Wall clock time and date at job start Mon Mar 30 2020 01:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47355 * 2 1 4 4 C 1.50704 * 109.47086 * 119.99754 * 2 1 3 5 5 H 1.07992 * 120.00120 * 116.68964 * 4 2 1 6 6 C 1.37875 * 119.99522 * 296.68843 * 4 2 1 7 7 N 1.31513 * 120.00501 * 352.38401 * 6 4 2 8 8 Si 1.86806 * 119.99715 * 172.66612 * 6 4 2 9 9 H 1.48497 * 109.47165 * 264.79730 * 8 6 4 10 10 H 1.48503 * 109.46939 * 24.79275 * 8 6 4 11 11 H 1.48498 * 109.47436 * 144.79640 * 8 6 4 12 12 N 1.46497 * 109.47488 * 239.99998 * 2 1 3 13 13 C 1.34780 * 120.00312 * 84.99823 * 12 2 1 14 14 O 1.21279 * 119.99812 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99852 * 180.02562 * 13 12 2 16 16 O 1.42898 * 109.46619 * 179.97438 * 15 13 12 17 17 C 1.35920 * 116.99915 * 179.97438 * 16 15 13 18 18 C 1.38896 * 119.96647 * 359.72387 * 17 16 15 19 19 C 1.38291 * 120.28853 * 179.76180 * 18 17 16 20 20 C 1.37929 * 120.23578 * 0.51536 * 19 18 17 21 21 C 1.39830 * 119.93922 * 359.74331 * 20 19 18 22 22 C 1.47186 * 120.14724 * 180.02562 * 21 20 19 23 23 O 1.21253 * 119.99887 * 179.97438 * 22 21 20 24 24 C 1.38376 * 119.97022 * 180.02562 * 17 16 15 25 25 H 1.09001 * 109.47267 * 177.81203 * 1 2 3 26 26 H 1.08995 * 109.47232 * 297.82001 * 1 2 3 27 27 H 1.09001 * 109.47019 * 57.81936 * 1 2 3 28 28 H 0.96997 * 120.00137 * 180.27656 * 7 6 4 29 29 H 0.97006 * 119.99727 * 264.99964 * 12 2 1 30 30 H 1.09000 * 109.46993 * 299.99949 * 15 13 12 31 31 H 1.09000 * 109.46898 * 60.00268 * 15 13 12 32 32 H 1.07995 * 119.85362 * 0.02562 * 18 17 16 33 33 H 1.08000 * 119.87723 * 180.25898 * 19 18 17 34 34 H 1.08008 * 120.02992 * 179.76195 * 20 19 18 35 35 H 1.08001 * 120.00001 * 359.97438 * 22 21 20 36 36 H 1.07998 * 120.12164 * 359.96113 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6083 -1.6185 1.1324 6 6 1.7564 -0.2007 2.4815 7 7 1.1871 0.9789 2.6002 8 14 2.1985 -1.1822 4.0082 9 1 1.0150 -1.9586 4.4575 10 1 3.3110 -2.1140 3.6927 11 1 2.6209 -0.2546 5.0881 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7289 -3.5877 16 8 2.6966 0.1892 -4.6817 17 6 3.1312 -0.2950 -5.8751 18 6 3.5095 -1.6267 -5.9872 19 6 3.9480 -2.1276 -7.1993 20 6 4.0232 -1.3054 -8.3043 21 6 3.6499 0.0382 -8.2010 22 6 3.7277 0.9195 -9.3773 23 8 3.4028 2.0841 -9.2849 24 6 3.2023 0.5408 -6.9756 25 1 -0.3634 -1.0269 -0.0392 26 1 -0.3633 0.4796 0.9088 27 1 -0.3633 0.5473 -0.8698 28 1 0.9967 1.3391 3.4805 29 1 2.2491 -1.6318 -1.1525 30 1 3.6482 -1.1214 -3.3984 31 1 1.9761 -1.5507 -3.8325 32 1 3.4570 -2.2749 -5.1250 33 1 4.2366 -3.1652 -7.2800 34 1 4.3698 -1.6991 -9.2484 35 1 4.0741 0.5289 -10.3227 36 1 2.9124 1.5775 -6.8884 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113159420.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:15 Heat of formation + Delta-G solvation = -83.212276 kcal Electronic energy + Delta-G solvation = -20123.166127 eV Core-core repulsion = 16766.106336 eV Total energy + Delta-G solvation = -3357.059791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.55768 -39.40151 -38.58392 -37.09728 -34.82670 -32.48829 -31.57407 -30.84163 -29.56380 -27.45323 -25.29421 -25.12801 -22.67832 -21.81026 -20.77084 -19.58707 -18.46467 -17.44040 -16.63067 -16.37090 -16.26155 -15.82222 -15.41530 -15.14906 -14.85836 -14.56300 -14.14752 -14.00280 -13.89750 -13.26433 -12.75144 -12.59485 -12.41867 -12.18190 -11.84300 -11.32566 -11.24497 -11.10781 -10.99288 -10.80770 -10.39855 -10.32540 -10.13426 -9.34036 -9.18050 -9.11850 -8.57585 -8.48209 -8.05566 -6.19072 -4.26350 0.32808 1.14216 2.16625 2.76497 3.17692 3.21322 3.28730 3.30388 3.52324 3.88614 4.16118 4.33706 4.48259 4.66630 4.70833 4.85823 4.97687 5.11701 5.15281 5.15815 5.27981 5.37319 5.63036 5.93417 6.01870 6.04877 6.34701 6.71501 6.84536 7.02860 7.10504 7.17773 7.32916 7.47962 7.61255 7.79754 8.00937 8.52476 8.71350 8.97893 9.40022 10.89087 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.039561 B = 0.002924 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.601115 B = 9573.500969 C =10029.488399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.265 3.735 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.704 5.704 13 C 0.502 3.498 14 O -0.530 6.530 15 C 0.038 3.962 16 O -0.284 6.284 17 C 0.124 3.876 18 C -0.180 4.180 19 C -0.093 4.093 20 C -0.113 4.113 21 C -0.156 4.156 22 C 0.383 3.617 23 O -0.454 6.454 24 C -0.092 4.092 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.019 0.981 28 H 0.265 0.735 29 H 0.390 0.610 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.853 -9.736 -20.042 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.164 3.836 3 H 0.073 0.927 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.517 5.517 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.211 1.211 12 N -0.354 5.354 13 C 0.285 3.715 14 O -0.406 6.406 15 C -0.041 4.041 16 O -0.196 6.196 17 C 0.077 3.923 18 C -0.199 4.199 19 C -0.111 4.111 20 C -0.132 4.132 21 C -0.157 4.157 22 C 0.241 3.759 23 O -0.327 6.327 24 C -0.111 4.111 25 H 0.048 0.952 26 H 0.098 0.902 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.125 0.875 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.323 -7.884 -19.797 21.964 hybrid contribution 0.381 -1.480 1.074 1.868 sum 5.703 -9.364 -18.722 21.697 Atomic orbital electron populations 1.22032 0.98579 0.98865 1.00808 1.18806 0.90800 0.94470 0.79571 0.92710 1.21169 1.35712 1.10514 0.90222 0.91951 1.24899 0.94904 0.94711 0.99084 1.69967 1.41821 1.15780 1.24166 0.86450 0.78641 0.79793 0.82311 1.20515 1.19810 1.21065 1.46415 1.65406 1.13614 1.09961 1.19828 0.79779 0.87769 0.84130 1.90723 1.49700 1.15610 1.84585 1.22703 1.02635 0.92578 0.86156 1.86246 1.80263 1.37442 1.15622 1.19038 0.94773 0.92234 0.86217 1.21600 1.03760 0.94733 0.99833 1.20910 0.98305 0.99988 0.91939 1.21235 1.00301 0.92382 0.99239 1.20735 1.03735 0.95707 0.95569 1.24091 0.73204 0.87083 0.91552 1.90558 1.35629 1.19489 1.86986 1.20723 0.99900 1.00741 0.89749 0.95190 0.90248 0.96180 0.92464 0.77794 0.89307 0.89394 0.84758 0.85064 0.84951 0.87482 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.32 37.16 0.35 -3.15 16 2 C 0.26 6.62 2.45 -69.08 -0.17 6.45 16 3 H 0.06 1.61 7.57 -51.93 -0.39 1.21 16 4 C -0.54 -13.94 8.69 -34.44 -0.30 -14.24 16 5 H 0.06 1.53 7.73 -52.49 -0.41 1.12 16 6 C 0.07 1.81 5.21 -17.82 -0.09 1.71 16 7 N -0.88 -24.79 11.92 55.43 0.66 -24.12 16 8 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.70 -14.02 5.07 -54.93 -0.28 -14.30 16 13 C 0.50 9.91 7.87 -10.98 -0.09 9.82 16 14 O -0.53 -13.16 16.16 -14.35 -0.23 -13.39 16 15 C 0.04 0.53 5.22 36.01 0.19 0.72 16 16 O -0.28 -4.57 9.67 -39.40 -0.38 -4.95 16 17 C 0.12 1.60 6.68 -39.29 -0.26 1.34 16 18 C -0.18 -1.76 9.04 -39.32 -0.36 -2.12 16 19 C -0.09 -0.71 10.02 -39.67 -0.40 -1.11 16 20 C -0.11 -0.81 9.79 -39.10 -0.38 -1.19 16 21 C -0.16 -1.50 5.87 -105.08 -0.62 -2.11 16 22 C 0.38 3.24 11.46 34.36 0.39 3.64 16 23 O -0.45 -5.90 17.16 5.58 0.10 -5.80 16 24 C -0.09 -1.17 9.54 -38.94 -0.37 -1.54 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.08 2.09 6.60 -51.93 -0.34 1.75 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.39 6.35 8.53 -40.82 -0.35 6.00 16 30 H 0.09 0.99 7.64 -51.93 -0.40 0.59 16 31 H 0.09 0.95 7.67 -51.93 -0.40 0.56 16 32 H 0.13 1.05 6.28 -52.49 -0.33 0.73 16 33 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.13 0.49 8.06 -52.48 -0.42 0.06 16 35 H 0.11 0.40 8.06 -52.49 -0.42 -0.02 16 36 H 0.14 1.99 7.65 -52.49 -0.40 1.58 16 LS Contribution 320.42 15.07 4.83 4.83 Total: -1.00 -34.24 320.42 -6.70 -40.94 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.26 Total: 3.33 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -2.11 Total: -1.78 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.38 Total: -38.43 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.52 Total: -24.15 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.24 -6.70 -40.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113159420.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.275 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds