Wall clock time and date at job start Mon Mar 30 2020 01:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21271 * 119.99346 * 2 1 4 4 N 1.34772 * 120.00224 * 179.97438 * 2 1 3 5 5 C 1.39409 * 119.99992 * 184.58328 * 4 2 1 6 6 C 1.39148 * 119.91964 * 324.85582 * 5 4 2 7 7 C 1.37653 * 120.07755 * 179.97438 * 6 5 4 8 8 C 1.39808 * 119.91921 * 0.02562 * 7 6 5 9 9 C 1.47463 * 120.07987 * 179.97438 * 8 7 6 10 10 O 1.21507 * 119.99560 * 359.97438 * 9 8 7 11 11 O 1.34747 * 120.00037 * 179.97438 * 9 8 7 12 12 C 1.45204 * 116.99682 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.47164 * 29.99864 * 12 11 9 14 14 C 1.52999 * 109.46950 * 269.99716 * 12 11 9 15 15 C 1.50698 * 109.46946 * 150.00256 * 12 11 9 16 16 H 1.07998 * 120.00318 * 359.97438 * 15 12 11 17 17 C 1.37875 * 119.99766 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00149 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99845 * 179.97438 * 17 15 12 20 20 H 1.48504 * 109.47332 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47202 * 299.99903 * 19 17 15 22 22 H 1.48493 * 109.47241 * 60.00023 * 19 17 15 23 23 C 1.39814 * 119.84327 * 0.25104 * 8 7 6 24 24 C 1.37647 * 119.91760 * 359.51406 * 23 8 7 25 25 H 1.09001 * 109.47234 * 269.99810 * 1 2 3 26 26 H 1.09001 * 109.47197 * 30.00240 * 1 2 3 27 27 H 1.09004 * 109.46672 * 150.00225 * 1 2 3 28 28 H 0.97003 * 119.99850 * 4.58757 * 4 2 1 29 29 H 1.07996 * 119.96468 * 359.97438 * 6 5 4 30 30 H 1.07994 * 120.03780 * 179.97438 * 7 6 5 31 31 H 1.09005 * 109.47176 * 180.02562 * 14 12 11 32 32 H 1.09003 * 109.47617 * 300.00066 * 14 12 11 33 33 H 1.09004 * 109.47349 * 60.00570 * 14 12 11 34 34 H 0.97003 * 119.99901 * 180.02562 * 18 17 15 35 35 H 1.08001 * 120.03659 * 179.72716 * 23 8 7 36 36 H 1.08002 * 119.95697 * 180.21192 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.5717 -1.1690 0.0970 6 6 4.3107 -0.1570 -0.5080 7 6 5.6841 -0.1554 -0.4144 8 6 6.3363 -1.1723 0.2892 9 6 7.8074 -1.1743 0.3913 10 8 8.4541 -0.2916 -0.1369 11 8 8.4343 -2.1550 1.0703 12 6 9.8838 -2.0934 1.1290 13 1 10.2052 -1.0526 1.0890 14 6 10.4751 -2.8557 -0.0585 15 6 10.3615 -2.7176 2.4147 16 1 9.6471 -3.1200 3.1177 17 6 11.7105 -2.7751 2.6936 18 7 12.5805 -2.2855 1.8374 19 14 12.3025 -3.5482 4.2877 20 1 13.7850 -3.4854 4.3477 21 1 11.7292 -2.8075 5.4400 22 1 11.8641 -4.9659 4.3430 23 6 5.5908 -2.1906 0.8910 24 6 4.2175 -2.1832 0.7973 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 1.6983 -2.0059 -0.0663 29 1 3.8063 0.6280 -1.0517 30 1 6.2570 0.6301 -0.8846 31 1 11.5633 -2.8099 -0.0143 32 1 10.1538 -3.8965 -0.0186 33 1 10.1297 -2.4042 -0.9886 34 1 13.5296 -2.3263 2.0335 35 1 6.0917 -2.9801 1.4315 36 1 3.6408 -2.9676 1.2648 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113686231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:34 Heat of formation + Delta-G solvation = -99.900169 kcal Electronic energy + Delta-G solvation = -20463.634239 eV Core-core repulsion = 17105.850806 eV Total energy + Delta-G solvation = -3357.783433 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 277.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.78922 -39.55978 -38.13327 -35.68904 -34.94412 -33.23697 -31.30635 -30.97831 -29.71507 -28.76439 -25.30545 -24.08762 -23.05578 -21.46720 -20.83027 -19.73597 -18.12807 -17.37776 -17.21093 -16.51969 -15.78091 -15.74771 -14.93176 -14.80428 -14.57561 -14.31601 -14.05657 -13.45846 -13.31387 -13.07131 -12.93704 -12.54388 -12.42914 -12.17490 -11.79620 -11.33087 -11.16495 -11.04291 -10.83593 -10.52519 -10.37118 -10.26639 -10.15451 -9.66495 -9.51074 -8.98654 -8.89222 -8.47614 -8.28987 -6.16425 -4.23463 0.79825 1.41692 2.18505 2.72038 3.11821 3.27641 3.30914 3.33217 3.69055 4.01035 4.32130 4.35384 4.71409 4.83681 4.92219 4.95445 5.16406 5.27020 5.32860 5.39264 5.46494 5.66353 6.01342 6.15849 6.19641 6.35498 6.53077 6.68093 6.88762 6.92327 6.94420 7.02635 7.18439 7.61162 7.74097 7.74986 7.95299 8.15832 8.65205 8.89826 9.41732 10.91036 Molecular weight = 277.11amu Principal moments of inertia in cm(-1) A = 0.037745 B = 0.003284 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.642217 B = 8524.435085 C = 8895.612187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.508 3.492 3 O -0.522 6.522 4 N -0.673 5.673 5 C 0.161 3.839 6 C -0.136 4.136 7 C -0.042 4.042 8 C -0.126 4.126 9 C 0.496 3.504 10 O -0.518 6.518 11 O -0.352 6.352 12 C 0.216 3.784 13 H 0.047 0.953 14 C -0.155 4.155 15 C -0.521 4.521 16 H 0.068 0.932 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.913 3.087 20 H -0.285 1.285 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.043 4.043 24 C -0.159 4.159 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.412 0.588 29 H 0.143 0.857 30 H 0.140 0.860 31 H 0.099 0.901 32 H 0.037 0.963 33 H 0.016 0.984 34 H 0.267 0.733 35 H 0.146 0.854 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.404 -0.973 -4.011 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.296 3.704 3 O -0.397 6.397 4 N -0.319 5.319 5 C 0.066 3.934 6 C -0.156 4.156 7 C -0.061 4.061 8 C -0.128 4.128 9 C 0.340 3.660 10 O -0.410 6.410 11 O -0.268 6.268 12 C 0.163 3.837 13 H 0.065 0.935 14 C -0.213 4.213 15 C -0.559 4.559 16 H 0.087 0.913 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.739 3.261 20 H -0.210 1.210 21 H -0.200 1.200 22 H -0.199 1.199 23 C -0.062 4.062 24 C -0.180 4.180 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.101 0.899 28 H 0.248 0.752 29 H 0.161 0.839 30 H 0.158 0.842 31 H 0.118 0.882 32 H 0.056 0.944 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.164 0.836 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.598 0.068 -4.160 22.978 hybrid contribution 0.250 -0.808 0.739 1.123 sum -22.347 -0.740 -3.421 22.620 Atomic orbital electron populations 1.21893 0.90582 1.05287 1.05230 1.21057 0.90953 0.83164 0.75201 1.90763 1.70384 1.31256 1.47257 1.43552 1.05313 1.10077 1.72924 1.17955 0.82435 0.96723 0.96256 1.21149 0.93164 0.99921 1.01362 1.21213 0.93646 0.96475 0.94736 1.19473 0.91055 0.98255 1.04000 1.20954 0.88342 0.80337 0.76333 1.90770 1.67826 1.37349 1.45013 1.86533 1.28127 1.46431 1.65687 1.20650 0.69057 0.98299 0.95657 0.93497 1.22166 1.04931 0.98648 0.95508 1.20983 0.92156 1.39954 1.02819 0.91336 1.24889 0.96102 0.95321 0.97682 1.69893 1.02289 1.45071 1.35445 0.86322 0.77440 0.79687 0.82608 1.21043 1.19985 1.19950 1.21371 0.92786 0.96929 0.95071 1.20847 0.94809 1.00433 1.01877 0.88376 0.88441 0.89868 0.75156 0.83895 0.84224 0.88216 0.94420 0.96468 0.92339 0.83597 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 10.31 36.01 0.37 -0.32 16 2 C 0.51 4.55 7.78 -10.98 -0.09 4.46 16 3 O -0.52 -7.18 14.51 5.57 0.08 -7.10 16 4 N -0.67 -5.38 5.31 -9.86 -0.05 -5.43 16 5 C 0.16 1.88 6.30 -83.74 -0.53 1.35 16 6 C -0.14 -1.89 8.67 -39.46 -0.34 -2.23 16 7 C -0.04 -0.66 9.58 -39.21 -0.38 -1.04 16 8 C -0.13 -2.22 5.88 -104.96 -0.62 -2.83 16 9 C 0.50 11.09 7.86 34.49 0.27 11.36 16 10 O -0.52 -12.91 15.60 -19.27 -0.30 -13.22 16 11 O -0.35 -8.57 9.10 -40.62 -0.37 -8.94 16 12 C 0.22 5.92 2.57 -27.88 -0.07 5.84 16 13 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 14 C -0.15 -4.00 9.33 37.16 0.35 -3.65 16 15 C -0.52 -14.78 8.90 -34.44 -0.31 -15.08 16 16 H 0.07 1.90 7.81 -52.49 -0.41 1.48 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.54 11.32 55.43 0.63 -24.92 16 19 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 23 C -0.04 -0.62 9.60 -39.21 -0.38 -1.00 16 24 C -0.16 -1.82 9.94 -39.46 -0.39 -2.21 16 25 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.41 1.67 8.82 -40.82 -0.36 1.31 16 29 H 0.14 1.98 6.21 -52.49 -0.33 1.65 16 30 H 0.14 2.21 7.64 -52.49 -0.40 1.81 16 31 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.15 2.09 7.60 -52.49 -0.40 1.69 16 36 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 317.09 15.07 4.78 4.78 Total: -1.00 -34.54 317.09 -6.71 -41.25 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -4.25 Total: 1.10 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -2.20 Total: -3.71 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: 0.57 Total: -30.35 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.59 Total: -29.25 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.54 -6.71 -41.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113686231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.652 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds