Wall clock time and date at job start Mon Mar 30 2020 01:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.55193 * 2 1 4 4 O 1.44378 * 110.61263 * 123.05277 * 2 1 3 5 5 C 1.43745 * 106.97348 * 158.56231 * 4 2 1 6 6 C 1.54106 * 107.29161 * 333.48027 * 5 4 2 7 7 C 1.54810 * 104.18526 * 2.03378 * 6 5 4 8 8 H 1.09004 * 110.90527 * 139.11692 * 7 6 5 9 9 N 1.46498 * 110.90341 * 262.67671 * 7 6 5 10 10 S 1.65595 * 120.00363 * 263.54806 * 9 7 6 11 11 O 1.42104 * 104.28063 * 181.07611 * 10 9 7 12 12 O 1.42106 * 104.27807 * 308.92975 * 10 9 7 13 13 C 1.81395 * 104.44934 * 65.00358 * 10 9 7 14 14 C 1.53004 * 109.47280 * 180.02562 * 13 10 9 15 15 C 1.52997 * 109.47155 * 179.97438 * 14 13 10 16 16 C 1.50704 * 109.46929 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00118 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99787 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00159 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99913 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47016 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47011 * 120.00059 * 20 18 16 23 23 H 1.48498 * 109.46986 * 239.99832 * 20 18 16 24 24 H 1.08997 * 109.47507 * 182.87976 * 1 2 3 25 25 H 1.08998 * 109.46963 * 302.88029 * 1 2 3 26 26 H 1.09003 * 109.46884 * 62.87652 * 1 2 3 27 27 H 1.09004 * 109.88020 * 214.06063 * 5 4 2 28 28 H 1.09000 * 109.88175 * 92.90294 * 5 4 2 29 29 H 1.09000 * 110.48246 * 120.70988 * 6 5 4 30 30 H 1.08999 * 110.48882 * 243.35541 * 6 5 4 31 31 H 0.97009 * 119.99865 * 83.55277 * 9 7 6 32 32 H 1.09002 * 109.47327 * 299.99993 * 13 10 9 33 33 H 1.09002 * 109.47194 * 60.00011 * 13 10 9 34 34 H 1.09002 * 109.46838 * 300.00175 * 14 13 10 35 35 H 1.09002 * 109.47094 * 59.99832 * 14 13 10 36 36 H 1.08998 * 109.46942 * 299.99675 * 15 14 13 37 37 H 1.09002 * 109.47250 * 59.99935 * 15 14 13 38 38 H 0.97003 * 120.00129 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 8 2.0383 -0.7370 1.1327 5 6 3.3838 -1.1267 0.8102 6 6 3.4794 -1.2158 -0.7253 7 6 2.0757 -0.7876 -1.2183 8 1 2.1509 -0.1451 -2.0956 9 7 1.2413 -1.9581 -1.5006 10 16 1.1177 -2.5330 -3.0486 11 8 0.2250 -3.6336 -2.9436 12 8 0.7821 -1.3888 -3.8216 13 6 2.7903 -3.1065 -3.4534 14 6 2.8068 -3.6668 -4.8770 15 6 4.2178 -4.1499 -5.2186 16 6 4.2338 -4.7023 -6.6207 17 1 3.3282 -4.7086 -7.2091 18 6 5.4048 -5.1997 -7.1523 19 7 6.5075 -5.1925 -6.4356 20 14 5.4249 -5.8838 -8.8904 21 1 4.0658 -5.7785 -9.4796 22 1 6.3846 -5.1082 -9.7165 23 1 5.8401 -7.3092 -8.8566 24 1 -0.3634 -1.0263 0.0516 25 1 -0.3633 0.5579 0.8630 26 1 -0.3633 0.4685 -0.9147 27 1 3.6044 -2.0984 1.2522 28 1 4.0853 -0.3801 1.1825 29 1 4.2406 -0.5317 -1.1004 30 1 3.6973 -2.2378 -1.0354 31 1 0.7611 -2.3965 -0.7806 32 1 3.4875 -2.2715 -3.3839 33 1 3.0866 -3.8866 -2.7521 34 1 2.1096 -4.5017 -4.9470 35 1 2.5107 -2.8864 -5.5781 36 1 4.9146 -3.3147 -5.1488 37 1 4.5143 -4.9301 -4.5177 38 1 7.3314 -5.5421 -6.8097 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121370820.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:29 Heat of formation + Delta-G solvation = -163.119886 kcal Electronic energy + Delta-G solvation = -20187.817609 eV Core-core repulsion = 16962.736715 eV Total energy + Delta-G solvation = -3225.080894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.70633 -38.20071 -37.07857 -36.47512 -35.72526 -34.17631 -32.44919 -31.18983 -29.65028 -26.65597 -25.64000 -22.84898 -22.32508 -21.97084 -20.50147 -18.94353 -18.57906 -17.82783 -17.20324 -16.85905 -16.64443 -16.47018 -16.17149 -15.77990 -15.62805 -14.52168 -14.47339 -14.12068 -13.67215 -13.52940 -13.32587 -13.28625 -13.20076 -13.11790 -13.03853 -12.85176 -12.77901 -12.60757 -12.21432 -12.14347 -12.06962 -11.76135 -11.73149 -11.36848 -11.15112 -10.76783 -10.57805 -10.28801 -8.22960 -6.33541 -0.76262 1.39519 1.40690 1.53528 1.73448 2.39766 2.73019 2.88994 3.10917 3.19339 3.58549 3.61579 3.74716 3.90977 4.05795 4.15768 4.25032 4.35424 4.39160 4.45452 4.65283 4.70445 4.77870 4.92136 4.94692 5.01639 5.05874 5.09255 5.22154 5.30202 5.45890 5.63483 5.79677 5.97223 6.04196 6.19998 6.82263 7.35940 8.88557 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.030052 B = 0.004000 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.480359 B = 6998.375944 C = 7620.750603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.073 3.927 3 H 0.102 0.898 4 O -0.392 6.392 5 C 0.046 3.954 6 C -0.186 4.186 7 C 0.106 3.894 8 H 0.120 0.880 9 N -1.097 6.097 10 S 2.629 3.371 11 O -0.993 6.993 12 O -0.986 6.986 13 C -0.609 4.609 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.552 4.552 17 H 0.059 0.941 18 C 0.004 3.996 19 N -0.929 5.929 20 Si 0.961 3.039 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.278 1.278 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.424 0.576 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.006 0.994 37 H 0.003 0.997 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 11.250 15.168 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.014 3.986 3 H 0.120 0.880 4 O -0.312 6.312 5 C -0.030 4.030 6 C -0.225 4.225 7 C -0.002 4.002 8 H 0.138 0.862 9 N -0.857 5.857 10 S 2.725 3.275 11 O -0.984 6.984 12 O -0.975 6.975 13 C -0.740 4.740 14 C -0.146 4.146 15 C -0.007 4.007 16 C -0.590 4.590 17 H 0.077 0.923 18 C -0.194 4.194 19 N -0.569 5.569 20 Si 0.786 3.214 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.203 1.203 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.261 0.739 32 H 0.166 0.834 33 H 0.164 0.836 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.024 0.976 37 H 0.021 0.979 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.967 11.252 14.709 20.160 hybrid contribution 0.999 -0.856 -0.545 1.424 sum -6.968 10.396 14.164 18.901 Atomic orbital electron populations 1.21792 0.92699 1.03065 1.03228 1.23441 0.95985 0.95825 0.83343 0.88031 1.88886 1.28902 1.73839 1.39547 1.23228 0.83964 1.01313 0.94506 1.23719 0.97316 1.04804 0.96677 1.22582 0.89736 0.86909 1.00991 0.86233 1.55341 1.61990 1.41091 1.27304 1.04260 0.76887 0.73248 0.73144 1.93540 1.62863 1.56180 1.85770 1.93536 1.82750 1.50692 1.70571 1.30571 1.23696 1.13216 1.06480 1.21314 1.00879 1.00356 0.92015 1.18960 0.91250 0.95279 0.95193 1.21774 0.95741 1.40641 1.00832 0.92268 1.25903 0.95227 0.96106 1.02184 1.70070 1.00625 1.47382 1.38816 0.85452 0.78516 0.78066 0.79367 1.18849 1.20187 1.20318 0.92166 0.90938 0.90387 0.89465 0.90802 0.87432 0.89290 0.73859 0.83381 0.83630 0.91792 0.91437 0.97598 0.97908 0.92653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.23 71.98 0.66 -1.62 16 2 C 0.07 1.11 3.84 31.28 0.12 1.23 16 3 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 4 O -0.39 -7.13 11.22 -148.98 -1.67 -8.80 16 5 C 0.05 0.66 7.70 72.36 0.56 1.22 16 6 C -0.19 -2.62 6.55 31.59 0.21 -2.41 16 7 C 0.11 1.74 3.41 46.29 0.16 1.89 16 8 H 0.12 1.84 7.59 -2.39 -0.02 1.83 16 9 N -1.10 -21.43 4.74 -164.00 -0.78 -22.21 16 10 S 2.63 71.58 5.45 -56.49 -0.31 71.27 16 11 O -0.99 -33.73 18.08 -127.65 -2.31 -36.04 16 12 O -0.99 -31.99 17.44 -127.65 -2.23 -34.22 16 13 C -0.61 -17.20 5.30 71.98 0.38 -16.82 16 14 C -0.11 -4.20 5.16 30.59 0.16 -4.04 16 15 C 0.03 1.58 4.97 29.85 0.15 1.73 16 16 C -0.55 -31.00 9.11 25.60 0.23 -30.77 16 17 H 0.06 3.23 7.74 -2.91 -0.02 3.20 16 18 C 0.00 0.23 5.46 84.65 0.46 0.69 16 19 N -0.93 -54.93 13.29 21.45 0.28 -54.64 16 20 Si 0.96 43.77 29.54 68.60 2.03 45.79 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H 0.06 0.98 6.69 -2.39 -0.02 0.96 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.30 7.20 -2.39 -0.02 1.28 16 31 H 0.42 7.51 7.55 -96.74 -0.73 6.78 16 32 H 0.15 3.53 7.87 -2.39 -0.02 3.51 16 33 H 0.15 3.63 8.14 -2.39 -0.02 3.61 16 34 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -73.26 324.32 -1.58 -74.84 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.31 Total: 12.91 kcal Atomic # 6 Polarization: -51.99 SS G_CDS: 3.09 Total: -48.90 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -0.49 Total: -76.85 kcal Atomic # 8 Polarization: -72.85 SS G_CDS: -6.21 Total: -79.06 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: 71.58 SS G_CDS: -0.31 Total: 71.27 kcal Total: -73.26 -1.58 -74.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121370820.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.281 kcal (2) G-P(sol) polarization free energy of solvation -73.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds