Wall clock time and date at job start Mon Mar 30 2020 01:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.41932 * 2 1 4 4 O 1.44430 * 110.37639 * 122.31587 * 2 1 3 5 5 C 1.44422 * 105.27678 * 159.34308 * 4 2 1 6 6 C 1.54479 * 104.80576 * 319.48863 * 5 4 2 7 7 C 1.54480 * 110.37445 * 237.69679 * 2 1 3 8 8 H 1.08999 * 110.62685 * 335.88943 * 7 2 1 9 9 N 1.46506 * 110.51364 * 98.54270 * 7 2 1 10 10 S 1.65600 * 119.99871 * 211.10086 * 9 7 2 11 11 O 1.42101 * 104.27882 * 308.92501 * 10 9 7 12 12 O 1.42102 * 104.27187 * 181.06876 * 10 9 7 13 13 C 1.81399 * 104.45301 * 64.99838 * 10 9 7 14 14 C 1.52996 * 109.47218 * 179.97438 * 13 10 9 15 15 C 1.52996 * 109.47168 * 179.97438 * 14 13 10 16 16 C 1.50704 * 109.47256 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99847 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00018 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99936 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99702 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47158 * 90.00364 * 20 18 16 22 22 H 1.48502 * 109.46959 * 209.99964 * 20 18 16 23 23 H 1.48501 * 109.47510 * 330.00417 * 20 18 16 24 24 H 1.09007 * 109.46817 * 182.30202 * 1 2 3 25 25 H 1.08998 * 109.47411 * 302.30101 * 1 2 3 26 26 H 1.09000 * 109.47363 * 62.30927 * 1 2 3 27 27 H 1.08995 * 110.37213 * 200.66111 * 5 4 2 28 28 H 1.09000 * 110.37282 * 78.32068 * 5 4 2 29 29 H 1.08997 * 110.51204 * 265.33960 * 6 5 4 30 30 H 1.08997 * 110.51517 * 142.62260 * 6 5 4 31 31 H 0.97002 * 119.99684 * 31.09545 * 9 7 2 32 32 H 1.09001 * 109.46838 * 300.00058 * 13 10 9 33 33 H 1.08998 * 109.46934 * 59.99858 * 13 10 9 34 34 H 1.09004 * 109.47227 * 300.00383 * 14 13 10 35 35 H 1.09001 * 109.46834 * 59.99744 * 14 13 10 36 36 H 1.08994 * 109.47198 * 300.00064 * 15 14 13 37 37 H 1.09007 * 109.46582 * 60.00331 * 15 14 13 38 38 H 0.97002 * 119.99389 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0328 -0.7238 1.1442 5 6 3.3874 -1.0872 0.7993 6 6 3.3178 -1.5056 -0.6861 7 6 2.0678 -0.7739 -1.2240 8 1 1.3286 -1.4917 -1.5796 9 7 2.4376 0.1538 -2.2960 10 16 2.3003 -0.3130 -3.8789 11 8 2.9816 -1.5588 -3.9373 12 8 2.7626 0.8100 -4.6167 13 6 0.5192 -0.5493 -4.1284 14 6 0.2599 -0.9865 -5.5715 15 6 -1.2423 -1.1864 -5.7818 16 6 -1.4977 -1.6165 -7.2034 17 1 -0.6711 -1.7358 -7.8882 18 6 -2.7866 -1.8577 -7.6296 19 7 -3.7931 -1.7119 -6.7958 20 14 -3.1030 -2.3915 -9.3915 21 1 -3.0631 -3.8737 -9.4744 22 1 -4.4390 -1.9075 -9.8230 23 1 -2.0587 -1.8179 -10.2778 24 1 -0.3633 -1.0269 0.0413 25 1 -0.3634 0.5491 0.8686 26 1 -0.3634 0.4775 -0.9099 27 1 3.7242 -1.9224 1.4133 28 1 4.0525 -0.2324 0.9220 29 1 3.1955 -2.5851 -0.7735 30 1 4.2109 -1.1771 -1.2177 31 1 2.7628 1.0414 -2.0785 32 1 0.1552 -1.3164 -3.4449 33 1 -0.0023 0.3879 -3.9339 34 1 0.6240 -0.2191 -6.2547 35 1 0.7816 -1.9235 -5.7664 36 1 -1.6058 -1.9540 -5.0987 37 1 -1.7642 -0.2495 -5.5867 38 1 -4.6998 -1.8812 -7.0959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000121371109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:32 Heat of formation + Delta-G solvation = -164.221070 kcal Electronic energy + Delta-G solvation = -20068.340468 eV Core-core repulsion = 16843.211824 eV Total energy + Delta-G solvation = -3225.128645 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 277.118 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.67884 -38.19671 -37.07797 -36.46915 -35.94046 -34.16750 -32.44684 -31.20080 -29.66106 -26.35376 -25.63408 -23.16787 -22.43608 -22.09633 -20.37075 -18.71699 -18.54026 -18.09379 -17.22172 -16.81843 -16.60991 -16.46497 -16.43921 -15.79024 -15.08824 -14.61774 -14.47475 -14.13382 -13.97053 -13.53590 -13.35883 -13.24912 -13.20500 -13.14251 -12.98819 -12.87545 -12.75636 -12.62573 -12.37121 -12.15046 -12.08829 -11.80943 -11.70296 -11.37086 -11.11615 -10.78895 -10.57119 -10.40089 -8.22600 -6.33359 -0.77521 1.40707 1.41029 1.52446 1.69843 2.39952 2.71160 2.90632 3.11234 3.20505 3.57901 3.63089 3.72496 3.86709 3.95081 4.12918 4.20914 4.32575 4.39108 4.43561 4.64632 4.67460 4.76672 4.90986 4.94879 5.02846 5.06107 5.09457 5.13160 5.30869 5.45867 5.63586 5.79808 5.85669 6.05525 6.20034 6.82336 7.36072 8.88776 Molecular weight = 277.12amu Principal moments of inertia in cm(-1) A = 0.026865 B = 0.003978 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.986993 B = 7037.054520 C = 7631.922927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.071 3.929 3 H 0.092 0.908 4 O -0.387 6.387 5 C 0.045 3.955 6 C -0.175 4.175 7 C 0.113 3.887 8 H 0.105 0.895 9 N -1.097 6.097 10 S 2.629 3.371 11 O -0.985 6.985 12 O -0.990 6.990 13 C -0.611 4.611 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.553 4.553 17 H 0.060 0.940 18 C 0.004 3.996 19 N -0.929 5.929 20 Si 0.961 3.039 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.265 1.265 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.428 0.572 32 H 0.145 0.855 33 H 0.149 0.851 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.408 4.017 16.121 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 H 0.110 0.890 4 O -0.306 6.306 5 C -0.032 4.032 6 C -0.214 4.214 7 C 0.005 3.995 8 H 0.123 0.877 9 N -0.858 5.858 10 S 2.725 3.275 11 O -0.974 6.974 12 O -0.980 6.980 13 C -0.742 4.742 14 C -0.146 4.146 15 C -0.008 4.008 16 C -0.591 4.591 17 H 0.078 0.922 18 C -0.194 4.194 19 N -0.569 5.569 20 Si 0.786 3.214 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.189 1.189 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.124 0.876 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.265 0.735 32 H 0.163 0.837 33 H 0.167 0.833 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.798 3.680 15.704 20.590 hybrid contribution -0.882 0.060 -0.757 1.164 sum 11.916 3.741 14.946 19.478 Atomic orbital electron populations 1.21931 0.92139 1.03531 1.03794 1.23315 0.96140 0.95997 0.83400 0.88986 1.89165 1.28311 1.74886 1.38275 1.23539 0.83987 1.01125 0.94520 1.23473 0.98871 1.02111 0.96972 1.22390 0.97151 0.91255 0.88695 0.87731 1.55389 1.81970 1.26140 1.22318 1.04282 0.77480 0.73137 0.72651 1.93549 1.71446 1.46611 1.85833 1.93545 1.80291 1.53059 1.71133 1.30526 1.24858 1.12843 1.05969 1.21307 1.00367 1.01109 0.91775 1.18966 0.90441 0.95847 0.95507 1.21749 0.93048 1.46248 0.98054 0.92220 1.25907 0.96040 0.95367 1.02115 1.70066 0.99571 1.50144 1.37116 0.85501 0.77677 0.78721 0.79509 1.19757 1.20580 1.18922 0.91770 0.90951 0.89755 0.87620 0.90803 0.89616 0.89365 0.73494 0.83715 0.83254 0.91582 0.91540 0.97768 0.97768 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.52 71.98 0.69 -1.70 16 2 C 0.07 1.11 3.64 31.10 0.11 1.22 16 3 H 0.09 1.15 7.81 -2.39 -0.02 1.13 16 4 O -0.39 -7.22 11.34 -148.98 -1.69 -8.91 16 5 C 0.04 0.64 7.63 72.48 0.55 1.19 16 6 C -0.17 -2.92 6.88 31.61 0.22 -2.71 16 7 C 0.11 1.96 3.08 46.01 0.14 2.10 16 8 H 0.10 1.78 6.98 -2.39 -0.02 1.76 16 9 N -1.10 -19.50 5.37 -165.15 -0.89 -20.38 16 10 S 2.63 69.49 5.40 -56.49 -0.31 69.18 16 11 O -0.98 -31.84 17.82 -127.65 -2.27 -34.11 16 12 O -0.99 -32.22 18.08 -127.65 -2.31 -34.53 16 13 C -0.61 -17.12 5.97 71.98 0.43 -16.69 16 14 C -0.11 -4.18 5.16 30.59 0.16 -4.03 16 15 C 0.03 1.55 4.97 29.85 0.15 1.70 16 16 C -0.55 -31.11 9.11 25.60 0.23 -30.88 16 17 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 18 C 0.00 0.23 5.46 84.65 0.46 0.69 16 19 N -0.93 -55.15 13.29 21.45 0.28 -54.87 16 20 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 24 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.09 1.49 7.96 -2.39 -0.02 1.48 16 31 H 0.43 5.65 8.57 -96.74 -0.83 4.82 16 32 H 0.14 3.50 7.47 -2.39 -0.02 3.48 16 33 H 0.15 3.59 8.14 -2.39 -0.02 3.57 16 34 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 35 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 38 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -73.52 327.99 -1.80 -75.31 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.21 Total: 11.57 kcal Atomic # 6 Polarization: -52.25 SS G_CDS: 3.14 Total: -49.11 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -0.60 Total: -75.25 kcal Atomic # 8 Polarization: -71.29 SS G_CDS: -6.27 Total: -77.56 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 69.49 SS G_CDS: -0.31 Total: 69.18 kcal Total: -73.52 -1.80 -75.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121371109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.906 kcal (2) G-P(sol) polarization free energy of solvation -73.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds