Wall clock time and date at job start Mon Mar 30 2020 01:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21277 * 119.99778 * 2 1 4 4 N 1.34775 * 119.99938 * 179.97438 * 2 1 3 5 5 C 1.39415 * 119.99814 * 185.27336 * 4 2 1 6 6 C 1.39143 * 119.92149 * 33.56056 * 5 4 2 7 7 C 1.37646 * 120.08320 * 180.02562 * 6 5 4 8 8 C 1.39813 * 119.91587 * 0.27554 * 7 6 5 9 9 C 1.47459 * 120.07510 * 179.70283 * 8 7 6 10 10 O 1.21510 * 120.00206 * 359.97438 * 9 8 7 11 11 O 1.34749 * 119.99976 * 180.02562 * 9 8 7 12 12 C 1.45201 * 117.00380 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.46535 * 329.99692 * 12 11 9 14 14 C 1.53004 * 109.47280 * 89.99452 * 12 11 9 15 15 C 1.50694 * 109.47308 * 210.00035 * 12 11 9 16 16 H 1.08007 * 120.00151 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00252 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00272 * 179.97438 * 17 15 12 19 19 Si 1.86810 * 119.99846 * 0.02562 * 17 15 12 20 20 H 1.48496 * 109.46987 * 89.99565 * 19 17 15 21 21 H 1.48497 * 109.46726 * 209.99899 * 19 17 15 22 22 H 1.48501 * 109.46880 * 329.99925 * 19 17 15 23 23 C 1.39809 * 119.84473 * 359.44822 * 8 7 6 24 24 C 1.37648 * 119.91827 * 0.55107 * 23 8 7 25 25 H 1.09006 * 109.46849 * 239.99967 * 1 2 3 26 26 H 1.08998 * 109.47169 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46886 * 120.00558 * 1 2 3 28 28 H 0.96997 * 119.99913 * 5.28659 * 4 2 1 29 29 H 1.08002 * 119.95913 * 359.97438 * 6 5 4 30 30 H 1.07999 * 120.03981 * 180.02562 * 7 6 5 31 31 H 1.08993 * 109.47035 * 180.02562 * 14 12 11 32 32 H 1.08997 * 109.47028 * 300.00567 * 14 12 11 33 33 H 1.09000 * 109.46530 * 60.00283 * 14 12 11 34 34 H 0.97003 * 119.99731 * 180.02562 * 18 17 15 35 35 H 1.07991 * 120.04201 * 180.27950 * 23 8 7 36 36 H 1.07995 * 119.95920 * 179.70261 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5706 -1.1697 0.1115 6 6 4.2076 -0.1973 0.8763 7 6 5.5795 -0.1963 0.9878 8 6 6.3335 -1.1705 0.3265 9 6 7.8039 -1.1688 0.4381 10 8 8.3616 -0.3198 1.1050 11 8 8.5291 -2.1081 -0.2002 12 6 9.9715 -2.0449 -0.0461 13 1 10.2761 -1.0087 0.1009 14 6 10.3917 -2.8771 1.1672 15 6 10.6335 -2.5922 -1.2843 16 1 10.0304 -2.9520 -2.1049 17 6 12.0090 -2.6337 -1.3697 18 7 12.5867 -3.1118 -2.4501 19 14 13.0521 -2.0121 0.0500 20 1 13.3247 -3.1289 0.9900 21 1 14.3361 -1.4817 -0.4745 22 1 12.3244 -0.9316 0.7628 23 6 5.6898 -2.1494 -0.4364 24 6 4.3175 -2.1442 -0.5433 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0276 0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 1.6990 -2.0054 -0.0765 29 1 3.6248 0.5580 1.3826 30 1 6.0731 0.5584 1.5819 31 1 11.4744 -2.8293 1.2831 32 1 9.9129 -2.4812 2.0627 33 1 10.0871 -3.9132 1.0201 34 1 13.5544 -3.1413 -2.5099 35 1 6.2688 -2.9061 -0.9448 36 1 3.8199 -2.8972 -1.1364 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113686229.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:32 Heat of formation + Delta-G solvation = -91.088542 kcal Electronic energy + Delta-G solvation = -20526.058812 eV Core-core repulsion = 17168.657480 eV Total energy + Delta-G solvation = -3357.401332 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.83862 -39.74116 -38.24958 -35.91099 -35.01029 -33.19224 -31.38549 -31.05935 -30.55256 -28.99766 -25.28317 -24.20574 -23.16228 -21.59042 -20.85305 -19.85370 -18.20680 -17.58716 -17.28415 -16.52238 -16.19762 -15.79929 -15.28511 -14.87462 -14.62440 -14.41783 -14.04966 -13.52057 -13.36792 -13.07194 -12.99937 -12.81055 -12.55382 -12.48594 -12.28458 -11.80668 -11.56456 -11.28035 -10.88435 -10.62361 -10.27167 -10.21787 -9.98817 -9.76023 -9.59652 -9.11529 -9.05589 -8.68160 -8.33649 -6.21998 -4.24282 0.71201 1.35249 2.14417 2.67450 2.99785 3.19714 3.32233 3.34849 3.48518 3.91041 4.27250 4.27725 4.71691 4.80605 4.86288 4.87853 5.09323 5.19118 5.24662 5.31951 5.42208 5.48997 5.94141 6.04306 6.11843 6.17958 6.26184 6.30495 6.37591 6.49598 6.63465 6.81559 6.98262 7.03315 7.36256 7.51494 7.70161 8.23332 8.59940 8.84688 9.35188 10.90077 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.045211 B = 0.003353 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.164641 B = 8349.806604 C = 8628.269462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.508 3.492 3 O -0.520 6.520 4 N -0.675 5.675 5 C 0.168 3.832 6 C -0.137 4.137 7 C -0.038 4.038 8 C -0.130 4.130 9 C 0.498 3.502 10 O -0.520 6.520 11 O -0.336 6.336 12 C 0.191 3.809 13 H 0.047 0.953 14 C -0.170 4.170 15 C -0.524 4.524 16 H 0.087 0.913 17 C 0.080 3.920 18 N -0.889 5.889 19 Si 0.879 3.121 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.262 1.262 23 C -0.039 4.039 24 C -0.160 4.160 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.413 0.587 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.269 0.731 35 H 0.148 0.852 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.282 0.934 6.151 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.296 3.704 3 O -0.394 6.394 4 N -0.320 5.320 5 C 0.073 3.927 6 C -0.157 4.157 7 C -0.057 4.057 8 C -0.132 4.132 9 C 0.343 3.657 10 O -0.411 6.411 11 O -0.252 6.252 12 C 0.137 3.863 13 H 0.065 0.935 14 C -0.227 4.227 15 C -0.562 4.562 16 H 0.105 0.895 17 C -0.124 4.124 18 N -0.526 5.526 19 Si 0.708 3.292 20 H -0.200 1.200 21 H -0.217 1.217 22 H -0.187 1.187 23 C -0.058 4.058 24 C -0.181 4.181 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.249 0.751 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.166 0.834 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.537 1.903 6.236 24.424 hybrid contribution 0.553 -0.197 0.655 0.880 sum -22.985 1.706 6.891 24.056 Atomic orbital electron populations 1.21936 0.90532 1.06117 1.04640 1.21069 0.90987 0.83135 0.75193 1.90785 1.70580 1.31170 1.46900 1.43558 1.05375 1.10125 1.72949 1.17950 0.82646 0.96731 0.95363 1.20990 0.94299 1.00213 1.00235 1.21166 0.92774 0.96120 0.95669 1.19364 0.90579 0.99362 1.03879 1.21031 0.88245 0.79573 0.76880 1.90769 1.73062 1.37945 1.39340 1.86557 1.24059 1.49328 1.65260 1.20945 0.72029 0.97542 0.95760 0.93550 1.22522 1.00563 1.01809 0.97808 1.20775 0.91771 1.42997 1.00651 0.89459 1.24728 0.97177 0.94434 0.96024 1.69838 1.10595 1.44871 1.27257 0.86970 0.79945 0.79903 0.82376 1.19985 1.21687 1.18650 1.21396 0.93634 0.96499 0.94242 1.20852 0.93892 1.01153 1.02162 0.88931 0.88484 0.88999 0.75095 0.84331 0.84208 0.92527 0.94364 0.91744 0.92068 0.83432 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.65 10.32 36.01 0.37 -0.28 16 2 C 0.51 4.40 7.67 -10.98 -0.08 4.31 16 3 O -0.52 -7.04 14.76 5.56 0.08 -6.96 16 4 N -0.67 -5.15 5.32 -9.86 -0.05 -5.20 16 5 C 0.17 1.88 6.27 -83.73 -0.53 1.36 16 6 C -0.14 -1.81 8.63 -39.46 -0.34 -2.15 16 7 C -0.04 -0.58 9.58 -39.21 -0.38 -0.95 16 8 C -0.13 -2.18 5.88 -104.97 -0.62 -2.79 16 9 C 0.50 10.50 7.86 34.49 0.27 10.77 16 10 O -0.52 -12.10 15.60 -19.27 -0.30 -12.40 16 11 O -0.34 -7.81 9.10 -40.63 -0.37 -8.18 16 12 C 0.19 4.90 2.16 -27.88 -0.06 4.84 16 13 H 0.05 1.26 6.22 -51.93 -0.32 0.94 16 14 C -0.17 -3.92 9.03 37.16 0.34 -3.58 16 15 C -0.52 -15.12 9.48 -34.44 -0.33 -15.44 16 16 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 17 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 18 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 19 Si 0.88 21.86 24.37 -169.99 -4.14 17.72 16 20 H -0.27 -6.49 6.87 56.52 0.39 -6.11 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 23 C -0.04 -0.55 9.60 -39.21 -0.38 -0.92 16 24 C -0.16 -1.76 9.94 -39.46 -0.39 -2.15 16 25 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 26 H 0.10 0.41 8.12 -51.93 -0.42 -0.01 16 27 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.41 1.53 8.81 -40.82 -0.36 1.17 16 29 H 0.14 1.80 6.41 -52.49 -0.34 1.47 16 30 H 0.14 2.07 7.64 -52.49 -0.40 1.67 16 31 H 0.06 1.32 3.27 -51.93 -0.17 1.15 16 32 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.15 2.05 7.60 -52.49 -0.40 1.65 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 310.55 15.07 4.68 4.68 Total: -1.00 -35.44 310.55 -5.68 -41.11 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -4.13 Total: 0.09 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -2.22 Total: -4.80 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.72 Total: -31.27 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.59 Total: -27.54 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.44 -5.68 -41.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113686229.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.975 kcal (2) G-P(sol) polarization free energy of solvation -35.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds