Wall clock time and date at job start Mon Mar 30 2020 01:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 O 1.42905 * 109.46650 * 180.02562 * 15 13 12 17 17 C 1.35916 * 116.99321 * 179.97438 * 16 15 13 18 18 C 1.38898 * 119.97340 * 359.72070 * 17 16 15 19 19 C 1.38287 * 120.29077 * 179.76328 * 18 17 16 20 20 C 1.37932 * 120.23744 * 0.51440 * 19 18 17 21 21 C 1.39835 * 119.93688 * 359.74557 * 20 19 18 22 22 C 1.47184 * 120.14817 * 180.02562 * 21 20 19 23 23 O 1.21257 * 119.99499 * 359.97438 * 22 21 20 24 24 C 1.38383 * 119.96662 * 179.97438 * 17 16 15 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 30 30 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 31 31 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 32 32 H 1.08001 * 119.85204 * 0.02562 * 18 17 16 33 33 H 1.08003 * 119.87817 * 180.26325 * 19 18 17 34 34 H 1.08005 * 120.03000 * 179.76912 * 20 19 18 35 35 H 1.07997 * 120.00448 * 179.97438 * 22 21 20 36 36 H 1.08002 * 120.11860 * 359.95791 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 8 2.6972 0.1898 4.6816 17 6 3.1316 -0.2943 5.8750 18 6 3.4990 -1.6289 5.9901 19 6 3.9465 -2.1273 7.2000 20 6 4.0215 -1.3050 8.3049 21 6 3.6489 0.0388 8.2013 22 6 3.7276 0.9205 9.3772 23 8 4.1157 0.4817 10.4389 24 6 3.2024 0.5416 6.9755 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7088 1.1611 -3.4845 29 1 2.2490 -1.6316 1.1527 30 1 1.9776 -1.5506 3.8326 31 1 3.6492 -1.1202 3.3980 32 1 3.4389 -2.2792 5.1299 33 1 4.2345 -3.1650 7.2809 34 1 4.3679 -1.6987 9.2491 35 1 3.4397 1.9581 9.2945 36 1 2.9137 1.5786 6.8879 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113159423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:16 Heat of formation + Delta-G solvation = -82.921663 kcal Electronic energy + Delta-G solvation = -20073.774515 eV Core-core repulsion = 16716.727326 eV Total energy + Delta-G solvation = -3357.047189 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56883 -39.44932 -38.61995 -37.05803 -34.85711 -32.52378 -31.81633 -30.64175 -29.50219 -27.48622 -25.33147 -25.03120 -22.89822 -21.74112 -20.73764 -19.61146 -18.34394 -17.59439 -16.53581 -16.35022 -16.28252 -15.92523 -15.61455 -15.20806 -14.69512 -14.58311 -14.17140 -14.01139 -13.90467 -13.30885 -12.82027 -12.60912 -12.44172 -12.07021 -11.78339 -11.42990 -11.23766 -11.13650 -11.01147 -10.80252 -10.37491 -10.30284 -10.13881 -9.36386 -9.18657 -9.13093 -8.62649 -8.49076 -8.06099 -6.19003 -4.29032 0.30532 1.13982 2.14444 2.74107 3.15027 3.20388 3.27349 3.28750 3.51390 3.89505 4.10428 4.31296 4.47481 4.65725 4.85696 4.88542 5.04117 5.09687 5.13092 5.13954 5.14631 5.31330 5.61207 5.89435 6.00429 6.10882 6.33009 6.74257 6.87901 7.05625 7.06497 7.14884 7.32281 7.46553 7.60830 7.82423 8.06839 8.50122 8.68325 8.95304 9.38416 10.86997 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.046467 B = 0.002800 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.430215 B = 9999.124532 C =10357.191374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.704 5.704 13 C 0.503 3.497 14 O -0.531 6.531 15 C 0.038 3.962 16 O -0.284 6.284 17 C 0.122 3.878 18 C -0.179 4.179 19 C -0.093 4.093 20 C -0.104 4.104 21 C -0.157 4.157 22 C 0.387 3.613 23 O -0.461 6.461 24 C -0.100 4.100 25 H 0.015 0.985 26 H 0.092 0.908 27 H 0.027 0.973 28 H 0.265 0.735 29 H 0.390 0.610 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.135 0.865 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.649 -5.689 17.197 18.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.731 3.269 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.354 5.354 13 C 0.285 3.715 14 O -0.408 6.408 15 C -0.041 4.041 16 O -0.196 6.196 17 C 0.076 3.924 18 C -0.197 4.197 19 C -0.111 4.111 20 C -0.122 4.122 21 C -0.158 4.158 22 C 0.246 3.754 23 O -0.334 6.334 24 C -0.119 4.119 25 H 0.035 0.965 26 H 0.110 0.890 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.126 0.874 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.478 -4.731 17.573 18.741 hybrid contribution 0.407 -1.254 -1.190 1.776 sum 4.885 -5.985 16.382 18.113 Atomic orbital electron populations 1.22095 0.98275 0.99241 1.01093 1.18805 0.91148 0.94048 0.79509 0.93178 1.21187 1.32697 1.13365 0.90206 0.91984 1.24898 0.94737 0.94964 0.99113 1.69901 1.35617 1.22401 1.24025 0.86420 0.78639 0.79779 0.82087 1.20513 1.19839 1.21017 1.46439 1.65315 1.13645 1.09985 1.19823 0.79757 0.87752 0.84120 1.90714 1.49840 1.15638 1.84606 1.22704 1.02660 0.92592 0.86127 1.86226 1.80341 1.37439 1.15602 1.19005 0.94946 0.92237 0.86219 1.21610 1.03584 0.94783 0.99763 1.20943 0.98201 1.00066 0.91908 1.21306 0.99007 0.92668 0.99215 1.20715 1.03811 0.95900 0.95375 1.24103 0.72408 0.93430 0.85485 1.90519 1.33920 1.78789 1.30159 1.20658 1.01076 1.00468 0.89703 0.96547 0.88975 0.95352 0.92459 0.77763 0.89392 0.89314 0.84744 0.85108 0.84968 0.87413 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 2 C 0.27 6.55 2.56 -69.09 -0.18 6.37 16 3 H 0.05 1.43 7.58 -51.92 -0.39 1.04 16 4 C -0.54 -13.72 8.73 -34.44 -0.30 -14.02 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.35 11.32 55.43 0.63 -23.72 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 10 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.70 -13.73 5.07 -54.93 -0.28 -14.01 16 13 C 0.50 9.57 7.87 -10.98 -0.09 9.49 16 14 O -0.53 -12.69 16.16 -14.36 -0.23 -12.93 16 15 C 0.04 0.51 5.22 36.01 0.19 0.69 16 16 O -0.28 -4.22 9.67 -39.39 -0.38 -4.60 16 17 C 0.12 1.45 6.68 -39.28 -0.26 1.19 16 18 C -0.18 -1.74 9.04 -39.32 -0.36 -2.10 16 19 C -0.09 -0.81 10.02 -39.68 -0.40 -1.21 16 20 C -0.10 -0.98 9.59 -39.10 -0.38 -1.35 16 21 C -0.16 -1.50 5.87 -105.08 -0.62 -2.11 16 22 C 0.39 3.28 11.46 34.36 0.39 3.68 16 23 O -0.46 -5.46 17.16 5.58 0.10 -5.36 16 24 C -0.10 -1.04 9.73 -38.94 -0.38 -1.42 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.39 6.25 8.54 -40.82 -0.35 5.90 16 30 H 0.09 0.92 7.64 -51.93 -0.40 0.52 16 31 H 0.09 0.94 7.67 -51.93 -0.40 0.54 16 32 H 0.13 1.05 6.28 -52.49 -0.33 0.72 16 33 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.13 1.16 7.64 -52.48 -0.40 0.76 16 35 H 0.11 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 319.49 15.07 4.81 4.81 Total: -1.00 -32.85 319.49 -6.73 -39.58 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.24 Total: 3.53 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -2.12 Total: -2.39 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.35 Total: -37.73 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.52 Total: -22.88 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.85 -6.73 -39.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113159423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.341 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds