Wall clock time and date at job start Mon Mar 30 2020 01:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.41932 * 2 1 4 4 O 1.44430 * 110.37639 * 122.31587 * 2 1 3 5 5 C 1.44422 * 105.27678 * 159.34308 * 4 2 1 6 6 C 1.54479 * 104.80576 * 319.48863 * 5 4 2 7 7 C 1.54480 * 110.37445 * 237.69679 * 2 1 3 8 8 H 1.08999 * 110.62685 * 335.88943 * 7 2 1 9 9 N 1.46506 * 110.51364 * 98.54270 * 7 2 1 10 10 S 1.65600 * 119.99871 * 211.10086 * 9 7 2 11 11 O 1.42101 * 104.27882 * 308.92501 * 10 9 7 12 12 O 1.42102 * 104.27187 * 181.06876 * 10 9 7 13 13 C 1.81399 * 104.45301 * 64.99838 * 10 9 7 14 14 C 1.52996 * 109.47218 * 179.97438 * 13 10 9 15 15 C 1.52996 * 109.47168 * 179.97438 * 14 13 10 16 16 C 1.50704 * 109.47256 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99847 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00018 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99936 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99702 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47158 * 90.00364 * 20 18 16 22 22 H 1.48502 * 109.46959 * 209.99964 * 20 18 16 23 23 H 1.48501 * 109.47510 * 330.00417 * 20 18 16 24 24 H 1.09007 * 109.46817 * 182.30202 * 1 2 3 25 25 H 1.08998 * 109.47411 * 302.30101 * 1 2 3 26 26 H 1.09000 * 109.47363 * 62.30927 * 1 2 3 27 27 H 1.08995 * 110.37213 * 200.66111 * 5 4 2 28 28 H 1.09000 * 110.37282 * 78.32068 * 5 4 2 29 29 H 1.08997 * 110.51204 * 265.33960 * 6 5 4 30 30 H 1.08997 * 110.51517 * 142.62260 * 6 5 4 31 31 H 0.97002 * 119.99684 * 31.09545 * 9 7 2 32 32 H 1.09001 * 109.46838 * 300.00058 * 13 10 9 33 33 H 1.08998 * 109.46934 * 59.99858 * 13 10 9 34 34 H 1.09004 * 109.47227 * 300.00383 * 14 13 10 35 35 H 1.09001 * 109.46834 * 59.99744 * 14 13 10 36 36 H 1.08994 * 109.47198 * 300.00064 * 15 14 13 37 37 H 1.09007 * 109.46582 * 60.00331 * 15 14 13 38 38 H 0.97002 * 119.99389 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0328 -0.7238 1.1442 5 6 3.3874 -1.0872 0.7993 6 6 3.3178 -1.5056 -0.6861 7 6 2.0678 -0.7739 -1.2240 8 1 1.3286 -1.4917 -1.5796 9 7 2.4376 0.1538 -2.2960 10 16 2.3003 -0.3130 -3.8789 11 8 2.9816 -1.5588 -3.9373 12 8 2.7626 0.8100 -4.6167 13 6 0.5192 -0.5493 -4.1284 14 6 0.2599 -0.9865 -5.5715 15 6 -1.2423 -1.1864 -5.7818 16 6 -1.4977 -1.6165 -7.2034 17 1 -0.6711 -1.7358 -7.8882 18 6 -2.7866 -1.8577 -7.6296 19 7 -3.7931 -1.7119 -6.7958 20 14 -3.1030 -2.3915 -9.3915 21 1 -3.0631 -3.8737 -9.4744 22 1 -4.4390 -1.9075 -9.8230 23 1 -2.0587 -1.8179 -10.2778 24 1 -0.3633 -1.0269 0.0413 25 1 -0.3634 0.5491 0.8686 26 1 -0.3634 0.4775 -0.9099 27 1 3.7242 -1.9224 1.4133 28 1 4.0525 -0.2324 0.9220 29 1 3.1955 -2.5851 -0.7735 30 1 4.2109 -1.1771 -1.2177 31 1 2.7628 1.0414 -2.0785 32 1 0.1552 -1.3164 -3.4449 33 1 -0.0023 0.3879 -3.9339 34 1 0.6240 -0.2191 -6.2547 35 1 0.7816 -1.9235 -5.7664 36 1 -1.6058 -1.9540 -5.0987 37 1 -1.7642 -0.2495 -5.5867 38 1 -4.6998 -1.8812 -7.0959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121371109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:32 Heat of formation + Delta-G solvation = -137.798340 kcal Electronic energy + Delta-G solvation = -20067.194693 eV Core-core repulsion = 16843.211824 eV Total energy + Delta-G solvation = -3223.982869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.96636 -36.95003 -35.82809 -35.10595 -34.71592 -32.22557 -31.78386 -30.42157 -27.85560 -25.65901 -23.77706 -22.46432 -21.38568 -20.70368 -19.26540 -17.57594 -17.28228 -16.65086 -16.05075 -15.83359 -15.68563 -15.49504 -14.59194 -14.50246 -14.09600 -13.84982 -13.20224 -12.71885 -12.58213 -12.44883 -12.32491 -12.17035 -11.97321 -11.89499 -11.82911 -11.56995 -11.39531 -11.24511 -11.08782 -10.93181 -10.87092 -10.45314 -10.13348 -9.98535 -9.75026 -9.36492 -9.12311 -8.42866 -6.07878 -4.11023 0.38228 2.71145 3.29176 3.35445 3.39400 3.58661 3.84333 4.21400 4.34835 4.37837 4.40840 4.61624 4.77540 4.84077 4.98318 5.08269 5.12846 5.18980 5.28769 5.32395 5.41894 5.52955 5.68095 5.77935 5.80827 5.86433 5.95299 6.22076 6.40037 6.52317 6.78141 6.83609 7.53888 7.63555 7.89925 8.30227 8.95114 9.53917 11.03321 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026865 B = 0.003978 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.986993 B = 7037.054520 C = 7631.922927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.069 3.931 3 H 0.077 0.923 4 O -0.369 6.369 5 C 0.045 3.955 6 C -0.171 4.171 7 C 0.122 3.878 8 H 0.103 0.897 9 N -1.115 6.115 10 S 2.598 3.402 11 O -0.958 6.958 12 O -0.962 6.962 13 C -0.609 4.609 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.415 0.585 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.732 3.739 15.722 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.009 3.991 3 H 0.095 0.905 4 O -0.288 6.288 5 C -0.032 4.032 6 C -0.210 4.210 7 C 0.014 3.986 8 H 0.121 0.879 9 N -0.873 5.873 10 S 2.694 3.306 11 O -0.948 6.948 12 O -0.952 6.952 13 C -0.741 4.741 14 C -0.145 4.145 15 C -0.008 4.008 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.249 0.751 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 12.112 3.394 15.307 19.812 hybrid contribution -0.683 0.143 -0.716 1.000 sum 11.429 3.537 14.591 18.869 Atomic orbital electron populations 1.21877 0.92243 1.03700 1.03191 1.23263 0.96019 0.95520 0.84263 0.90543 1.89178 1.27268 1.74569 1.37737 1.23422 0.84552 1.00060 0.95202 1.23444 0.99226 1.02232 0.96121 1.22193 0.96645 0.91094 0.88660 0.87924 1.55855 1.82316 1.25283 1.23829 1.05434 0.78587 0.74350 0.72257 1.93581 1.70999 1.45209 1.85002 1.93586 1.79947 1.52154 1.69533 1.30559 1.23310 1.11264 1.08976 1.21505 1.04028 1.00768 0.88209 1.19065 0.87062 0.97498 0.97148 1.21250 0.92663 1.46177 0.96444 0.92371 1.25014 0.96212 0.95388 0.97716 1.69956 0.99127 1.49237 1.35078 0.86554 0.77612 0.78909 0.84729 1.20556 1.21161 1.19735 0.91181 0.91416 0.90434 0.88815 0.92196 0.89397 0.89252 0.75098 0.85552 0.85163 0.91535 0.91539 0.96104 0.96090 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.52 37.15 0.35 -0.94 16 2 C 0.07 0.61 3.64 -25.96 -0.09 0.52 16 3 H 0.08 0.59 7.81 -51.93 -0.41 0.18 16 4 O -0.37 -3.79 11.34 -35.23 -0.40 -4.19 16 5 C 0.04 0.36 7.63 37.93 0.29 0.65 16 6 C -0.17 -1.57 6.88 -25.16 -0.17 -1.75 16 7 C 0.12 1.18 3.08 -66.36 -0.20 0.97 16 8 H 0.10 0.96 6.98 -51.93 -0.36 0.59 16 9 N -1.12 -11.06 5.37 -3.55 -0.02 -11.08 16 10 S 2.60 36.09 5.40 -107.50 -0.58 35.51 16 11 O -0.96 -16.01 17.82 -57.54 -1.03 -17.03 16 12 O -0.96 -16.25 18.08 -57.54 -1.04 -17.29 16 13 C -0.61 -8.89 5.97 37.16 0.22 -8.67 16 14 C -0.11 -2.09 5.16 -26.74 -0.14 -2.22 16 15 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 16 C -0.53 -14.70 9.11 -34.44 -0.31 -15.01 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 0.83 7.96 -51.93 -0.41 0.42 16 31 H 0.41 3.26 8.57 -34.48 -0.30 2.96 16 32 H 0.13 1.62 7.47 -51.92 -0.39 1.23 16 33 H 0.13 1.67 8.14 -51.92 -0.42 1.25 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 LS Contribution 327.99 15.07 4.94 4.94 Total: -1.00 -34.67 327.99 -8.76 -43.43 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.06 Total: -0.82 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -0.29 Total: -24.28 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.72 Total: -36.67 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -2.46 Total: -38.52 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 36.09 SS G_CDS: -0.58 Total: 35.51 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.67 -8.76 -43.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121371109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.373 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds