Wall clock time and date at job start Mon Mar 30 2020 01:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 O 1.42905 * 109.46650 * 180.02562 * 15 13 12 17 17 C 1.35916 * 116.99321 * 179.97438 * 16 15 13 18 18 C 1.38898 * 119.97340 * 359.72070 * 17 16 15 19 19 C 1.38287 * 120.29077 * 179.76328 * 18 17 16 20 20 C 1.37932 * 120.23744 * 0.51440 * 19 18 17 21 21 C 1.39835 * 119.93688 * 359.74557 * 20 19 18 22 22 C 1.47184 * 120.14817 * 180.02562 * 21 20 19 23 23 O 1.21257 * 119.99499 * 359.97438 * 22 21 20 24 24 C 1.38383 * 119.96662 * 179.97438 * 17 16 15 25 25 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 26 26 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 27 27 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 30 30 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 31 31 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 32 32 H 1.08001 * 119.85204 * 0.02562 * 18 17 16 33 33 H 1.08003 * 119.87817 * 180.26325 * 19 18 17 34 34 H 1.08005 * 120.03000 * 179.76912 * 20 19 18 35 35 H 1.07997 * 120.00448 * 179.97438 * 22 21 20 36 36 H 1.08002 * 120.11860 * 359.95791 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 8 2.6972 0.1898 4.6816 17 6 3.1316 -0.2943 5.8750 18 6 3.4990 -1.6289 5.9901 19 6 3.9465 -2.1273 7.2000 20 6 4.0215 -1.3050 8.3049 21 6 3.6489 0.0388 8.2013 22 6 3.7276 0.9205 9.3772 23 8 4.1157 0.4817 10.4389 24 6 3.2024 0.5416 6.9755 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7088 1.1611 -3.4845 29 1 2.2490 -1.6316 1.1527 30 1 1.9776 -1.5506 3.8326 31 1 3.6492 -1.1202 3.3980 32 1 3.4389 -2.2792 5.1299 33 1 4.2345 -3.1650 7.2809 34 1 4.3679 -1.6987 9.2491 35 1 3.4397 1.9581 9.2945 36 1 2.9137 1.5786 6.8879 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113159423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:16 Heat of formation + Delta-G solvation = -104.751789 kcal Electronic energy + Delta-G solvation = -20074.721140 eV Core-core repulsion = 16716.727326 eV Total energy + Delta-G solvation = -3357.993815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.47571 -40.55873 -39.79262 -37.97157 -36.68376 -34.37782 -32.55640 -31.77844 -30.89361 -28.74022 -27.33413 -25.81622 -23.63220 -23.29096 -21.78854 -21.21926 -19.25651 -19.03977 -17.74340 -17.41261 -17.29507 -16.98916 -16.90221 -16.62369 -16.00772 -15.57228 -15.37122 -15.17162 -14.72582 -14.62557 -14.42054 -13.90423 -13.74230 -13.41888 -12.99476 -12.88295 -12.79823 -12.73570 -12.26953 -12.22505 -12.12151 -12.06579 -11.12084 -10.84664 -10.79187 -10.58744 -10.07252 -9.82577 -9.30269 -8.17673 -6.35391 -0.40615 0.39030 1.45787 1.46472 1.46875 1.57296 1.67577 1.68135 2.40669 2.78879 2.83858 3.13385 3.33949 3.67460 3.88875 3.96384 4.10795 4.15007 4.18050 4.31754 4.42968 4.53661 4.74741 4.91729 4.93810 5.08371 5.15929 5.29043 5.41019 5.41212 5.57309 5.60044 5.67821 5.88130 6.08644 6.30970 6.41512 6.72093 6.89152 7.31302 7.49087 8.88773 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.046467 B = 0.002800 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.430215 B = 9999.124532 C =10357.191374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.271 3.729 3 H -0.002 1.002 4 C -0.546 4.546 5 H 0.078 0.922 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.279 1.279 10 H -0.257 1.257 11 H -0.286 1.286 12 N -0.697 5.697 13 C 0.497 3.503 14 O -0.589 6.589 15 C 0.051 3.949 16 O -0.317 6.317 17 C 0.096 3.904 18 C -0.175 4.175 19 C -0.091 4.091 20 C -0.111 4.111 21 C -0.165 4.165 22 C 0.395 3.605 23 O -0.498 6.498 24 C -0.106 4.106 25 H 0.011 0.989 26 H 0.066 0.934 27 H 0.044 0.956 28 H 0.265 0.735 29 H 0.411 0.589 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.136 0.864 35 H 0.149 0.851 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.650 -8.212 17.749 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.168 3.832 3 H 0.016 0.984 4 C -0.584 4.584 5 H 0.096 0.904 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.205 1.205 10 H -0.181 1.181 11 H -0.212 1.212 12 N -0.348 5.348 13 C 0.283 3.717 14 O -0.469 6.469 15 C -0.027 4.027 16 O -0.231 6.231 17 C 0.051 3.949 18 C -0.194 4.194 19 C -0.109 4.109 20 C -0.129 4.129 21 C -0.166 4.166 22 C 0.256 3.744 23 O -0.373 6.373 24 C -0.125 4.125 25 H 0.030 0.970 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.247 0.753 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.175 0.825 33 H 0.177 0.823 34 H 0.154 0.846 35 H 0.165 0.835 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.496 -7.306 18.149 20.322 hybrid contribution 0.106 -0.444 -1.283 1.362 sum 5.602 -7.749 16.866 19.388 Atomic orbital electron populations 1.21918 0.98210 0.99726 0.99605 1.18376 0.91199 0.91978 0.81691 0.98409 1.21547 1.32608 1.13683 0.90530 0.90351 1.25827 0.94867 0.95599 1.02446 1.70059 1.36961 1.24025 1.24648 0.85322 0.77651 0.79287 0.77928 1.20483 1.18093 1.21186 1.46105 1.65163 1.14484 1.09049 1.20828 0.78251 0.87200 0.85429 1.90687 1.52149 1.18449 1.85664 1.22613 1.04972 0.91842 0.83270 1.86158 1.81431 1.38731 1.16742 1.19241 0.96663 0.93599 0.85423 1.21875 1.02551 0.94046 1.00929 1.21265 0.97209 1.01295 0.91101 1.21571 0.98592 0.92914 0.99847 1.20893 1.03855 0.96387 0.95495 1.24619 0.70770 0.94681 0.84285 1.90515 1.35850 1.79595 1.31318 1.20816 1.00980 1.00968 0.89723 0.96970 0.91512 0.93659 0.92556 0.75341 0.85726 0.85913 0.82477 0.82303 0.84590 0.83473 0.83178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.70 9.26 71.98 0.67 -6.03 16 2 C 0.27 13.56 2.56 44.24 0.11 13.68 16 3 H 0.00 -0.12 7.58 -2.38 -0.02 -0.14 16 4 C -0.55 -27.67 8.73 25.60 0.22 -27.45 16 5 H 0.08 3.63 7.74 -2.91 -0.02 3.61 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -51.84 11.32 21.45 0.24 -51.60 16 8 Si 0.97 40.67 29.54 68.60 2.03 42.70 16 9 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 10 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 11 H -0.29 -11.93 7.11 99.48 0.71 -11.23 16 12 N -0.70 -26.61 5.07 -446.09 -2.26 -28.87 16 13 C 0.50 18.70 7.87 87.66 0.69 19.39 16 14 O -0.59 -29.06 16.16 16.00 0.26 -28.80 16 15 C 0.05 1.22 5.22 71.24 0.37 1.60 16 16 O -0.32 -9.03 9.67 -73.57 -0.71 -9.74 16 17 C 0.10 2.11 6.68 22.46 0.15 2.26 16 18 C -0.18 -2.87 9.04 22.44 0.20 -2.66 16 19 C -0.09 -1.30 10.02 22.21 0.22 -1.08 16 20 C -0.11 -1.88 9.59 22.58 0.22 -1.66 16 21 C -0.17 -2.91 5.87 -20.16 -0.12 -3.03 16 22 C 0.40 6.14 11.46 70.17 0.80 6.94 16 23 O -0.50 -11.35 17.16 -2.96 -0.05 -11.40 16 24 C -0.11 -2.07 9.73 22.68 0.22 -1.85 16 25 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 27 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 29 H 0.41 12.16 8.54 -92.71 -0.79 11.37 16 30 H 0.13 2.10 7.64 -2.39 -0.02 2.08 16 31 H 0.12 2.13 7.67 -2.39 -0.02 2.11 16 32 H 0.16 1.75 6.28 -2.91 -0.02 1.73 16 33 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 34 H 0.14 2.17 7.64 -2.91 -0.02 2.15 16 35 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -74.52 319.49 4.03 -70.48 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.32 Total: 16.01 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 4.21 Total: 1.22 kcal Atomic # 7 Polarization: -78.45 SS G_CDS: -2.02 Total: -80.47 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -0.50 Total: -49.94 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -74.52 4.03 -70.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113159423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.268 kcal (2) G-P(sol) polarization free energy of solvation -74.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds