0.194 4.194 18 N -0.570 5.570 19 Si 0.787 3.213 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.189 1.189 23 H 0.069 0.931 24 H 0.125 0.875 25 H 0.111 0.889 26 H 0.079 0.921 27 H 0.146 0.854 28 H 0.078 0.922 29 H 0.147 0.853 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.022 0.978 37 H 0.020 0.980 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.183 13.565 7.233 19.615 hybrid contribution -0.938 -1.306 -0.350 1.645 sum 11.245 12.259 6.883 18.003 Atomic orbital electron populations 1.22781 0.92947 1.03751 1.06415 1.21899 0.94830 0.97229 0.84455 0.88701 1.23317 0.81173 1.00790 0.97730 1.87927 1.22500 1.72557 1.47913 1.23147 1.02286 0.93428 0.84525 1.22338 0.79336 1.02732 1.00239 1.57918 1.18293 1.72017 1.35911 1.04647 0.73579 0.76683 0.73270 1.93501 1.66511 1.87575 1.50341 1.93552 1.61866 1.54531 1.86433 1.30731 1.11384 1.21622 1.10570 1.21300 0.96959 0.99741 0.96304 1.18949 0.94670 0.91295 0.95686 1.21728 1.25164 1.06720 1.05509 0.92182 1.25922 0.98796 0.96921 0.97766 1.70066 1.43951 1.15508 1.27445 0.85483 0.78438 0.78538 0.78851 1.19711 1.20482 1.18877 0.93089 0.87464 0.88909 0.92113 0.85439 0.92176 0.85301 0.87945 0.89369 0.83738 0.84079 0.91720 0.91435 0.97815 0.97972 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.97 7.76 71.98 0.56 -3.41 16 2 C 0.12 2.26 3.65 45.11 0.16 2.43 16 3 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 4 C 0.05 0.76 6.27 72.22 0.45 1.21 16 5 O -0.39 -7.19 10.74 -148.98 -1.60 -8.79 16 6 C 0.04 0.69 6.99 72.08 0.50 1.19 16 7 C 0.08 1.45 6.54 86.35 0.56 2.01 16 8 N -1.00 -22.33 3.26 -488.64 -1.59 -23.93 16 9 S 2.62 76.75 4.80 -56.49 -0.27 76.48 16 10 O -0.99 -34.37 16.59 -127.65 -2.12 -36.49 16 11 O -0.97 -32.32 14.06 -127.65 -1.79 -34.11 16 12 C -0.61 -18.61 5.89 71.98 0.42 -18.18 16 13 C -0.10 -4.21 5.16 30.59 0.16 -4.06 16 14 C 0.03 1.66 4.97 29.85 0.15 1.80 16 15 C -0.55 -31.36 9.11 25.60 0.23 -31.12 16 16 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 17 C 0.00 0.24 5.46 84.65 0.46 0.71 16 18 N -0.93 -55.46 13.29 21.45 0.28 -55.17 16 19 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 20 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 21 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 23 H 0.05 1.09 4.69 -2.39 -0.01 1.08 16 24 H 0.11 1.45 8.08 -2.38 -0.02 1.43 16 25 H 0.09 2.24 6.10 -2.39 -0.01 2.23 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.10 1.91 7.02 -2.39 -0.02 1.89 16 31 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.14 3.90 6.03 -2.39 -0.01 3.88 16 33 H 0.14 3.82 8.14 -2.39 -0.02 3.80 16 34 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -72.29 312.92 -0.36 -72.65 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 1.04 Total: 10.85 kcal Atomic # 6 Polarization: -51.09 SS G_CDS: 3.67 Total: -47.42 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -1.31 Total: -79.10 kcal Atomic # 8 Polarization: -73.88 SS G_CDS: -5.51 Total: -79.40 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 76.75 SS G_CDS: -0.27 Total: 76.48 kcal Total: -72.29 -0.36 -72.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104111404.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.099 kcal (2) G-P(sol) polarization free energy of solvation -72.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds