Wall clock time and date at job start Mon Mar 30 2020 01:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.55193 * 2 1 4 4 O 1.44378 * 110.61263 * 123.05277 * 2 1 3 5 5 C 1.43745 * 106.97348 * 158.56231 * 4 2 1 6 6 C 1.54106 * 107.29161 * 333.48027 * 5 4 2 7 7 C 1.54810 * 104.18526 * 2.03378 * 6 5 4 8 8 H 1.09004 * 110.90527 * 139.11692 * 7 6 5 9 9 N 1.46498 * 110.90341 * 262.67671 * 7 6 5 10 10 S 1.65595 * 120.00363 * 263.54806 * 9 7 6 11 11 O 1.42104 * 104.28063 * 181.07611 * 10 9 7 12 12 O 1.42106 * 104.27807 * 308.92975 * 10 9 7 13 13 C 1.81395 * 104.44934 * 65.00358 * 10 9 7 14 14 C 1.53004 * 109.47280 * 180.02562 * 13 10 9 15 15 C 1.52997 * 109.47155 * 179.97438 * 14 13 10 16 16 C 1.50704 * 109.46929 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00118 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99787 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00159 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99913 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47016 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47011 * 120.00059 * 20 18 16 23 23 H 1.48498 * 109.46986 * 239.99832 * 20 18 16 24 24 H 1.08997 * 109.47507 * 182.87976 * 1 2 3 25 25 H 1.08998 * 109.46963 * 302.88029 * 1 2 3 26 26 H 1.09003 * 109.46884 * 62.87652 * 1 2 3 27 27 H 1.09004 * 109.88020 * 214.06063 * 5 4 2 28 28 H 1.09000 * 109.88175 * 92.90294 * 5 4 2 29 29 H 1.09000 * 110.48246 * 120.70988 * 6 5 4 30 30 H 1.08999 * 110.48882 * 243.35541 * 6 5 4 31 31 H 0.97009 * 119.99865 * 83.55277 * 9 7 6 32 32 H 1.09002 * 109.47327 * 299.99993 * 13 10 9 33 33 H 1.09002 * 109.47194 * 60.00011 * 13 10 9 34 34 H 1.09002 * 109.46838 * 300.00175 * 14 13 10 35 35 H 1.09002 * 109.47094 * 59.99832 * 14 13 10 36 36 H 1.08998 * 109.46942 * 299.99675 * 15 14 13 37 37 H 1.09002 * 109.47250 * 59.99935 * 15 14 13 38 38 H 0.97003 * 120.00129 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 8 2.0383 -0.7370 1.1327 5 6 3.3838 -1.1267 0.8102 6 6 3.4794 -1.2158 -0.7253 7 6 2.0757 -0.7876 -1.2183 8 1 2.1509 -0.1451 -2.0956 9 7 1.2413 -1.9581 -1.5006 10 16 1.1177 -2.5330 -3.0486 11 8 0.2250 -3.6336 -2.9436 12 8 0.7821 -1.3888 -3.8216 13 6 2.7903 -3.1065 -3.4534 14 6 2.8068 -3.6668 -4.8770 15 6 4.2178 -4.1499 -5.2186 16 6 4.2338 -4.7023 -6.6207 17 1 3.3282 -4.7086 -7.2091 18 6 5.4048 -5.1997 -7.1523 19 7 6.5075 -5.1925 -6.4356 20 14 5.4249 -5.8838 -8.8904 21 1 4.0658 -5.7785 -9.4796 22 1 6.3846 -5.1082 -9.7165 23 1 5.8401 -7.3092 -8.8566 24 1 -0.3634 -1.0263 0.0516 25 1 -0.3633 0.5579 0.8630 26 1 -0.3633 0.4685 -0.9147 27 1 3.6044 -2.0984 1.2522 28 1 4.0853 -0.3801 1.1825 29 1 4.2406 -0.5317 -1.1004 30 1 3.6973 -2.2378 -1.0354 31 1 0.7611 -2.3965 -0.7806 32 1 3.4875 -2.2715 -3.3839 33 1 3.0866 -3.8866 -2.7521 34 1 2.1096 -4.5017 -4.9470 35 1 2.5107 -2.8864 -5.5781 36 1 4.9146 -3.3147 -5.1488 37 1 4.5143 -4.9301 -4.5177 38 1 7.3314 -5.5421 -6.8097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121370820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:29 Heat of formation + Delta-G solvation = -137.001244 kcal Electronic energy + Delta-G solvation = -20186.685020 eV Core-core repulsion = 16962.736715 eV Total energy + Delta-G solvation = -3223.948305 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.01621 -36.93195 -35.80640 -34.90451 -34.71702 -32.25248 -31.78539 -30.41921 -27.84493 -25.98398 -23.78722 -22.08682 -21.28947 -20.67292 -19.41263 -17.83877 -17.01784 -16.59657 -16.04086 -15.81687 -15.66486 -15.35795 -14.94730 -14.49908 -14.29605 -13.74345 -12.94472 -12.66684 -12.60855 -12.52603 -12.30226 -12.00745 -11.97638 -11.87268 -11.82250 -11.55530 -11.43598 -11.27660 -11.04183 -10.95719 -10.84504 -10.44805 -10.11466 -9.99056 -9.68252 -9.34786 -9.10492 -8.43711 -6.08504 -4.11501 0.41375 2.76939 3.27665 3.35369 3.40241 3.53482 3.88788 4.19633 4.31686 4.39294 4.40486 4.69208 4.77707 4.85541 4.99479 5.09919 5.12490 5.20088 5.28318 5.35582 5.42366 5.53401 5.62725 5.70001 5.82528 5.91657 5.94656 6.22834 6.40685 6.61974 6.82859 6.87039 7.53690 7.63253 7.89537 8.29956 8.94952 9.53534 11.02717 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030052 B = 0.004000 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.480359 B = 6998.375944 C = 7620.750603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.073 3.927 3 H 0.083 0.917 4 O -0.374 6.374 5 C 0.050 3.950 6 C -0.185 4.185 7 C 0.116 3.884 8 H 0.114 0.886 9 N -1.111 6.111 10 S 2.599 3.401 11 O -0.962 6.962 12 O -0.962 6.962 13 C -0.609 4.609 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.417 0.583 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.232 10.581 14.916 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.101 0.899 4 O -0.293 6.293 5 C -0.027 4.027 6 C -0.224 4.224 7 C 0.008 3.992 8 H 0.131 0.869 9 N -0.868 5.868 10 S 2.695 3.305 11 O -0.952 6.952 12 O -0.951 6.951 13 C -0.741 4.741 14 C -0.145 4.145 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.253 0.747 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.898 10.585 14.455 19.580 hybrid contribution 0.966 -0.689 -0.546 1.306 sum -6.932 9.897 13.909 18.424 Atomic orbital electron populations 1.21749 0.92606 1.03299 1.02738 1.23333 0.95936 0.95195 0.84176 0.89914 1.88903 1.27997 1.73480 1.38935 1.23115 0.84400 1.00689 0.94510 1.23674 0.97683 1.04489 0.96601 1.22314 0.89294 0.87392 1.00245 0.86858 1.55718 1.61697 1.40775 1.28610 1.05371 0.77960 0.74362 0.72828 1.93586 1.61793 1.54826 1.84984 1.93569 1.82497 1.49923 1.69156 1.30615 1.22159 1.11973 1.09371 1.21506 1.04202 1.00149 0.88665 1.19064 0.88519 0.96456 0.96728 1.21292 0.95525 1.40361 0.99247 0.92310 1.25019 0.95584 0.95828 0.97931 1.69966 1.00003 1.46547 1.36921 0.86501 0.78200 0.78685 0.84447 1.19584 1.20931 1.20936 0.91510 0.91758 0.90533 0.89645 0.92165 0.89080 0.89067 0.74727 0.85505 0.85274 0.91565 0.91556 0.96132 0.96130 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.23 37.16 0.34 -0.89 16 2 C 0.07 0.63 3.84 -25.68 -0.10 0.53 16 3 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 4 O -0.37 -3.76 11.22 -35.23 -0.40 -4.16 16 5 C 0.05 0.41 7.70 37.74 0.29 0.70 16 6 C -0.18 -1.52 6.55 -25.20 -0.17 -1.68 16 7 C 0.12 1.07 3.41 -65.93 -0.22 0.85 16 8 H 0.11 1.00 7.59 -51.93 -0.39 0.61 16 9 N -1.11 -11.72 4.74 -3.19 -0.02 -11.74 16 10 S 2.60 36.80 5.45 -107.50 -0.59 36.22 16 11 O -0.96 -16.65 18.08 -57.54 -1.04 -17.69 16 12 O -0.96 -16.14 17.44 -57.54 -1.00 -17.15 16 13 C -0.61 -8.96 5.30 37.16 0.20 -8.77 16 14 C -0.11 -2.10 5.16 -26.73 -0.14 -2.23 16 15 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 16 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.30 13.29 55.43 0.74 -25.56 16 20 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.07 0.58 6.69 -51.93 -0.35 0.24 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.77 7.20 -51.93 -0.37 0.39 16 31 H 0.42 3.99 7.55 -34.47 -0.26 3.73 16 32 H 0.13 1.62 7.87 -51.92 -0.41 1.21 16 33 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 34 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -34.61 324.32 -8.76 -43.37 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.98 Total: -0.26 kcal Atomic # 6 Polarization: -23.97 SS G_CDS: -0.35 Total: -24.31 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.72 Total: -37.30 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -2.44 Total: -38.99 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 36.80 SS G_CDS: -0.59 Total: 36.22 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.61 -8.76 -43.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121370820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.629 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds