Wall clock time and date at job start Mon Mar 30 2020 01:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21277 * 119.99778 * 2 1 4 4 N 1.34775 * 119.99938 * 179.97438 * 2 1 3 5 5 C 1.39415 * 119.99814 * 185.27336 * 4 2 1 6 6 C 1.39143 * 119.92149 * 33.56056 * 5 4 2 7 7 C 1.37646 * 120.08320 * 180.02562 * 6 5 4 8 8 C 1.39813 * 119.91587 * 0.27554 * 7 6 5 9 9 C 1.47459 * 120.07510 * 179.70283 * 8 7 6 10 10 O 1.21510 * 120.00206 * 359.97438 * 9 8 7 11 11 O 1.34749 * 119.99976 * 180.02562 * 9 8 7 12 12 C 1.45201 * 117.00380 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.46535 * 329.99692 * 12 11 9 14 14 C 1.53004 * 109.47280 * 89.99452 * 12 11 9 15 15 C 1.50694 * 109.47308 * 210.00035 * 12 11 9 16 16 H 1.08007 * 120.00151 * 359.97438 * 15 12 11 17 17 C 1.37877 * 120.00252 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00272 * 179.97438 * 17 15 12 19 19 Si 1.86810 * 119.99846 * 0.02562 * 17 15 12 20 20 H 1.48496 * 109.46987 * 89.99565 * 19 17 15 21 21 H 1.48497 * 109.46726 * 209.99899 * 19 17 15 22 22 H 1.48501 * 109.46880 * 329.99925 * 19 17 15 23 23 C 1.39809 * 119.84473 * 359.44822 * 8 7 6 24 24 C 1.37648 * 119.91827 * 0.55107 * 23 8 7 25 25 H 1.09006 * 109.46849 * 239.99967 * 1 2 3 26 26 H 1.08998 * 109.47169 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46886 * 120.00558 * 1 2 3 28 28 H 0.96997 * 119.99913 * 5.28659 * 4 2 1 29 29 H 1.08002 * 119.95913 * 359.97438 * 6 5 4 30 30 H 1.07999 * 120.03981 * 180.02562 * 7 6 5 31 31 H 1.08993 * 109.47035 * 180.02562 * 14 12 11 32 32 H 1.08997 * 109.47028 * 300.00567 * 14 12 11 33 33 H 1.09000 * 109.46530 * 60.00283 * 14 12 11 34 34 H 0.97003 * 119.99731 * 180.02562 * 18 17 15 35 35 H 1.07991 * 120.04201 * 180.27950 * 23 8 7 36 36 H 1.07995 * 119.95920 * 179.70261 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5706 -1.1697 0.1115 6 6 4.2076 -0.1973 0.8763 7 6 5.5795 -0.1963 0.9878 8 6 6.3335 -1.1705 0.3265 9 6 7.8039 -1.1688 0.4381 10 8 8.3616 -0.3198 1.1050 11 8 8.5291 -2.1081 -0.2002 12 6 9.9715 -2.0449 -0.0461 13 1 10.2761 -1.0087 0.1009 14 6 10.3917 -2.8771 1.1672 15 6 10.6335 -2.5922 -1.2843 16 1 10.0304 -2.9520 -2.1049 17 6 12.0090 -2.6337 -1.3697 18 7 12.5867 -3.1118 -2.4501 19 14 13.0521 -2.0121 0.0500 20 1 13.3247 -3.1289 0.9900 21 1 14.3361 -1.4817 -0.4745 22 1 12.3244 -0.9316 0.7628 23 6 5.6898 -2.1494 -0.4364 24 6 4.3175 -2.1442 -0.5433 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0276 0.0005 27 1 -0.3633 -0.5139 -0.8899 28 1 1.6990 -2.0054 -0.0765 29 1 3.6248 0.5580 1.3826 30 1 6.0731 0.5584 1.5819 31 1 11.4744 -2.8293 1.2831 32 1 9.9129 -2.4812 2.0627 33 1 10.0871 -3.9132 1.0201 34 1 13.5544 -3.1413 -2.5099 35 1 6.2688 -2.9061 -0.9448 36 1 3.8199 -2.8972 -1.1364 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113686229.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:32 Heat of formation + Delta-G solvation = -115.975648 kcal Electronic energy + Delta-G solvation = -20527.137998 eV Core-core repulsion = 17168.657480 eV Total energy + Delta-G solvation = -3358.480518 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.81497 -41.22760 -39.37126 -37.67469 -35.95309 -35.29275 -32.85215 -32.11381 -31.88931 -29.80148 -27.37118 -25.51079 -24.25790 -23.14158 -21.83666 -21.36683 -19.52021 -18.92196 -18.50958 -18.00494 -17.87366 -17.02725 -16.61553 -16.56374 -15.74555 -15.44368 -15.20620 -14.92553 -14.56565 -14.50919 -14.33188 -14.10528 -13.91464 -13.63847 -13.43100 -13.24216 -13.00897 -12.87061 -12.40003 -12.23375 -11.81431 -11.70221 -11.56759 -11.47660 -11.25113 -11.02040 -10.84486 -10.10698 -9.33030 -8.45679 -6.54415 -0.45560 0.30305 1.22496 1.28694 1.30807 1.40244 1.69429 1.83668 2.03111 2.19002 2.72841 2.87048 3.63518 3.72795 3.86622 3.89773 4.20406 4.22295 4.28644 4.39098 4.44343 4.50819 4.56956 4.69164 4.71076 4.92921 5.01712 5.07572 5.17218 5.17931 5.28605 5.30663 5.33990 5.58883 5.81327 6.11438 6.37336 6.49098 6.81818 7.07557 7.10149 8.70143 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.045211 B = 0.003353 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.164641 B = 8349.806604 C = 8628.269462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.504 3.496 3 O -0.574 6.574 4 N -0.659 5.659 5 C 0.183 3.817 6 C -0.144 4.144 7 C -0.042 4.042 8 C -0.161 4.161 9 C 0.495 3.505 10 O -0.550 6.550 11 O -0.344 6.344 12 C 0.192 3.808 13 H 0.028 0.972 14 C -0.163 4.163 15 C -0.539 4.539 16 H 0.050 0.950 17 C 0.032 3.968 18 N -0.928 5.928 19 Si 0.939 3.061 20 H -0.248 1.248 21 H -0.282 1.282 22 H -0.261 1.261 23 C -0.040 4.040 24 C -0.144 4.144 25 H 0.120 0.880 26 H 0.091 0.909 27 H 0.119 0.881 28 H 0.436 0.564 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.276 0.724 35 H 0.146 0.854 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.896 0.058 7.115 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.295 3.705 3 O -0.453 6.453 4 N -0.306 5.306 5 C 0.087 3.913 6 C -0.164 4.164 7 C -0.061 4.061 8 C -0.163 4.163 9 C 0.343 3.657 10 O -0.444 6.444 11 O -0.260 6.260 12 C 0.138 3.862 13 H 0.046 0.954 14 C -0.220 4.220 15 C -0.576 4.576 16 H 0.068 0.932 17 C -0.168 4.168 18 N -0.567 5.567 19 Si 0.764 3.236 20 H -0.173 1.173 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.059 4.059 24 C -0.164 4.164 25 H 0.138 0.862 26 H 0.110 0.890 27 H 0.138 0.862 28 H 0.277 0.723 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.163 0.837 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -26.214 0.977 7.199 27.202 hybrid contribution 1.132 0.086 0.257 1.164 sum -25.082 1.063 7.456 26.188 Atomic orbital electron populations 1.21975 0.86207 1.06691 1.07221 1.22061 0.92904 0.82219 0.73335 1.90778 1.71970 1.33158 1.49347 1.43571 1.03762 1.11394 1.71856 1.18082 0.84591 0.95307 0.93339 1.21036 0.93429 1.01021 1.00940 1.21111 0.93575 0.95705 0.95703 1.19200 0.87817 1.02007 1.07228 1.21804 0.89816 0.78370 0.75745 1.90732 1.73959 1.38896 1.40776 1.86542 1.22888 1.50375 1.66198 1.20676 0.73493 0.96618 0.95436 0.95411 1.22408 1.00653 1.01898 0.97075 1.20921 0.92208 1.43306 1.01182 0.93184 1.25534 0.98297 0.94300 0.98685 1.69950 1.11392 1.46004 1.29310 0.86007 0.78113 0.80076 0.79440 1.17308 1.20897 1.18527 1.21472 0.95137 0.95648 0.93650 1.21161 0.92443 1.01476 1.01349 0.86193 0.89028 0.86222 0.72308 0.84286 0.85061 0.92474 0.92574 0.90771 0.91471 0.83652 0.80673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 10.32 71.24 0.74 0.16 16 2 C 0.50 7.29 7.67 87.66 0.67 7.96 16 3 O -0.57 -14.91 14.76 -3.02 -0.04 -14.96 16 4 N -0.66 -7.61 5.32 -303.48 -1.61 -9.22 16 5 C 0.18 3.64 6.27 38.37 0.24 3.88 16 6 C -0.14 -3.69 8.63 22.35 0.19 -3.50 16 7 C -0.04 -1.28 9.58 22.51 0.22 -1.07 16 8 C -0.16 -5.47 5.88 -20.09 -0.12 -5.59 16 9 C 0.50 21.59 7.86 70.25 0.55 22.15 16 10 O -0.55 -26.55 15.60 19.80 0.31 -26.24 16 11 O -0.34 -16.48 9.10 -56.60 -0.52 -16.99 16 12 C 0.19 10.05 2.16 29.85 0.06 10.12 16 13 H 0.03 1.56 6.22 -2.38 -0.01 1.54 16 14 C -0.16 -7.41 9.03 71.98 0.65 -6.76 16 15 C -0.54 -32.09 9.48 25.60 0.24 -31.85 16 16 H 0.05 3.26 8.06 -2.91 -0.02 3.23 16 17 C 0.03 1.86 5.45 84.65 0.46 2.33 16 18 N -0.93 -57.17 13.96 21.45 0.30 -56.87 16 19 Si 0.94 44.90 24.37 68.60 1.67 46.57 16 20 H -0.25 -10.86 6.87 99.48 0.68 -10.17 16 21 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 22 H -0.26 -12.37 6.53 99.48 0.65 -11.72 16 23 C -0.04 -1.09 9.60 22.51 0.22 -0.88 16 24 C -0.14 -2.74 9.94 22.35 0.22 -2.52 16 25 H 0.12 -0.16 8.14 -2.38 -0.02 -0.18 16 26 H 0.09 0.51 8.12 -2.39 -0.02 0.49 16 27 H 0.12 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.44 1.05 8.81 -92.71 -0.82 0.23 16 29 H 0.14 3.57 6.41 -2.91 -0.02 3.55 16 30 H 0.13 4.11 7.64 -2.91 -0.02 4.09 16 31 H 0.06 2.57 3.27 -2.39 -0.01 2.56 16 32 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.15 3.99 7.60 -2.92 -0.02 3.96 16 36 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -80.78 310.55 4.68 -76.11 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.22 Total: 7.17 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 4.35 Total: -5.57 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -1.31 Total: -66.09 kcal Atomic # 8 Polarization: -57.94 SS G_CDS: -0.25 Total: -58.19 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.67 Total: 46.57 kcal Total: -80.78 4.68 -76.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113686229.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.869 kcal (2) G-P(sol) polarization free energy of solvation -80.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds